BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496951
Length=1873
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66540.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2543 0.0
> AT5G66540.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus,
nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3
small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173),
Mpp10 protein (InterPro:IPR007151); Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr5:26556333-26559427 REVERSE LENGTH=1934
Length=1934
Score = 2543 bits (1377), Expect = 0.0
Identities = 1683/1826 (92%), Gaps = 40/1826 (2%)
Strand=Plus/Plus
Query 75 TCAATCCATGGCGACGGTTAAGGATTCGGGCATTGAAGCCCTTGAGAAGCTTAAGTCAAC 134
|||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 111 TCAATCAATGGCTACGGTAAAGGATTCGGGGTTTGAAGCCCTTGAGAAGCTTAAGGCAAC 170
Query 135 AGAACCACCAGTTTTCCTAGCGCCAAGTTCAATATCTGAGGTTGCTCGCGCTGTATCTCA 194
||| ||||||||||| ||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 171 AGAGCCACCAGTTTTTCTAGCGCCAAGTTCAATATCTGAGGATGCTCGCTCTGCATCTCA 230
Query 195 GTATCTGTTCACGAAGTTGAAGCCGCATGACCCTAAATCTCAACTTGATCAGCTCTGGGT 254
|||||| |||| |||||||||||||||| ||||||||| || | |||||||||||| |
Sbjct 231 GTATCTATTCATGAAGTTGAAGCCGCATAACCCTAAATGTCCATTTGATCAGCTCT--CT 288
Query 255 T-T-ATGGTTTTGATACGGAGCAGATTTGGCAGCAAATTGATATGCAGTCTCAACATTTG 312
| | |||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 289 TCTGATGGGTTTGATGCGGAGCAGATTTGGCAGCAAATTGATATGCAATCTCAACCTTTG 348
Query 313 TTGCCAAGCTTGCGGCAGGAAGTTAACAGATTTGTTAAAAACCCTGAAGAGATTCGTAAA 372
||| | ||||||||||||||||| || ||||||| |||||||||||||||||||||||||
Sbjct 349 TTGACTAGCTTGCGGCAGGAAGTCAAGAGATTTGCTAAAAACCCTGAAGAGATTCGTAAA 408
Query 373 C-TGGCGAATTTGTCCCTTAAGGTTTCTCATGAAGATGATGTTGATGAGATGGATATGGA 431
| ||| ||| ||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 409 CTTGG-GAAGTTGGCCCTTAAGGTTTCTCATGAAGATGATATTGATGAGATGGATATGGA 467
Query 432 TGGTTCTGACTCGGATGA----G--GAT-A--At---gagctagaagctagtgaaagcca 479
||||| |||||||||||| | ||| | || ||| ||||| ||| ||| ||| |
Sbjct 468 TGGTTTTGACTCGGATGATGTTGATGATGAGGATAAAGAGATAGAATCTAATGACAGCGA 527
Query 480 aggagaagaggaagaggatgatgaagaagaggaggaagaagaagaagatgaagaagagga 539
||||||||| |||||||| || ||||| || |||||||||||||| || ||||| |||||
Sbjct 528 AGGAGAAGATGAAGAGGAAGAGGAAGAGGACGAGGAAGAAGAAGAGGAGGAAGAGGAGGA 587
Query 540 ggaagaagaagaagatgacgatggagacaatgaaggaatagaggacaagTTCTTCAAGAT 599
|| || || || ||| | |||||||||||||||||||||||||| ||||||||||||||
Sbjct 588 GG-AGGAGGAGGAGA--AGGATGGAGACAATGAAGGAATAGAGGATAAGTTCTTCAAGAT 644
Query 600 TAAAGAATTGGAAGAATTTTTAGAGGAAGGTGAAGCACAAGAGTATGGGAAT-GACTACa 658
||||||||||| |||||||||||||||||||||||| ||||||||||| || ||| |||
Sbjct 645 AAAAGAATTGGAGGAATTTTTAGAGGAAGGTGAAGCAGAAGAGTATGGG-ATAGACCACA 703
Query 659 aaaacaaaaaaGGAGTGGCAAAGAGAAATAAGCAAAATTTTAGCgatgatgaagacgaag 718
|||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||
Sbjct 704 AAAACAAAAAAGGAGTGGCACAGAGAAAGAAGCAAAATTTGAGCGATGATGAAGACGAAG 763
Query 719 aagatgatgaggatgaagacgaagatgatgagtttgatgCTTTTGCTGGTGGTGACGACG 778
|||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 764 AAGATGATGATGATGAAGAAGAAGATGTTGAGTTTGATGCTTTTGCTGGTGGTGACGACG 823
Query 779 AAGAGGCAGATAAATTGGGAAGGGCAAGGTATGATGATTTCTTTGGTGGCAAAAAGAAGG 838
||||| |||||||||| |||| ||||||||||||||||||||||||||| ||| ||||
Sbjct 824 AAGAGACAGATAAATTAGGAAAAGCAAGGTATGATGATTTCTTTGGTGGC--AAA-AAGG 880
Query 839 AGACAAAAATGAAGTTGAAAGATTTGAGTGAAGATGAGGAAGCTGAAAGAGAAAATC-AA 897
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct 881 AGACAAAAATGAAGTTGAAAGATTTGAGTGAAGATGAGGAAGCTGAAATAGAAAA-CAAA 939
Query 898 GGCAATGAAAAACTCTCTACCCATGAGAGAGCACGACTAAAGCTTCAATCCAAGATTGAA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 GGCAATGAAAAACTCTCTACCCATGAGAGAGCACGACTAAAGCTTCAATCCAAGATTGAA 999
Query 958 CAGATGGAGAAAGCTAACTTAGACCCAAAACATTGGACAATGCAGGGAGAGATAACTGCT 1017
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1000 CAGATGGAGAAAGCAAACTTGGACCCAAAACATTGGACAATGCAGGGAGAGATAACTGCG 1059
Query 1018 GCAAAGAGGCCAATGAACAGTGCTCTAGAAGTTGATTTAGATTTTGAGCACAATGCCAGG 1077
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 GCAAAGAGGCCAATGAATAGTGCTCTAGAAGTTGATTTAGATTTTGAGCACAATGCCAGG 1119
Query 1078 CCTGCTCCTGTAATCACAGAAGAGGTCACAGCCTCACTTGAAGATTTGATCAAGAGCAGA 1137
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1120 CCTGCTCCTGTAATCACAGAAGAAGTCACAGCCTCACTTGAAGATTTGATCAAGAGCAGA 1179
Query 1138 ATCATTGAGGCTCGTTTCGATGATGTTCAGCGAGCACCTAGTCTACCCACTAAAGGAAAA 1197
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1180 ATCATTGAGGCTCGTTTCGATGATGTTCAACGAGCACCTCGTCTACCCACTAAAGGAAAA 1239
Query 1198 AGAGAAGCCAAGGAATTGGACGATAGCAAAAGCAAGAAAGGTCTTGCCGAAGTTTACGAG 1257
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1240 AGAGAAGCCAAGGAATTGGACGAAAGCAAAAGCAAGAAAGGTCTTGCCGAAGTTTACGAG 1299
Query 1258 GCAGAATACGTTCAGAAGGCTAATCCAGCTTTTGCCCCAATAACTTTGTCTGATGAACTA 1317
||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1300 GCAGAATACTTTCAGAAGGCTAATCCAGCTTTTGCCCCAACAACTCACTCTGATGAACTA 1359
Query 1318 AAGAAAGAGGCAAGCATGTTGTTCAAGAAACTATGCCTGAAGTTGGATGCTCTCTCCCAC 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 AAGAAAGAGGCAAGCATGTTGTTCAAGAAACTATGCCTGAAGTTGGATGCTCTCTCCCAC 1419
Query 1378 TTCCACTTCACACCTAAACCAGTGATTGAAGAGATGTCTATACAAAACGTTCCAGCCATA 1437
|||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||
Sbjct 1420 TTCCACTTCACACCTAAACCAGTGATTGAAGAAATGTCTATACCAAACGTTTCAGCCATA 1479
Query 1438 GCAATGGAAGAGGTTGCGCCCGTGGCAGTCTCAGATGCAGCAATGCTTGCCCCAGAGGAA 1497
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1480 GCAATGGAAGAGGTTGCGCCCGTGGCCGTCTCAGATGCAGCAATGCTTGCCCCAGAGGAA 1539
Query 1498 ATATTTTCCGGGAAAGGTGACATTAAGGATGAGTCTGAGCTCACACAGgaagaaagaaag 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1540 ATATTTTCCGGGAAAGGTGACATTAAGGATGAGTCTGAGCTCACACAGGAAGATAGAAAG 1599
Query 1558 agaaggagagctaagaagaagagaaagTTTAAGGCTGAATCTGCAAATGAACCGGCC-AA 1616
|| |||||||| || ||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1600 AGGAGGAGAGCGAATAAGAAGAGAAAGTTTAAGGCTGAATCTGCAAATGAACCG-CCTAA 1658
Query 1617 AAAGGCGCGGGATACAAGTACCGAGAACCCTTGAACTGTTACATGATGAAGAAAGGAGAG 1676
|||||||| ||||||||||||| ||||||||| |||||||||||| ||||||||||||||
Sbjct 1659 AAAGGCGCTGGATACAAGTACCAAGAACCCTTAAACTGTTACATGTTGAAGAAAGGAGAG 1718
Query 1677 AGTTACAGAGCCAAATTGAAGATGATAAGATCTCAGTCAAGAGCATTGCTACACAT---G 1733
|||||||||| |||||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 1719 AGTTACAGAGGCAAATTCAAGATGATAAGATCTCGGTCAAGAGCATTGCTACACAGACAG 1778
Query 1734 CTTGAAGATTAGATCAAACCACAGTTTTGGATTAGAGAAATATTTAAACTTTGTCTTTGA 1793
|||||||||||||| |||| ||||||||| || ||||||||||||||||||||||||| |
Sbjct 1779 CTTGAAGATTAGATAAAACAACAGTTTTGAATGAGAGAAATATTTAAACTTTGTCTTTCA 1838
Query 1794 CAAATTTGAATTTTATTGTATA-----CT-TTTGATATGAGAAGTTCCATTTTCCTTGTA 1847
||||||||||||||||||||| || |||| |||||| ||||||||||||||||||
Sbjct 1839 CAAATTTGAATTTTATTGTATTTTTTTCTCTTTG-TATGAGTAGTTCCATTTTCCTTGTA 1897
Query 1848 TGGATAGAGAAATTCCCAAGAAATCT 1873
| |||||| ||||||| |||||||||
Sbjct 1898 TCGATAGAAAAATTCCAAAGAAATCT 1923
Score = 89.8 bits (48), Expect = 9e-17
Identities = 70/79 (89%), Gaps = 7/79 (9%)
Strand=Plus/Plus
Query 1 CCTCTTCTAAAACCTAACCGCCGTTTAAACCCACCTTCGTCGTCACCGCCACTGATA-AG 59
||||||||||||||||||||||||||||||| ||||||| | |||||||| ||||| |
Sbjct 1 CCTCTTCTAAAACCTAACCGCCGTTTAAACC-ACCTTCG--G-CACCGCCATTGATATA- 55
Query 60 CTCTTCTGTTTTCGTTCAA 78
|||| |||||||||| |||
Sbjct 56 CTCTACTGTTTTCGT-CAA 73
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92720406615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5