BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496957

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G66490.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   651    0.0  


> AT5G66490.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; 
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT3G50900.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:26547227-26547768 REVERSE LENGTH=542
Length=542

 Score =  651 bits (352),  Expect = 0.0
 Identities = 413/441 (94%), Gaps = 9/441 (2%)
 Strand=Plus/Plus

Query  1    AAAACCACAAGACAA-GATGATTAGAGCCCTGAGCACGAGGAAGGTTCGAGGAAGCTACA  59
            |||||||||||| ||  ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct  1    AAAACCACAAGA-AATAATGATTAGAGCGCTGAGCACGAGGAAGGTTCGAGGCAGCTACA  59

Query  60   AGAAGCTGGGTGACGAAGAAGAAGCAGGCGCAGGGCTTTTAGAAGTGAAACCGGAGAGCG  119
            ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   AGAAGCTCGGCGACGAAGAAGAAGCAGGCGCAGGGCTTTTAGAAGTGAAACCGGAGAGCG  119

Query  120  TTCCTACAAATATCCATGGTCAATCCCCGAAGGTGAATAAACTGGTGGAGAAAACGGGGG  179
            |||||||||||  ||||||||||||||||||||||||||||| ||||||||||||  |||
Sbjct  120  TTCCTACAAATCCCCATGGTCAATCCCCGAAGGTGAATAAACCGGTGGAGAAAACCAGGG  179

Query  180  GTTCGGTTCACCCTCTACTTAGTTTCTTCGATATGAGTCTAaagaggaagaagaagacaa  239
            |||||| |||||||||| ||||||||||||| ||||||||||||| |  |||||||   |
Sbjct  180  GTTCGGCTCACCCTCTATTTAGTTTCTTCGAAATGAGTCTAAAGA-G--GAAGAAG---A  233

Query  240  agaagaagaGCACGACGACTGCAAAACCAGAATTTGCTAGGTACTTGGAGTATGTCAAGG  299
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  234  AGAAGAAGAGCACGACGACTGCAAAACCAGAATTCGCTAGGTACTTGGAGTATGTCAAGG  293

Query  300  AAGGAGGCGTTTGGGATAACACTTCAAATGGACCTGCCATATATTACAGATAGATCGGAG  359
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  294  AAGGAGGTGTTTGGGATAACACTTCAAATGGACCTGCCATATATTACAGATAGATCGGAG  353

Query  360  AAAGAGATTTCACAGAGGTTGTTTATATTTATTTTCGGTTTGTTATATAACTT-CTATTT  418
            ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||||
Sbjct  354  AAAGAGATTTCACAGAGGTTGTTTATATTTATTTTCGATTTGTGATATACCTTTCTATTT  413

Query  419  GAATAAGAAAGATGAATACAT  439
            ||||||||| |||||||||||
Sbjct  414  GAATAAGAAGGATGAATACAT  434



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20861115835


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5