BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496956
Length=1682
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66500.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2617 0.0
> AT5G66500.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:26547995-26549677 REVERSE LENGTH=1683
Length=1683
Score = 2617 bits (1417), Expect = 0.0
Identities = 1596/1684 (95%), Gaps = 5/1684 (0%)
Strand=Plus/Plus
Query 1 ACATGTTCGCATGTTTGCCTATTGGAGGCTTTATTCGTCTGGGTGACGTCATCGGGAAAT 60
|||||||||||||||||| ||||||| ||||||||||||||||| |||| | || ||||
Sbjct 2 ACATGTTCGCATGTTTGCGTATTGGACGCTTTATTCGTCTGGGTAACGTTACCGTTAAAT 61
Query 61 CCACTAATTTGGTACTGAGATATGTGTTTATCCGTAATTTTGTTACCCATGCCGACCACC 120
||||||||||||||||||| | ||| |||||||| ||||||| ||||||||||||||||
Sbjct 62 CCACTAATTTGGTACTGAGGTGTGTCTTTATCCGAAATTTTGCCACCCATGCCGACCACC 121
Query 121 TGTTCGACGAATTGCCGCAACGAGACCTCTCCTCACTGAACTCTCAACTCTCGTCTTACC 180
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 122 TGTTCGACGAATTGCCGCAACGAGACCTCTCCTCACTTAACTCTCAACTCTCGTCTCACC 181
Query 181 TCCGGAGCGGAAACCCAAATGGCACATTGGCTCTTTTTCTTGAGATGCATCGGGCCAGCC 240
|||| || ||||||||||||| ||| |||||||| |||||| |||| ||| |||| ||||
Sbjct 182 TCCGCAGTGGAAACCCAAATGACACCTTGGCTCTCTTTCTTCAGATTCATAGGGCTAGCC 241
Query 241 CTGACCTCAGCTCGCACACCTTCACTCCGGTTCTAGGCGCGTGTGCCCTCTTGTCGTACC 300
|||| |||||||||||||| |||||||||||||| || || ||| |||||||||||||||
Sbjct 242 CTGATCTCAGCTCGCACACTTTCACTCCGGTTCTCGGGGCCTGTTCCCTCTTGTCGTACC 301
Query 301 CAGAAACAGGACGCCAAGTTCACGCCTTGATGATCAAACAAGGCGCTGAGACAGGAACCA 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 302 CAGAAACAGGACGCCAAGTTCACGCCTTGATGATCAAACAAGGCGCTGAAACAGGAACCA 361
Query 361 TATCCAAAACTGCACTTATTAACATGTACTCTAAGTACGGACACTTGGTTGATTCCGTTA 420
||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 362 TATCCAAAACTGCGCTTATTGACATGTACTCCAAGTACGGACACTTGGTTGATTCCGTTA 421
Query 421 GGGTGTTCGAGAGCGTTGAAGAAAAAGATGTCGTCTCATGGAATGCTCTGCTTTCGGGTT 480
|||| ||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 422 GGGTATTCGAAAGCGTTGAGGAAAAAGATCTCGTCTCATGGAATGCTCTGCTTTCGGGTT 481
Query 481 TCCTTAGAAATGGTAAAGGCAAAGAAGCTCTTGGCGTTTTCGCAGCTATGTGTAGAGAAA 540
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 482 TCCTTAGAAACGGTAAAGGCAAAGAAGCTCTTGGCGTTTTCGCAGCTATGTATAGAGAAA 541
Query 541 GAGTAGAAATCAGTGAGTTCACTTTGTCTTCTGTTGTTAAAACCTGTGCCTCTCTCAAGA 600
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 542 GAGTAGAAATCAGTGAGTTCACTTTGTCTTCTGTTGTTAAAACTTGTGCCTCTCTCAAGA 601
Query 601 TTTTGCAGCAAGGGAAGCAAGTTCATGCCATGGTGATGGTCACGGGACGCGATCTCGTGG 660
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 602 TTTTGCAGCAAGGGAAGCAAGTTCATGCCATGGTGGTGGTCACCGGACGCGATCTCGTGG 661
Query 661 TTTTAGGAACTGCAATGATTAGTTTTTACTCGAGTGTAGGGTTGATTAGTGAAGCCATGA 720
|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 662 TTTTAGGAACTGCAATGATTAGTTTTTACTCGAGTGTAGGTTTGATCAATGAAGCCATGA 721
Query 721 AGGTTTATATCAGTTTGAATGTTCATACAGACGAGGTGATGTTGAATTCTTTGATATCAG 780
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 722 AGGTTTATAACAGTTTGAATGTTCATACGGACGAGGTGATGTTGAATTCTTTGATATCAG 781
Query 781 GTTGCATTCGAAACCGAAATTACAAGGAAGCGTTTCTGCTTATGAGTAGGAAGAGACCCA 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 782 GTTGCATTCGAAACCGAAATTACAAGGAAGCGTTTCTGCTTATGAGTAGGCAGAGACCCA 841
Query 841 ATGTGAGAGTTCTCAGTAGCTGTCTTGCTGGCTGCTCTGATAACTCTGATATGTGGATTG 900
|||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 842 ATGTGAGAGTGCTCAGTAGCTCTCTTGCTGGCTGCTCTGATAACTCTGATCTGTGGATTG 901
Query 901 GTAAACAGATACACTGTGTCGCCTTACGTAATGGTTTCGTTTCAGATAT-TAAGTTATGC 959
|||||||||||||||||||||| |||||||||||||||||||||||| | |||| |||||
Sbjct 902 GTAAACAGATACACTGTGTCGCTTTACGTAATGGTTTCGTTTCAGAT-TCTAAGCTATGC 960
Query 960 AATGGCTTAATGGATATGTACGGCAAATGCGGTCAGATTGTGCAAGCGCGTACTCTTTTC 1019
|||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||
Sbjct 961 AATGGCTTAATGGATATGTATGGAAAATGCGGTCAGATTGTGCAAGCGCGTACTATTTTC 1020
Query 1020 AGAGCTATTTCATCTAAAAGTGTGGTTTCTTGGACGAGTATGATAGATGCGTATGCAGTT 1079
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1021 AGAGCTATTCCATCTAAAAGTGTGGTTTCTTGGACGAGTATGATAGATGCGTATGCGGTT 1080
Query 1080 AATGGGGATGGGGTTAAAGCTCTTGAAATCTTCAGGGAAATGTGTGAAGAAGGAAGCGGA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AATGGGGATGGGGTTAAAGCTCTTGAAATCTTCAGGGAAATGTGTGAAGAAGGAAGCGGA 1140
Query 1140 GTTTTACCCAATTCAGTGACATTTCTCGTTGTTTTATCGGCTTGTGCACATGCAGGACTA 1199
|||||||| ||||||||||||||||| |||||| |||||||||||||||| |||||||||
Sbjct 1141 GTTTTACCGAATTCAGTGACATTTCTTGTTGTTATATCGGCTTGTGCACACGCAGGACTA 1200
Query 1200 GTTGAAGAAGGTAAGGAATGTTTTGGTATGATGAAGGAGAAGTATCGGTTGGTTCCTGGA 1259
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GTTAAAGAAGGTAAGGAATGTTTTGGTATGATGAAGGAGAAGTATCGGTTGGTTCCTGGA 1260
Query 1260 ACAGAGCATTACGTATGCTTCATTGATATCTTAAGTAAGGCTGGTGATACAGAAGAGATA 1319
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 1261 ACAGAGCATTACGTATGCTTCATCGATATCTTAAGCAAGGCTGGTGAGACAGAAGAGATA 1320
Query 1320 TGGAGATTAGTTGAGAGAATGATGGAGAACAATAAACGAAA-CATTCCTTGTGCTATATG 1378
||||||||||| |||||||||||||||||| |||| | ||| ||||||||||||||||||
Sbjct 1321 TGGAGATTAGTCGAGAGAATGATGGAGAACGATAATC-AAAGCATTCCTTGTGCTATATG 1379
Query 1379 GGTAGCTGTACTTAGTGCTTGTAGTCTTAATATGGATGTTACGCGAGGCGAATATGTAGC 1438
|||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1380 GGTAGCGGTACTCAGTGCTTGTAGTCTTAATATGGATCTTACGCGAGGCGAATATGTAGC 1439
Query 1439 AAGGAAGCTTATGGAAGAGACGGGTCCAGAGAACGCGAGCATTTATGTGTTGGTTTCGAA 1498
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 AAGGAGGCTTATGGAAGAGACGGGTCCAGAGAACGCGAGCATTTATGTGTTGGTTTCGAA 1499
Query 1499 TTTCTATGCAGCTATTGGGAAGTGGGATGTGGTTGAAGAATTGAGAGGAAAATTGAAGAA 1558
|||||||||||| || |||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1500 TTTCTATGCAGCGATGGGGAAGTGGGATGTCGTTGAAGAATTGAGAGGAAAACTGAAGAA 1559
Query 1559 TAAAGGTTTGGTTAAAGCAGCAGGACACAGCTTATTAATATGAATTACTTTGTTTTTTCA 1618
|||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1560 TAAAGGTTTGGTTAAAACAGCAGGACACAGCTTATTCATATGAATTGCTTTGTTTTTTCA 1619
Query 1619 GCATTACACTACACTTAAGCTACTGTTTTTTGTGACAAGAAACAGAGCAAGTCCACTAAA 1678
|||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1620 GCATTACACTACACTTGAGCTACTGTTTTT-GTGTCAAGAAACAGAGCAAGTCCACTAAA 1678
Query 1679 GTCT 1682
||||
Sbjct 1679 GTCT 1682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83132102520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5