BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496955
Length=1133
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66510.2 | Symbols: GAMMA CA3 | gamma carbonic anhydrase 3 |... 1781 0.0
> AT5G66510.2 | Symbols: GAMMA CA3 | gamma carbonic anhydrase 3
| chr5:26549704-26551604 REVERSE LENGTH=1230
Length=1230
Score = 1781 bits (964), Expect = 0.0
Identities = 1061/1108 (96%), Gaps = 6/1108 (1%)
Strand=Plus/Plus
Query 1 CAAAGACTGCACTCTCTCCTCTTCCTCTGGCTCCGGCGAAAAACCCCTTTTCGATTTCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAAGACTGCACTCTCTCCTCTTCCTCTGGCTCCGGCGAAAAACCCCTTTTCGATTTCAT 60
Query 61 TGACAAAACGTAAATCGATCCCTCGTG-GG--GAAGAAGACGAAGACGATGGGAACAATG 117
||| |||||| ||||||||| |||||| || |||||||| ||| |||||||||||||||
Sbjct 61 TGATAAAACGCAAATCGATCTCTCGTGTGGAAGAAGAAGAAGAACACGATGGGAACAATG 120
Query 118 GGTAAAGCATTCTACAACGTAGGATTCTGGATCCGGGAAACTGGTCAAGCACTTGATCGG 177
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GGTAAAGCATTCTACAGCGTAGGATTCTGGATCCGTGAAACTGGTCAAGCACTTGATCGG 180
Query 178 CTCGGTTGTCGCCTCCAAGGCAAAAATCACTTCCGAGAACAGCTATCAAGGCACCGCACG 237
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 181 CTCGGTTGTCGCCTCCAAGGGAAAAATCATTTCCGAGAACAGCTATCAAGGCACCGCACA 240
Query 238 CTCATGAATGTTTTTGACAAAGCCCCTAGTGTGGATAAGGGGGCTTTTGTTGCTCCTAAC 297
||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||
Sbjct 241 CTCATGAATGTTTTTGACAAAACCCCTAATGTGGATAAGGGGGCTTTTGTGGCTCCTAAC 300
Query 298 GCTTCTATCACTGGTGATGTCCATGTGGGACGAGGTTCTTCCATTTGGTATGGATGTGTC 357
|||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 GCTTCTCTCTCTGGTGATGTCCATGTGGGAAGAGGTTCTTCCATTTGGTATGGATGTGTC 360
Query 358 TTGAGAGACATTCCCATTGATTTAACAATTTACTCTGCAGGAGATGCTAACAGCATTACT 417
||||||||||| ||| ||||||||| | ||||||||||||||||||||||||||| |
Sbjct 361 TTGAGAGACATACCCTTTGATTTAATGACCGACTCTGCAGGAGATGCTAACAGCATTAGT 420
Query 418 GTTGGAGCTGGGACCAATATTCAGGACAACGCTCTTGTCCACGTTGCCAAGACCAACTTA 477
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 GTTGGAGCTGGGACCAATATTCAGGACAACGCTCTTGTCCACGTTGCTAAGACCAACTTA 480
Query 478 AGCGGGAAGGTCTTACCTACTGTCATTGGAGACAATGTCACTATTGGTCATAGTGCTGTT 537
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 AGTGGGAAGGTCTTACCTACTGTCATTGGAGACAATGTCACCATTGGTCATAGTGCTGTT 540
Query 538 TTACATGGCTGCACTGTCGAGGATGAGGCCTATATTGGTACAAGTGCAACTGTGTTGGAT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 TTACATGGCTGCACTGTCGAGGATGAGGCCTATATTGGTACAAGTGCAACTGTCTTGGAT 600
Query 598 GGGGCTCATGTTGAAAAACATGCCATGGTTGCTTCAGGAGCTCTTGTTAGGCAGAACACT 657
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGAGCTCATGTTGAAAAACATGCCATGGTTGCTTCAGGAGCTCTTGTTAGGCAGAACACT 660
Query 658 AGAATTCCCTCTGGCGAGGTTTGGGGAGGCAACCCAGCTAAATTTCTGAGGAAGGTGACA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGAATTCCCTCTGGCGAGGTTTGGGGAGGCAACCCAGCTAAATTTCTGAGGAAGGTGACA 720
Query 718 GAAGAAGAAAGAGTCTTCTTCTCCAGTTCGGCTGTGGAGTACTCCAACTTAGCTCAAGTT 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 GAAGAAGAAAGAGTCTTCTTCTCCAGTTCGGCTGTGGAGTACTCCAACTTAGCTCAAGCT 780
Query 778 CACGCCACAGAGAACGCAAAGAACTTGGACGAGGCTGAGTTCAAGAAGCTTCTAAACAAG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CACGCCACAGAGAACGCAAAGAACTTGGACGAGGCTGAGTTCAAGAAGCTTCTAAACAAG 840
Query 838 AAGAACGCTCGCGATACAGAATATGATTCAGTACTCGATGATCTCACGCTCCCTGAGAAT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AAGAACGCTCGCGATACAGAATATGATTCAGTACTCGATGATCTCACGCTCCCTGAGAAT 900
Query 898 GTACCAAAAGCAGCTTGAGGCGTTTAACCTGTGCCGTCTTATGAATCTTGATTTGTTTGG 957
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 901 GTACCAAAAGCAGCTTGAGGCGTTTAACCTGTGCCGCCTTGCGAATCTTGATTTGTTTGG 960
Query 958 ATTTGAAAGaaaaaaaaaaaCAAGAACTTCATTTCCTGCTTCTCCAATAATGTTTTCTTG 1017
|||||||| | ||||| || | |||||| |||||||||||||||||||| |||||||||
Sbjct 961 ATTTGAAA-AGTAAAAACAA-A-GAACTTGATTTCCTGCTTCTCCAATAAAGTTTTCTTG 1017
Query 1018 GGCTTAAAATCCATTGGCCAGTGCTTACTGGGAAAGTTTTCGGCTTAAAGGCATTCATTT 1077
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1018 GGCGTAAAATCCATTGGCCAGTGCTCACTGGGAAAGTTTTCGGCTTAAAGGCATTCATTT 1077
Query 1078 CTCTGTTAAAGATTGTGAGGGGGTTTGT 1105
|||||||||||||||||||||| |||||
Sbjct 1078 CTCTGTTAAAGATTGTGAGGGGTTTTGT 1105
Score = 56.5 bits (30), Expect = 5e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1104 GTCTAATAAATTGTTGATCAGACAGACATT 1133
||||||||||||||||||||||||||||||
Sbjct 1158 GTCTAATAAATTGTTGATCAGACAGACATT 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55572003315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5