BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496947
Length=758
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66580.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1118 0.0
> AT5G66580.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G50800.1);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants
- 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink). | chr5:26572631-26573408 FORWARD LENGTH=778
Length=778
Score = 1118 bits (605), Expect = 0.0
Identities = 711/762 (93%), Gaps = 8/762 (1%)
Strand=Plus/Plus
Query 1 ACAACTCTTAAGAATAAACTTAAACTCACGAGTCAAGTCAATAGAGTTTAACGTTTTCAA 60
|||||||||||||||||| |||||||||||||||||||| | |||||| |||||||||||
Sbjct 18 ACAACTCTTAAGAATAAATTTAAACTCACGAGTCAAGTC-AGAGAGTTAAACGTTTTCAA 76
Query 61 AGACACATAAAC-AAAAATGGGAGCGTGCGTTTCACGTGAATCTTTGAGGAGCGATTCAG 119
|||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 77 AGACACTTAAACTAAAAATGGGAGCGTGCGCTTCACGTGAATCTTTGAGGAGTGATTCAG 136
Query 120 CGAAGCTTATACTCCTCGACGGGACTTTACAAGAGTTCTCATCTCCGGTCAAAGTTTGGC 179
||||||| ||| | |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 137 CGAAGCTGATATTACTCGACGGTACTTTACAGGAGTTCTCATCTCCGGTCAAAGTTTGGC 196
Query 180 AGATTCTACAGAAGAACCCTACGAGTTTCGTCTGTAACTCAGACGAAATGGACTTCGACG 239
||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 AGATTTTGCAAAAGAACCCTACGAGTTTCGTCTGTAACTCAGACGAAATGGACTTCGACG 256
Query 240 ACGCAGTTTCAGCTGTCGCTGGCAACGAAGAGCTCCGATCAGGGCAGCTTTACTTTGTCT 299
||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 257 ACGCAGTTTCAGCTGTCGCCGGCAACGAAGAGCTCCGATCAGGGCAGCTCTATTTTGTCT 316
Query 300 TGCCTCTGACGTGGCTCAATCATCCGCTACGGGCGGAGGAAATGGCGGCCTTGGCTGTTA 359
| ||||||||||||||||| |||||| || ||||||||||||||||||||||||| || |
Sbjct 317 TACCTCTGACGTGGCTCAACCATCCGTTAAGGGCGGAGGAAATGGCGGCCTTGGCCGTGA 376
Query 360 AAGCTAGTTTGGCGTTGACCAAGAGCGGCGGCGTTGGTTGGGTTTCCGGTGACGACGATG 419
||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 377 AAGCTAGTTCGGCGTTGACCAAGAGCGGTGGCGTCGGTTGGGTTTCCGGCGACGACGATG 436
Query 420 TAGCGATATCGGAAAAAACTTACCAAAAGAAAAACATCGCCGGAGTAAAGACGAACGGTG 479
|| ||| |||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 437 TAACGACATCGGAAAAAACTTACCAAAAGAAAAACATTGCCGGAGTTAAGACAAACGGTG 496
Query 480 GTGGCGGAAGAGGTTGTGGTAAAGGGAAGAGGCGATTCACGGCTAATTTGACCACGATCG 539
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 497 GTGGCGGAAGAGGTTGCGGTAAAGGGAAGAGGCGATTCACGGCTAATTTGAGCACGATCG 556
Query 540 CCGAGTAGGGTCAATTTAGTCATTTTCAGaaaaaaaTTCGACCGACGTATAAATTGTAAT 599
|||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||
Sbjct 557 CCGAGTAGGGTCAATTTAGTCATTTTGAGAAAAA--TG-GACCGACGTATAAATTGTAAT 613
Query 600 TAGAGATGTTTGACtttttttttttGGAGAAAAAATTATCCAGTAGAt-ttttttt--AT 656
|||| |||||||||||||||||| ||||||| |||||||||||||||| ||||||| ||
Sbjct 614 TAGAAATGTTTGACTTTTTTTTTATGGAGAACAAATTATCCAGTAGATGTTTTTTTTTAT 673
Query 657 TGCTCAGTAATTGAGAAATGGGCACGAGGATGAAGATATTCCGTTGATGTGATTCCAATC 716
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 674 TGCTCAGTAATTGAGAAATGGGCACGAGGATGAAGATATTCCATTGATGTGATTCCAATC 733
Query 717 TTAATAACAATGCAATTTCGTAGCTATATGAATCCTTTCATG 758
||||||||| ||||||||||||||||||| |||| |||||||
Sbjct 734 TTAATAACATTGCAATTTCGTAGCTATATAAATCATTTCATG 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36821629751
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5