BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496942
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66610.2 | Symbols: DAR7 | DA1-related protein 7 | chr5:2658... 1568 0.0
AT5G17890.1 | Symbols: CHS3, DAR4 | DA1-related protein 4 | chr... 503 2e-141
AT5G66620.1 | Symbols: DAR6 | DA1-related protein 6 | chr5:2658... 139 8e-32
AT5G66630.1 | Symbols: DAR5 | DA1-related protein 5 | chr5:2659... 124 2e-27
> AT5G66610.2 | Symbols: DAR7 | DA1-related protein 7 | chr5:26584774-26587782
FORWARD LENGTH=1900
Length=1900
Score = 1568 bits (849), Expect = 0.0
Identities = 1221/1389 (88%), Gaps = 71/1389 (5%)
Strand=Plus/Plus
Query 27 TTTCAGAGGATGTGGTGTCTGTCCTGCTTTCAACTTCCTTCCACTAAACATGATCCCTCT 86
||| |||| ||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 102 TTT-AGAGAATGTGGTGTTTGTCCTGCTTT-AA--ACCTTCCACTAAACATGATCCCTCT 157
Query 87 CAGGATCGTTTTGAAGCAGAAACTAATATTGTTACAGATATTTCACTGTATGAAGATGTC 146
||||||||||||||| |||||| ||||| ||||||| |||||| |||||||||||||||
Sbjct 158 GAGGATCGTTTTGAAGAAGAAACAAATATCGTTACAGGTATTTCTCTGTATGAAGATGTC 217
Query 147 ATCTTACGTC-----AG---AGAAGCTGATCAGATTGAATGGGCCATTCAAGATAGCTTC 198
|||||||||| || ||||||||||||||| |||||||| |||||||||||||||
Sbjct 218 ATCTTACGTCAGAGAAGATCAGAAGCTGATCAGATAGAATGGGCTATTCAAGATAGCTTC 277
Query 199 AAGCCC-CAAGAAACTACTCGTTGTCGTCAGCGTCAGCGAGAGGAGGATGATCAGATAGC 257
|| ||| ||||||||| |||| | | || |||||||||||||||||||||||||||||
Sbjct 278 AA-CCCGCAAGAAACTTCTCG-T-T-GT---CGTCAGCGAGAGGAGGATGATCAGATAGC 330
Query 258 GCTTGGTTTGCAATACGTGGAAGAAACTGAGCTTGATAAATC--T-GTG-ATTGTTGACG 313
|| |||||||||||| |||||||||||||||||||||||||| | ||| | | || |
Sbjct 331 GCGTGGTTTGCAATATGTGGAAGAAACTGAGCTTGATAAATCAGTTGTGGAC-GAAGAAG 389
Query 314 A---G-AG-TTTG-AA-A--G---AG-A-A-T--G--GCA-AAAG--AAA-GCA-GCAAT 349
| | || ||| || | | || | | | | | | |||| ||| | | |||||
Sbjct 390 ATCAGCAGCTTTCTAAGATTGTTGAGGAGAGTTTGAAGGAGAAAGGCAAAAGTAAGCAAT 449
Query 350 CTGGAGATGATCAAGTGGAAATTGACGAACAACATGCTCTAATTGTTCAGGAGAGTCTAT 409
|| ||||||||||||||||| ||| ||||| || ||||| || ||||||||||||||||
Sbjct 450 TTGAAGATGATCAAGTGGAAAATGATGAACAGCAAGCTCTGATGGTTCAGGAGAGTCTAT 509
Query 410 ACTTGGTGGAGCCTCCTCCTCGACTTGAAGAAGATAAAAACATGCCCCCAATACCTCCGC 469
|| ||||||||| | || ||| ||||||||||||||||||||| | ||||||||||||
Sbjct 510 ACATGGTGGAGCTTTCTGCTCAACTTGAAGAAGATAAAAACATTTCAACAATACCTCCGC 569
Query 470 TGAATGAAGATGAGCAGCTTCAGAAGGTTATTTGGGAAAGTTCCAAGGGTAAGGGCCAAA 529
|||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 570 TGAATGAAGATGCGCAGCTTCAGAAGGTTATTTGGGAAAGCGCGAAGGGTAAAGGCCAAA 629
Query 530 TAGAGCATTCCAAAGATCCAGTGGAAGAAGATG-AAATTCTTCCAAGGCCAGATCTCAAC 588
||||||||| ||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct 630 TAGAGCATTTCAAAGATCCAGTGGAAGAAGATGGAAAT-CTTCCAAGGGTAGATCTCAAC 688
Query 589 GTGAACCATCCTCGTAGCATATGTCG-TGGTTGCAACTCTGCGATTGAATATGGAAGATC 647
|| |||||||||| |||||||||| | ||||||||| |||||||||||||||||||||||
Sbjct 689 GTTAACCATCCTCATAGCATATGT-GATGGTTGCAAATCTGCGATTGAATATGGAAGATC 747
Query 648 TGTTAATGCCTTGGGTGGTAATTGGCATCCTGAATGTTTCTGTTGTCTTTATTGCGACAA 707
|||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 748 TGTTCATGCCTTGGGTGTTAATTGGCATCCTGAATGTTTCTGTTGTCGTTATTGCGACAA 807
Query 708 ACCAATCGCTATGCACGAGCTTTT-AAACACAAAAGGGAGGTGTCATATAACCTGCTACA 766
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 808 ACCAATCGCTATGCACGAG-TTTTCAAACACAAAAGGGAGGTGTCATATAACCTGCTACG 866
Query 767 AGCAGC-GTCACCCAAACTGCTATGTCTGCAAAAAGAAGTTTCCTTCAACCGAGGAAGGT 825
||| | |||||||||||||| ||||||||||||||||||||||| | | | |
Sbjct 867 AGC-GTAGTCACCCAAACTGCCATGTCTGCAAAAAGAAGTTTCCT------G-GTA-G-- 915
Query 826 AGAGAGTATAAACAACATTCCTTCTGGAAAGAAAAGTACTGCCCTTTTCATGAAGTTGAT 885
| | |||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 916 A-A-AGTATAAAGAACATCCCTTCTGGAAGGAAAAGTACTGCCCTTTTCATGAAGTTGAT 973
Query 886 GGAACTCCCAAGTGTTGCAGTTGTGAAAGATTAGAGCCCTGGGGAACGAAGTATGTAATG 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 GGAACTCCCAAGTGTTGCAGTTGTGAAAGATTAGAGCCCTGGGGAACGAAGTATGTAATG 1033
Query 946 CTTACTGACAATCGGTGGCTATGCGTAAAATGTATGGAATGCGCAGTTATGGATACTTAT 1005
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1034 CTTGCTGACAATCGGTGGCTATGCGTAAAATGTATGGAATGCGCGGTTATGGATACTTAT 1093
Query 1006 GAATGCCAACCTTTGCACTTTAAAATCCGTGAATTCTTCGAAAGCTTAAACATGAAGGTT 1065
|| |||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1094 GAGTGCCAACCATTGCACTTTGAAATCCGTGAATTCTTCGGAAGCTTAAACATGAAGGTT 1153
Query 1066 GAGAAAGAATTTCCTCTTCTTTTGGTGGAGAAAGAAGCGCTGAATAAAGCTGAGGTGCAA 1125
||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1154 GAGAAAGAATTCCCTCTTCTTTTGGTGGAGAAAGAAGCGCTGAAAAAAGCTGAGGCGCAA 1213
Query 1126 GAAAAGATTGACAATCAGCATGGGACGGTAACCAGAGGTATTTGTTTGTCTGAAGAGCAG 1185
|||||||| ||||||||||||||| ||||||||||||||||| ||||||||| ||||
Sbjct 1214 GAAAAGATCGACAATCAGCATGGGGTTGTAACCAGAGGTATTTGCCTGTCTGAAGGGCAG 1273
Query 1186 ACTGTCAATAATGTCTT-AAAAAGGCCAAACATGGGGCCGAACAATGAGCTAGTGGGCAT 1244
| |||||||| |||||| |||||| |||| ||||||||| ||| |||||||| || |
Sbjct 1274 ATTGTCAATAGTGTCTTTAAAAAG-CCAACCATGGGGCCAAACGGCGAGCTAGTAAGCTT 1332
Query 1245 GGTTACAGAATCTCAAAGGGTTATTGGTGGTTGTGAGGTCATTGCAATTCTTATCATTTA 1304
|| ||||||| |||||| |||| ||||||| |||||||||| ||||||||| ||| | ||
Sbjct 1333 GGGTACAGAACCTCAAAAGGTTGTTGGTGGATGTGAGGTCACTGCAATTCTCATCCTATA 1392
Query 1305 TGGACTGCCTAGGTTACTAACTGGATATATCTTGGCCCATGAGATGATGCATGCTTGGCT 1364
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1393 TGGACTTCCTAGGTTACTAACTGGATATATCTTGGCTCATGAGATGATGCATGCTTGGCT 1452
Query 1365 AAGACTCAA 1373
||||||||
Sbjct 1453 TAGACTCAA 1461
Score = 276 bits (149), Expect = 6e-73
Identities = 163/170 (96%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 1538 TTTGCAAGAATCAGATAGAAACAGACGATTCACCGGTCTACGGTGTTGGATTCAAGAAAG 1597
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1731 TTTGCAAGGATCAGATAGAAACAGACGATTCACCGGTCTACGGTGTTGGATTCAGGAAAG 1790
Query 1598 TTAACCAGATGGTCTCAGACTCCAGCCTCCATAAAATCCTGAAAAGTATTCAACATTCGA 1657
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1791 TTAACCAGATGGTCTCAGACTCCAGCCTCCATAAAATCCTGAAAAGTATTCAACACTGGA 1850
Query 1658 AGAAACCAGATTCAAATCTTTGAAGCAGCTAATATAGGACACATCGAAAC 1707
|||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1851 CGAAACCAGATTCAAATCTTTGAAGCACCTAATATAGGACAAATCGAAAC 1900
Score = 182 bits (98), Expect = 1e-44
Identities = 118/127 (93%), Gaps = 3/127 (2%)
Strand=Plus/Plus
Query 1411 GAAGAAGGAATATGCCAAGTGCTAGGCCACATGTGGTTGGAGTCACAGACATACTCCTCT 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1571 GAAGAAGGAATATGCCAAGTGCTAGGCCACATGTGGTTGGAGTCACAGACATACTCCAGT 1630
Query 1471 TCTGCAGCTGCATCATCAGCTTCTTCTTCTTCTTCGAGCACTCCAGCTGCTAGTGCAACa 1530
|||||||||||||||||||||||||||||||| ||| ||||||||||||| |||| ||
Sbjct 1631 TCTGCAGCTGCATCATCAGCTTCTTCTTCTTC---GAGGACTCCAGCTGCTAATGCATCA 1687
Query 1531 aaaaaaG 1537
|| ||||
Sbjct 1688 AAGAAAG 1694
> AT5G17890.1 | Symbols: CHS3, DAR4 | DA1-related protein 4 | chr5:5916970-5923355
FORWARD LENGTH=5082
Length=5082
Score = 503 bits (272), Expect = 2e-141
Identities = 742/957 (78%), Gaps = 80/957 (8%)
Strand=Plus/Plus
Query 589 GTGAA-CCATCCTCGTAGCATATGTCGTGG-TTGCAACTCTGCGATTGAATATGGAAGAT 646
||||| || ||||| ||||| ||| | || |||||| ||||| |||||| |||||| ||
Sbjct 3742 GTGAATCC-TCCTCTTAGCAAATG-CAAGGATTGCAAATCTGCAATTGAAGATGGAATAT 3799
Query 647 CTGTTAATGCCTTGGGTGGTAATTGGCATCCTGAATGTTTCTGTTGTCTTTATTG-CGAC 705
|| | ||||||| ||| | |||||||||| ||||||||||||| ||| ||| ||
Sbjct 3800 CTATCAATGCCTACGGTTCTGTTTGGCATCCTCAATGTTTCTGTTGCCTTCGTTGTCG-G 3858
Query 706 AAACCAATCGCTATGCACGAGCTTTTAAACACAAAAGGGAGGTGTCATATAACC-TGCTA 764
| || || |||||| ||||| ||| | || || ||| | || ||| | |||| |||||
Sbjct 3859 GAGCCTATTGCTATGAACGAGATTTCAGACTTAAGAGGAATGTATCACA-AACCTTGCTA 3917
Query 765 CAAGCAG---CGTCACCCAAACTGCTATGTCTGC-AAAAAGAAGTTTCCTTC-AACCGAG 819
|||| || ||||| || || |||||||||||| ||||| ||| |||| || || | |
Sbjct 3918 CAAGGAGCTCCGTCATCCGAATTGCTATGTCTGCGAAAAA-AAGATTCC-TCGTACTGCG 3975
Query 820 GAAGGTAGAGAGTATAAACAACATTCC-TTCTGGAAAGAAA-AGTACTGCCCTTTTCATG 877
|||||| | |||| | | || ||| ||||||| |||| | |||||||||| |||||
Sbjct 3976 GAAGGTTTAAAGTACCATGAGCA-TCCGTTCTGGATGGAAACA-TACTGCCCTTCTCATG 4033
Query 878 AAGTTGATGGAACTCCCAAGTGTTGCAGTTGTGAAAGATTAGAGCCCTGGGGAACGA-AG 936
| | ||||||||||||||| ||||| || |||||||||||||||| || ||||| | ||
Sbjct 4034 ATGGTGATGGAACTCCCAAATGTTGTAGCTGTGAAAGATTAGAGCATTGCGGAAC-ACAG 4092
Query 937 TATGTAATGCTTACTGACAATCGGTGGCTATG-CGTAAAATGTATGGA-ATGCGCAG-TT 993
|||||||||||| | || ||| |||||||| || | |||||||||| | |||| | ||
Sbjct 4093 TATGTAATGCTTGCAGATTTTCGATGGCTATGTCG-AGAATGTATGGACA-GCGC-GATT 4149
Query 994 ATGGATACTTATGAATGCCAACCTTTGCACTTTAAAATCCGTGAATTCTTCGAAAGCTTA 1053
|||||| || ||||||||||||||||||||||| |||||||||||||||| || |||||
Sbjct 4150 ATGGATTCTGATGAATGCCAACCTTTGCACTTTGAAATCCGTGAATTCTTTGAGGGCTTA 4209
Query 1054 AACATGAAGGTTGAGAAAGAATTTCCTCTTCT-TTTGGTGGAGAAAGAA-GCGCTGAATA 1111
|||||||| ||||| ||||||||||| || | ||||||||||||| || || |||||||
Sbjct 4210 CACATGAAGATTGAGGAAGAATTTCCTGTT-TATTTGGTGGAGAAA-AATGCTCTGAATA 4267
Query 1112 AAGCTGAGGTGCAAGAAAAGATTGACAATCA----G--CA-TG--GGACGGTAACCAGAG 1162
|||||||| | |||| ||||||||||| || | || || || |||| |||||
Sbjct 4268 AAGCTGAGAAGGAAGAGAAGATTGACAAACAGGGGGATCAGTGTCTGATGGTAGTCAGAG 4327
Query 1163 GTATTTGTTTGTCTGAAGAGCAGACTGTCAATAA-TGTCTTAAAAAGG-CCAAACATGG- 1219
||||||| | ||||||||||||| |||| | || |||| | | |||| || | ||
Sbjct 4328 GTATTTGCCTATCTGAAGAGCAGATTGTC-ACAAGTGTC-TCACAAGGAGTAAGGA-GGA 4384
Query 1220 GGCCGAACAATG-AGCTAGTGGGCATGGTTACAGAATCTCAAAGGGTTATT-GGTGGTTG 1277
| ||| || | || || | | | ||||||||| |||||||||||| || | | ||
Sbjct 4385 TGTTGAATAA-GCAGATACTAGATACGGTTACAGAGTCTCAAAGGGTTGTTCGCAAG-TG 4442
Query 1278 TGAGGTCATTGCAATTCTTATCATT-TATGGACTGCCTAGGTTACTAACTGGATATATCT 1336
||||||| ||||||||| ||| || ||||| || ||||||||||| || ||||||||||
Sbjct 4443 CGAGGTCACTGCAATTCTCATC-TTATATGGGCTTCCTAGGTTACTCACAGGATATATCT 4501
Query 1337 TGGCCCATGAGATGATGCATGCTTGGCTAAGACTCAACGAG--ACATTGAGAAACCTCTC 1394
|||||||||||||||||||||||| || |||||||| | | ||| | ||| | | |
Sbjct 4502 TGGCCCATGAGATGATGCATGCTTATCTTAGACTCAATG-GTTACA--G-GAATC-T-T- 4554
Query 1395 AA-AGTTAAAGGAATCT-GAAGAAGGAATATGCCAAGTGCTAGGCCACATGTGGTTGGAG 1452
|| | | || ||| ||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 4555 AACA-T----GGT-TCTTGAAGAAGGATTATGCCAAGTGTTAGGCTACATGTGGTTGGAG 4608
Query 1453 TCACAGACATAC-TCCTCTTCTGC-AGCTGC-ATCA-TCAGCTTCTTCTTCTTCTTC 1505
| ||||||||| | | || || | |||| | || | ||||||||||||||||||
Sbjct 4609 TGTCAGACATACGT--T-TT-TGATA-CTGCCA-CAAT-AGCTTCTTCTTCTTCTTC 4658
> AT5G66620.1 | Symbols: DAR6 | DA1-related protein 6 | chr5:26588585-26592006
FORWARD LENGTH=1935
Length=1935
Score = 139 bits (75), Expect = 8e-32
Identities = 100/112 (89%), Gaps = 2/112 (2%)
Strand=Plus/Plus
Query 1538 TTTGCAAGAATCAGATAGAAACAGACGATTCACCGGTCTACGGTGTTGGATTCAAGAAAG 1597
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||
Sbjct 1811 TTTGCAAGAATCAGATAGAAACAGACGATTCACCGGTCTACGGTCTTGGATTCAGGACAG 1870
Query 1598 TTAACCAGATGGTCTCAGACTCCAGCCTCCATAAAATCCTGAAA-AGTATTC 1648
||||| ||||||| || ||||||||||||| ||| ||||||| || ||||
Sbjct 1871 TTAACGAGATGGTGACAAACTCCAGCCTCCAGGAAACCCTGAAAGAG-ATTC 1921
> AT5G66630.1 | Symbols: DAR5 | DA1-related protein 5 | chr5:26592648-26595922
FORWARD LENGTH=2412
Length=2412
Score = 124 bits (67), Expect = 2e-27
Identities = 83/91 (91%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 1538 TTTGCAAGAATCAGATAGAAACAGACGATTCACCGGTCTACGGTGTTGGATTCAAGAAAG 1597
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||| || ||
Sbjct 2057 TTTGCAAGAATCAGATAGAAACAGACGAATCACCGGTCTACGGTCTTGGATTCAGGACAG 2116
Query 1598 TTAACCAGATGGTCTCAGACTCCAGCCTCCA 1628
||||| ||||||| || |||||||||||||
Sbjct 2117 TTAACGAGATGGTGACAAACTCCAGCCTCCA 2147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86344937400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5