BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496943
Length=2461
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66600.4 | Symbols: | Protein of unknown function, DUF547 |... 2905 0.0
> AT5G66600.4 | Symbols: | Protein of unknown function, DUF547
| chr5:26575000-26578826 REVERSE LENGTH=2414
Length=2414
Score = 2905 bits (1573), Expect = 0.0
Identities = 1783/1884 (95%), Gaps = 16/1884 (1%)
Strand=Plus/Plus
Query 583 TGCCAGCTTTCCAGAAAAGAAAAGAGTTGAGGGAGATAAAACCTCAAACAGTTCTCATGA 642
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 542 TGCCAGCTTTCCAGAAAAGAAAAGAGTTGAAGGAGATAAAACCTCAAATAGTTCTCATGA 601
Query 643 AGCCTCTCAACGAATGAAGCTGGACATGGGGCGTTCAAATGAATCAAAGCGTAATCAATA 702
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 602 AGCCTCTCAACGAATGAAGCTGGACATGGGACGTTCAAATGAATCAAAGCATAATCAATA 661
Query 703 TCATTCAAACACCGAAACTTCATTGAAGCAAGAGATTACGCAGCTCGAGACAAGATTAGA 762
|||||||||||| || ||||||||||||||||||||||| || ||||||||||||||| |
Sbjct 662 TCATTCAAACACGGAGACTTCATTGAAGCAAGAGATTACTCACCTCGAGACAAGATTACA 721
Query 763 AGATCAGTTTAAGATTCGTTGTGCATTAGAGAAAGCGTTAAGTTATCGAACAGCCTCTTC 822
||||||||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 722 AGATCAGTTTAAGGTTCGTTGTGCATTAGAGAAAGCCTTAGGTTATCGAACAGCATCTTC 781
Query 823 TTACGTACTGACTGAAACAAACCACATTGCCATGCCTAAGACAGCTACTGATTTAATCAA 882
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 782 TTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAGCCAGCTACTGATTTAATCAA 841
Query 883 AGATGTTGCGGTGTTGGAGATGGAAGTTATACATTTGGAACAGTATCTTCTTTCATTATA 942
||| ||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 842 AGACGTTGCGGTGCTCGAAATGGAAGTTATACATTTGGAACAGTATCTTCTTTCATTATA 901
Query 943 TAGAAAAGCCTTTGAGCAGCAAATCTCTTCTGTATCTCCAAATTCAGAGAGCAAGAAGCC 1002
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 902 CAGAAAAGCCTTTGAGCAGCAAATCTCTTCTGTATCTCCAAATTTAGAGAACAAGAAGCC 961
Query 1003 CAAATCTCCTCCTGTTACAACCCCTAGAAGGCGGCTAGATTTTTCTGAAGATGATGATAC 1062
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 962 AAAATCTCCTCCTGTTACAACCCCTAGAAGGCGTCTAGACTTTTCTGAAGATGATGATAC 1021
Query 1063 CCCCTCGAAAACAAATCAACACACAGATCCTCTGCTTGATGATAATCAAAATCAATCAAA 1122
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1022 CCCCTCGAAAACAGATCAACACACAGTTCCTCTGCTTGATGATAATCAAAATCAATCAAA 1081
Query 1123 GAAAACAGAGATTCCTGCGGTTGACCAAGACCAGATGGACCCCAATTTTCGTCGTAGCCA 1182
||||||||||||| |||||||||||| ||||||||||||||||| |||||| ||||| ||
Sbjct 1082 GAAAACAGAGATTGCTGCGGTTGACCGAGACCAGATGGACCCCAGTTTTCGCCGTAGTCA 1141
Query 1183 CTCTCAACGTTCGGCATTTGAGAGTAGAAAAGCTTCTCCAGAAGATTCTTGGAGTAAAGC 1242
|||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||
Sbjct 1142 CTCTCAACGTTCGGCATTTGGGAGTAGAAAAGCTTCTCCCGAAGATTCTTGGGGTAAAGC 1201
Query 1243 CATCCGCTCTTGTCACTCCCAACCGCTGTATGTGCAGAATGGAGA-AATTCTAATCAGTC 1301
|| ||||||||||||||| || || |||||||||||||||||||| || ||||||||||
Sbjct 1202 CAGCCGCTCTTGTCACTCACAGCCACTGTATGTGCAGAATGGAGATAA-CCTAATCAGTC 1260
Query 1302 TAGCTGAACATCTTGGCACCCGAATCTCGGATCATGTTCCAGAAACACCCAACAAGTTAT 1361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TAGCTGAACATCTTGGCACCCGAATCTCGGATCATGTTCCAGAAACACCCAACAAGTTAT 1320
Query 1362 CTGAAGGAATGGTCAAGTGTATGTCAGAAATATACTGCAAGCTTGCAGAGCCACCTTCTG 1421
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CTGAAGGAATGGTCAAGTGCATGTCAGAAATATACTGCAAGCTTGCAGAGCCACCTTCTG 1380
Query 1422 TACTACATCGGGGGCTTTCGTCTCCAAACTCATCTTTATCATCGAGTGCATTTTCGCCCT 1481
| |||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1381 TGCTACATCGTGGGCTTTCATCTCCAAACTCGTCTTTATCATCAAGTGCATTTTCGCCCT 1440
Query 1482 CTGACCAATACGATACATCGAGCCCTGGATTCGGAAACAACTCCTCTTTTGATGTTCGGT 1541
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1441 CTGACCAATACGATACATCGAGCCCTGGATTCGGAAACAGCTCCTCTTTTGATGTTCGGC 1500
Query 1542 TAGACAACTCTTTCCATGTAGAAGGAGaaaaaaaCTTCAGTGGACCTTACAGCAGCATTG 1601
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1501 TAGATAACTCTTTCCATGTAGAAGGAGAAAAGGACTTCAGTGGACCTTACAGCAGCATTG 1560
Query 1602 TTGAAGTGCTTTGCATTTACAGAGACGCCAAAAAAGCCAGTGAGGTCGAAGATCTTCTGC 1661
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1561 TTGAAGTGCTTTGCATTTACAGAGACGCCAAAAAGGCCAGTGAGGTGGAAGATCTTCTGC 1620
Query 1662 AAAACTTCAAGTCACTAATTAGTAGATTGGAGGAAGTCGATCCAAGGAAGTTGAAACATG 1721
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 AAAACTTCAAGTCACTTATTAGTAGATTGGAGGAAGTCGATCCAAGGAAGTTGAAACATG 1680
Query 1722 AAGAGAAGCTAGCGTTTTGGATAAATGTGCACAATGCACTTGTGATGCATGCTTTTTTAG 1781
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1681 AAGAGAAGCTAGCGTTTTGGATAAATGTGCACAATGCACTTGTGATGCATGCGTTTTTAG 1740
Query 1782 CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTGCTACTCAAGGCTGCATATA 1841
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1741 CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGGCTGCATATA 1800
Query 1842 ATGTTGGTGGATACACAGTTAGCGCGGAAGCTATACAAAGTTCGATTCTTGGATGCAAAA 1901
| |||||||| ||||| ||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1801 ACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGTTCGATTCTTGGGTGCAAAA 1860
Query 1902 TGTCTCATCCTGGACAGTGGCTTAGACTACTATTTGCTTCGAGAAAATTCAAAGCAGGAG 1961
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1861 TGTCTCATCCTGGACAGTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGG 1920
Query 1962 ATGAAAGATTAGCTTACGCAATTGATCATCCTGAGCCTCTCCTACACTTTGCACTTACTT 2021
|||||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||
Sbjct 1921 ATGAAAGATTAGCTTATGCAATCGATCATCCTGAGCCTCTCCTGCATTTTGCACTTACTT 1980
Query 2022 CAGGCAGCCACTCCGATCCCGCGGTTCGTGTATATACACCAAAAAGAATCCAGCAAGAGC 2081
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1981 CAGGCAGCCACTCCGATCCCGCGGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGC 2040
Query 2082 TTGAAACGTCGAAAGAAGAATACATAAGAATGAACTTAAGCATACACAAGCAGAGAATCC 2141
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 2041 TTGAAACGTCGAAAGAAGAGTACATAAGAATGAACTTAAGCATACGCAAGCAGAGAATCC 2100
Query 2142 TATTGCCAAAGCTTGTGGAAACGTTTTCAAAAGACTCAGGTTTATGTCCTGCGGGTTTAA 2201
||||||||||||||||||| |||||| |||||||||| ||||||||||| |||||||| |
Sbjct 2101 TATTGCCAAAGCTTGTGGAGACGTTTGCAAAAGACTCCGGTTTATGTCCGGCGGGTTTGA 2160
Query 2202 CAGAGATGGTTAACCGGAGTATACCGGAGTCTTCAAGGAAATGTCTAAAGAGATGTCAAT 2261
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2161 CAGAGATGGTTAACCGGAGTATACCGGAGTCTTCAAGGAAATGTGTAAAGAGATGTCAAT 2220
Query 2262 CTAGTA---GTAAACCACGCAAGCCTATTGATTGGATCCCTCACAGCTTTACATTTAGAT 2318
|||||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 2221 CTAGTACTAGTAAACCACGAAAGACAATTGATTGGATCCCTCACAGCTTTACATTTAGAT 2280
Query 2319 ATCTTATTCTTAGAGAAGCTGCCAAATGAAATTGTTC-AAGGATTCatatatatatatat 2377
||||||||||||||||||||||||||||||||| ||| ||| ||||||| |||||||
Sbjct 2281 ATCTTATTCTTAGAGAAGCTGCCAAATGAAATTATTCCAAG-ATTCATA-ATATATA--- 2335
Query 2378 aagagagtgagagtgtgtgtgtatatataagatatCGCTGTCCATGTCCCCACTTTCTGA 2437
|| || ||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 2336 --GA-AG--AGAGTGTGTGTATATATATAAGATATCGCTGTCTATGTCCCCACTTTCTGA 2390
Query 2438 TTATGATAATGTTGTTTCTGTCTC 2461
|||| |||||||||||||||||||
Sbjct 2391 TTATTATAATGTTGTTTCTGTCTC 2414
Score = 455 bits (246), Expect = 1e-126
Identities = 291/310 (94%), Gaps = 13/310 (4%)
Strand=Plus/Plus
Query 1 ACTTTGTCTATTTTGATTTTGACCATCTATGTAGATTTCTAGctctctctctcttttttt 60
|||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||
Sbjct 1 ACTTTGTCTATTTTGATTTTGACCATGTATGTAGATTTCTAG--CTCTCTC-CTTTTTTT 57
Query 61 GGCCGATTTGGTTGAGAATTTGACGACGACTCGTGGGGTCGTGTACACACATTGGTGACT 120
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 58 GGCCGATTTGGTTGAGAATTTGACGACGACTCGTGGGGTCGTGTACACA--TTGGTGACT 115
Query 121 GGTCTTTTGACACGAGTCGCCTCTCTTTTTCTCACTACC-ATTTCCATGAAAACATGAGC 179
||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 116 GGTCTTTTGACACGAGTCGCCTCTCTTCTTCTCCCTACCCATTTCCATGAAAACATGAGC 175
Query 180 CATAGCTAACttttttttCTTCAATTGAA-CCCACCACGCTTCTTTTGT-CACTTTTTAA 237
|||||||||||||| || ||||||||||| ||||||||||||||||||| || |||||||
Sbjct 176 CATAGCTAACTTTTCTT-CTTCAATTGAAACCCACCACGCTTCTTTTGTTCA-TTTTTAA 233
Query 238 TGTTAAAAGCTTCCTCCTTTATTGCTAAAAAGATTGAAGATTCGCAAGTTT--ATAGTTT 295
| || ||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 234 TATTTAAAGCTTCCTCCTTTATTGCTAAAA-GATTGAAGATTCGCAAGTTTTTATAGTTT 292
Query 296 CCGTTGGCCT 305
||||||||||
Sbjct 293 CCGTTGGCCT 302
Score = 158 bits (85), Expect = 3e-37
Identities = 163/196 (83%), Gaps = 23/196 (12%)
Strand=Plus/Plus
Query 405 CAGCAGCTCTGCTTTTTGGATTGGTGACACTAATTGTTGCTACAATCTCTTCAAGCATCT 464
||| |||||||| |||||| | |||||| ||||||| |||||| |||||| || ||| |
Sbjct 306 CAGAAGCTCTGC--TTTGGA-TAGTGACA-TAATTGTCGCTACAGTCTCTTGAAACATTT 361
Query 465 ACTGTATCTCTTTTGCTAAGGAGAAAATAGTCAGCTCCTTT-T-G------TG-GACAAA 515
||||| |||||| ||||||||||||| ||||||||||||| | | || ||||||
Sbjct 362 GCTGTAACTCTTTAGCTAAGGAGAAAA-AGTCAGCTCCTTTGTGGTCATTCTGAGACAAA 420
Query 516 TGGGATTTGGAGTA---GGT---GGT-G--GAATGTTGGATTTGAGGATTGTCCAAAATC 566
|||||||||||||| ||| ||| | ||||||||||||||||||||||||||||||
Sbjct 421 TGGGATTTGGAGTAGGTGGTGGAGGTGGTAGAATGTTGGATTTGAGGATTGTCCAAAATC 480
Query 567 ACAAGCGTTCAAAGAG 582
||||||||||||||||
Sbjct 481 ACAAGCGTTCAAAGAG 496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122106339262
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5