BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496949
Length=2071
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66560.1 | Symbols: | Phototropic-responsive NPH3 family pr... 2242 0.0
AT5G66558.1 | Symbols: | other RNA | chr5:26563964-26566774 RE... 1677 0.0
> AT5G66560.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr5:26564188-26566853 FORWARD LENGTH=2378
Length=2378
Score = 2242 bits (1214), Expect = 0.0
Identities = 1485/1609 (92%), Gaps = 46/1609 (3%)
Strand=Plus/Plus
Query 18 TCTGTTTCTCATGATCTAGGATTCCAATTCCTTCCCCTTCCCCTTCTTGTTCTCTCCATA 77
||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 30 TCTCTTTCTTATGATTTAGGATTCCAATTCCTTCCCTTTCCCCTTCTTGTTCTCTCCATA 89
Query 78 -T-T-ATCATTAGAAAGAGAT--AG-G-CTATTGttttttt-ctgtctttttttCAGAGC 129
| | || |||||||||||| || | | |||||||||| ||||| || | ||
Sbjct 90 TTCTCCTCTTTAGAAAGAGATAGAGAGAGTCTTGTTTTTTTCCTGTC-TTGAGT--GATA 146
Query 130 CTTTCTTC--A---CAGAGTTGTTGTCTCCATTAATGGCGTCAGAGAAATCTAGCTCCAA 184
||| ||| | | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 147 TTTTTTTCAGAGCCCTGAGTTGTTGTCTCCATTAATGGCGTCAGAGAAATCTACCTCCAA 206
Query 185 GGGCCAAGCATGGTTTTGTACAACTGGCTTACCTAGCGACATTGAAATCGAAGTTGATCA 244
||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| |
Sbjct 207 GGGCCAAGCATGGTTTTGTACGACTGGGTTACCTAGTGACATTGAAATCGAAGTTGATGA 266
Query 245 CATGACATTCCATCTCCATAAGTTTCCACTCATGTCAAAGAGCAGGAAACTTCACAGGTT 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 CATGACATTCCATCTCCATAAGTTTCCACTCATGTCAAAGAGCAGGAAACTTCACAGGTT 326
Query 305 GATTACAGAGCAAGAGACTAGATC-T--TGTTCCATGGCGCTAATAACTGAAACGGACCC 361
|||||||||||||||||||||||| | | |||||||||||| ||||||| || |||||
Sbjct 327 GATTACAGAGCAAGAGACTAGATCTTCCTCTTCCATGGCGCTGATAACTGTAATAGACCC 386
Query 362 AAAAGTAGAAGAGAGTGACAAGAAAGGTAAAGGCCATGAAATCGAGGACGATgaagaaaa 421
|||||||||||||| ||||||||||||||||||||||||||||||||||||| | || |
Sbjct 387 AAAAGTAGAAGAGACTGACAAGAAAGGTAAAGGCCATGAAATCGAGGACGAT--A-AAGA 443
Query 422 agaagaagaagtagacgaagagcaagagatcgaagaaaaTGGCTATCCTCACATAAAACT 481
|||||||||||| | |||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 444 AGAAGAAGAAGT-G--GAAGAGCAGGAGATCGAAGAAAATGGTTATCCTCACATCAAACT 500
Query 482 CGAGGACTTCCCCGGAAGTTCAGAGAGCTTTGAGATGGTGGCCAAGTTCTGCTACGGCGT 541
|||||| || ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 501 CGAGGATTTTCCCGGTAGTTCAGAGAGCTTTGAGATGGTGGCGAAGTTCTGCTACGGCGT 560
Query 542 CAAGATGGACCTCTCTGCTTCCACTGTTGTTCCACTTCGTTGCGCCGCCGAACACCTCGA 601
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 561 CAAGATGGACCTCTCTGCTTCCACCGTTGTTCCACTTCGTTGCGCCGCCGAACACCTCGA 620
Query 602 AATGACGGAAGAGTATTCACCGGATAACCTAATTTCCAAGACTGAGAGGTTTCTCTCTCA 661
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 621 AATGACGGAAGAGTATTCACCAGATAACCTAATTTCCAAGACTGAGAGGTTTCTCTCTCA 680
Query 662 TTCCGTCTACAAGAGCTTGCGTGAATCCATTAAAGCTCTCAAAGCTTGTGAGTCAGTCTC 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 TTCCGTCTACAAGAGCTTGCGTGAATCCATTAAAGCTCTCAAAGCTTGTGAGTCAGTCTC 740
Query 722 TACTTTAGCCGGATCGCTTGGTATAACTGAACAGTGCATCGAGTCTATCGTCTCCAGAGC 781
| ||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 741 TCCTTTAGCCGGATCGCTTGGTATAACGGAACAGTGCATCGACTCTATAGTCTCCAGAGC 800
Query 782 TTCCTCAGCTGATCCTTCTCTCTTCGGTTGGCCTGTAAACGA------C------GG--- 826
|||||||||||||||||| |||||||||||||| |||||||| | ||
Sbjct 801 TTCCTCAGCTGATCCTTCACTCTTCGGTTGGCCAGTAAACGATGGCGGCGGAAGAGGAAA 860
Query 827 ------CGCCACCGATCTTCAACTAATCCCCGGCGGCGCAGCGAAATCTCGAAAGAAACC 880
|||||||||||| ||||| || ||||||||||| ||||||||||||||||||||
Sbjct 861 CATCTCCGCCACCGATCTGCAACTTATACCCGGCGGCGCGGCGAAATCTCGAAAGAAACC 920
Query 881 GAGTAGAGATTCGAACATGGAGCTGTGGTTTGAAGATCTGACGCAACTGAGTCTTCCGAT 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 GAGTAGAGATTCGAACATGGAGCTGTGGTTTGAAGATCTGACGCAACTGAGTCTTCCGAT 980
Query 941 CTTCAAAACTGTGATCCTATCAATGAAATCAGGAGATCTGAGCTCCGATATCATAGAGAG 1000
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 981 CTTCAAAACTGTGATCCTATCAATGAGATCAGGAGATCTGAGCTCCGATATCATAGAGAG 1040
Query 1001 CTGTTTAATTTGTTACGCTAAGAAGCACATTCCCGGAATTCTACGTTCTAACCGGAAACC 1060
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1041 CTGTTTGATTTGTTACGCTAAGAAGCACATTCCCGGGATTCTACGTTCTAACCGGAAACC 1100
Query 1061 GCCATCGTCATCTTCTACTGCAGTGTCAGAGAATGAACAGAGAGAACTACTGGAGACTAT 1120
||||||||||||||| || ||||| ||||||||||||||||||||||||||||| || ||
Sbjct 1101 GCCATCGTCATCTTCAACCGCAGTTTCAGAGAATGAACAGAGAGAACTACTGGAAACAAT 1160
Query 1121 AACCTCTAATCTTCCATTAGATAAAAGCTCAATCTCCTCAACAACGAGATTCCTCTTCGG 1180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1161 AACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCCTCAACAACGAGATTCCTCTTCGG 1220
Query 1181 CTTATTACGAACCGCAATCATCCTCAACGCCTCCGAGACTTGCCGTGATCTGCTGGAGAG 1240
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1221 CTTATTACGAACCGCAATCATCCTCAACGCCGCCGAGATTTGCCGTGATCTGCTGGAGAG 1280
Query 1241 AAAGATCGGAACACAGCTAGAGAGAGCCACACTCGATGACCTGCTCGTCCCTAGCTACTC 1300
|||||||||| | ||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 1281 AAAGATCGGATCGCAGCTAGAGAGAGCCACGCTCGACGATTTGCTCGTCCCTAGCTACTC 1340
Query 1301 ATACCTCAACGAGACTTTGTACGATGTTGATTTGGTAGAGAGAATCTTAGGTCACTTTCT 1360
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1341 ATACCTCAACGAGACTTTATACGATGTTGATTTGGTAGAGAGAATCTTAGGCCACTTTCT 1400
Query 1361 CGACACCTTGGAACAGTCAAACACCGCCGTAATCGAAGCTGACGGAAAATCTCCGTCGCT 1420
||||||||||||||| || ||||||||| || |||||| |||||||||||||||||||||
Sbjct 1401 CGACACCTTGGAACAATCCAACACCGCCATAGTCGAAGTTGACGGAAAATCTCCGTCGCT 1460
Query 1421 TATGCTCGTCGGGAAATTAATCGACGGATTTCTCGCTGAGATCGCATCCGACGCTAATCT 1480
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1461 GATGCTCGTCGGGAAATTAATCGACGGATTTCTCGCGGAGATCGCATCGGACGCTAATCT 1520
Query 1481 CAAATCGGATAAATTTTTCAATCTAGCCATCTCACTCCCAGATCAAGCTCGTCTCTACGA 1540
|||||||||||| || | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1521 CAAATCGGATAAGTTCTACAATCTAGCCATCTCACTCCCAGATCAAGCTCGTCTCTATGA 1580
Query 1541 TGACGGACTTTACAGAGCCGTCGACGTATATCTCAAGGCGCATCCATGG 1589
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1581 TGACGGACTTTACAGAGCCGTCGACGTATATCTCAAGGCGCATCCATGG 1629
Score = 501 bits (271), Expect = 1e-140
Identities = 295/307 (96%), Gaps = 0/307 (0%)
Strand=Plus/Plus
Query 1765 GAGAAGGACAGGTGGACGCTGGGAAATGGAAGAAGACGGTGAGAGAGAATCAGGTGCTTC 1824
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1901 GAGAAAGACAGGTGGACGCTGGGAAATGGAAGAAGACGGTTAGAGAGAATCAGGTGCTTC 1960
Query 1825 GCTTGGATATGGATACGATGAGGACGCGTGTTCACCGGTTAGAGAGAGAGTGCTCCAATA 1884
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 1961 GCTTGGATATGGATACGATGAGGACGCGTGTTCATCGGTTAGAGAGAGAGTGCTCGAACA 2020
Query 1885 TGAAGAAAGTGATCGCGAAGATTGATAAAGATGGTTCATCACCGGCGACGACGACTGATC 1944
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2021 TGAAGAAAGTGATCGCGAAGATTGATAAGGAAGGTTCATCACCGGCGACGACGACTGATC 2080
Query 1945 GGCCGAGAAGTTGGTCGATTACCAAAAAGTTGGGATGTAAATTCAAGACACAGGTCTGCG 2004
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2081 GGCCGAGAAGTTGGTCGATTACCAAAAAATTCGGATGTAAATTCAAGACACAGGTCTGCG 2140
Query 2005 ATTCGCACGAGGCTACGATGGTTGATCATAGATCACGACGGTCTTGAATTGTTTTCGATT 2064
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2141 ATTCACACGAAGCAACGATGGTTGATCATAGATCACGACGGTCTTGAATTGTTTTCGATT 2200
Query 2065 GATTTTA 2071
|||||||
Sbjct 2201 GATTTTA 2207
Score = 237 bits (128), Expect = 3e-61
Identities = 138/143 (97%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 1592 TGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAGCCGTCG 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 TGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAGCCGTCG 1741
Query 1652 TACAAGTTCTCTTCTTCGAGCAGTTACAGCTCCGGCATGCGATCGCCGGGACGTTATTAG 1711
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1742 TACAAGTTCTCTTCTTCGAGCAGTTACAACTCCGGCACGCGATCGCCGGGACGTTATTAG 1801
Query 1712 CAGCTCAATCTCCGTCTCCGTCA 1734
| |||||||| |||||| |||||
Sbjct 1802 CTGCTCAATCGCCGTCTACGTCA 1824
> AT5G66558.1 | Symbols: | other RNA | chr5:26563964-26566774
REVERSE LENGTH=2719
Length=2719
Score = 1677 bits (908), Expect = 0.0
Identities = 1055/1123 (94%), Gaps = 21/1123 (2%)
Strand=Plus/Minus
Query 477 AAACTCGAGGACTTCCCCGGAAGTTCAGAGAGCTTTGAGATGGTGGCCAAGTTCTGCTAC 536
||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1886 AAACTCGAGGATTTTCCCGGTAGTTCAGAGAGCTTTGAGATGGTGGCGAAGTTCTGCTAC 1827
Query 537 GGCGTCAAGATGGACCTCTCTGCTTCCACTGTTGTTCCACTTCGTTGCGCCGCCGAACAC 596
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1826 GGCGTCAAGATGGACCTCTCTGCTTCCACCGTTGTTCCACTTCGTTGCGCCGCCGAACAC 1767
Query 597 CTCGAAATGACGGAAGAGTATTCACCGGATAACCTAATTTCCAAGACTGAGAGGTTTCTC 656
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1766 CTCGAAATGACGGAAGAGTATTCACCAGATAACCTAATTTCCAAGACTGAGAGGTTTCTC 1707
Query 657 TCTCATTCCGTCTACAAGAGCTTGCGTGAATCCATTAAAGCTCTCAAAGCTTGTGAGTCA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 TCTCATTCCGTCTACAAGAGCTTGCGTGAATCCATTAAAGCTCTCAAAGCTTGTGAGTCA 1647
Query 717 GTCTCTACTTTAGCCGGATCGCTTGGTATAACTGAACAGTGCATCGAGTCTATCGTCTCC 776
|||||| ||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1646 GTCTCTCCTTTAGCCGGATCGCTTGGTATAACGGAACAGTGCATCGACTCTATAGTCTCC 1587
Query 777 AGAGCTTCCTCAGCTGATCCTTCTCTCTTCGGTTGGCCTGTAAACGA------C------ 824
||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 1586 AGAGCTTCCTCAGCTGATCCTTCACTCTTCGGTTGGCCAGTAAACGATGGCGGCGGAAGA 1527
Query 825 GG---------CGCCACCGATCTTCAACTAATCCCCGGCGGCGCAGCGAAATCTCGAAAG 875
|| |||||||||||| ||||| || ||||||||||| |||||||||||||||
Sbjct 1526 GGAAACATCTCCGCCACCGATCTGCAACTTATACCCGGCGGCGCGGCGAAATCTCGAAAG 1467
Query 876 AAACCGAGTAGAGATTCGAACATGGAGCTGTGGTTTGAAGATCTGACGCAACTGAGTCTT 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 AAACCGAGTAGAGATTCGAACATGGAGCTGTGGTTTGAAGATCTGACGCAACTGAGTCTT 1407
Query 936 CCGATCTTCAAAACTGTGATCCTATCAATGAAATCAGGAGATCTGAGCTCCGATATCATA 995
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1406 CCGATCTTCAAAACTGTGATCCTATCAATGAGATCAGGAGATCTGAGCTCCGATATCATA 1347
Query 996 GAGAGCTGTTTAATTTGTTACGCTAAGAAGCACATTCCCGGAATTCTACGTTCTAACCGG 1055
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1346 GAGAGCTGTTTGATTTGTTACGCTAAGAAGCACATTCCCGGGATTCTACGTTCTAACCGG 1287
Query 1056 AAACCGCCATCGTCATCTTCTACTGCAGTGTCAGAGAATGAACAGAGAGAACTACTGGAG 1115
|||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1286 AAACCGCCATCGTCATCTTCAACCGCAGTTTCAGAGAATGAACAGAGAGAACTACTGGAA 1227
Query 1116 ACTATAACCTCTAATCTTCCATTAGATAAAAGCTCAATCTCCTCAACAACGAGATTCCTC 1175
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1226 ACAATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCCTCAACAACGAGATTCCTC 1167
Query 1176 TTCGGCTTATTACGAACCGCAATCATCCTCAACGCCTCCGAGACTTGCCGTGATCTGCTG 1235
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1166 TTCGGCTTATTACGAACCGCAATCATCCTCAACGCCGCCGAGATTTGCCGTGATCTGCTG 1107
Query 1236 GAGAGAAAGATCGGAACACAGCTAGAGAGAGCCACACTCGATGACCTGCTCGTCCCTAGC 1295
||||||||||||||| | ||||||||||||||||| ||||| || ||||||||||||||
Sbjct 1106 GAGAGAAAGATCGGATCGCAGCTAGAGAGAGCCACGCTCGACGATTTGCTCGTCCCTAGC 1047
Query 1296 TACTCATACCTCAACGAGACTTTGTACGATGTTGATTTGGTAGAGAGAATCTTAGGTCAC 1355
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1046 TACTCATACCTCAACGAGACTTTATACGATGTTGATTTGGTAGAGAGAATCTTAGGCCAC 987
Query 1356 TTTCTCGACACCTTGGAACAGTCAAACACCGCCGTAATCGAAGCTGACGGAAAATCTCCG 1415
|||||||||||||||||||| || ||||||||| || |||||| ||||||||||||||||
Sbjct 986 TTTCTCGACACCTTGGAACAATCCAACACCGCCATAGTCGAAGTTGACGGAAAATCTCCG 927
Query 1416 TCGCTTATGCTCGTCGGGAAATTAATCGACGGATTTCTCGCTGAGATCGCATCCGACGCT 1475
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 926 TCGCTGATGCTCGTCGGGAAATTAATCGACGGATTTCTCGCGGAGATCGCATCGGACGCT 867
Query 1476 AATCTCAAATCGGATAAATTTTTCAATCTAGCCATCTCACTCCCAGATCAAGCTCGTCTC 1535
||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct 866 AATCTCAAATCGGATAAGTTCTACAATCTAGCCATCTCACTCCCAGATCAAGCTCGTCTC 807
Query 1536 TACGATGACGGACTTTACAGAGCCGTCGACGTATATCTCAAGG 1578
|| ||||||||||||||||||||||||||||||||||||||||
Sbjct 806 TATGATGACGGACTTTACAGAGCCGTCGACGTATATCTCAAGG 764
Score = 501 bits (271), Expect = 1e-140
Identities = 295/307 (96%), Gaps = 0/307 (0%)
Strand=Plus/Minus
Query 1765 GAGAAGGACAGGTGGACGCTGGGAAATGGAAGAAGACGGTGAGAGAGAATCAGGTGCTTC 1824
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 399 GAGAAAGACAGGTGGACGCTGGGAAATGGAAGAAGACGGTTAGAGAGAATCAGGTGCTTC 340
Query 1825 GCTTGGATATGGATACGATGAGGACGCGTGTTCACCGGTTAGAGAGAGAGTGCTCCAATA 1884
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 339 GCTTGGATATGGATACGATGAGGACGCGTGTTCATCGGTTAGAGAGAGAGTGCTCGAACA 280
Query 1885 TGAAGAAAGTGATCGCGAAGATTGATAAAGATGGTTCATCACCGGCGACGACGACTGATC 1944
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 279 TGAAGAAAGTGATCGCGAAGATTGATAAGGAAGGTTCATCACCGGCGACGACGACTGATC 220
Query 1945 GGCCGAGAAGTTGGTCGATTACCAAAAAGTTGGGATGTAAATTCAAGACACAGGTCTGCG 2004
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 219 GGCCGAGAAGTTGGTCGATTACCAAAAAATTCGGATGTAAATTCAAGACACAGGTCTGCG 160
Query 2005 ATTCGCACGAGGCTACGATGGTTGATCATAGATCACGACGGTCTTGAATTGTTTTCGATT 2064
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 ATTCACACGAAGCAACGATGGTTGATCATAGATCACGACGGTCTTGAATTGTTTTCGATT 100
Query 2065 GATTTTA 2071
|||||||
Sbjct 99 GATTTTA 93
Score = 237 bits (128), Expect = 3e-61
Identities = 138/143 (97%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 1592 TGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAGCCGTCG 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 TGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAGCCGTCG 559
Query 1652 TACAAGTTCTCTTCTTCGAGCAGTTACAGCTCCGGCATGCGATCGCCGGGACGTTATTAG 1711
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 558 TACAAGTTCTCTTCTTCGAGCAGTTACAACTCCGGCACGCGATCGCCGGGACGTTATTAG 499
Query 1712 CAGCTCAATCTCCGTCTCCGTCA 1734
| |||||||| |||||| |||||
Sbjct 498 CTGCTCAATCGCCGTCTACGTCA 476
Score = 163 bits (88), Expect = 6e-39
Identities = 106/114 (93%), Gaps = 3/114 (3%)
Strand=Plus/Minus
Query 265 AGTTTCCACTCATGTCAAAGAGCAGGAAACTTCACAGGTTGATTACAGAGCAAGAGACTA 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2003 AGTTTCCACTCATGTCAAAGAGCAGGAAACTTCACAGGTTGATTACAGAGCAAGAGACTA 1944
Query 325 GATCTTG-T-T-CCATGGCGCTAATAACTGAAACGGACCCAAAAGTAGAAGAGA 375
|||||| | | |||||||||| ||||||| || |||||||||||||||||||
Sbjct 1943 GATCTTCCTCTTCCATGGCGCTGATAACTGTAATAGACCCAAAAGTAGAAGAGA 1890
Score = 161 bits (87), Expect = 2e-38
Identities = 161/194 (83%), Gaps = 16/194 (8%)
Strand=Plus/Minus
Query 18 TCTGTTTCTCATGATCTAGGATTCCAATTCCTTCCCCTTCCCCTTCTTGTTCTCTCCATA 77
||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2466 TCTCTTTCTTATGATTTAGGATTCCAATTCCTTCCCTTTCCCCTTCTTGTTCTCTCCATA 2407
Query 78 -T-T-ATCATTAGAAAGAGAT--AG-G-CTATTGttttttt-ctgtctttttttCAGAGC 129
| | || |||||||||||| || | | |||||||||| ||||| || | ||
Sbjct 2406 TTCTCCTCTTTAGAAAGAGATAGAGAGAGTCTTGTTTTTTTCCTGTC-TTGAGT--GATA 2350
Query 130 CTTTCTTC--A---CAGAGTTGTTGTCTCCATTAATGGCGTCAGAGAAATCTAGCTCCAA 184
||| ||| | | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2349 TTTTTTTCAGAGCCCTGAGTTGTTGTCTCCATTAATGGCGTCAGAGAAATCTACCTCCAA 2290
Query 185 GGGCCAAGCATGGT 198
||||||||||||||
Sbjct 2289 GGGCCAAGCATGGT 2276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102660114525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5