BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496959
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66470.1 | Symbols: | RNA binding;GTP binding | chr5:265416... 2604 0.0
> AT5G66470.1 | Symbols: | RNA binding;GTP binding | chr5:26541695-26544359
REVERSE LENGTH=1632
Length=1632
Score = 2604 bits (1410), Expect = 0.0
Identities = 1547/1612 (96%), Gaps = 14/1612 (1%)
Strand=Plus/Plus
Query 1 AAAACCAACCAGTGAGAGCTATCAATTTGAAAAACCAAGTCCGACAATGGCGGTCTCTCC 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 12 AAAACCAACCAGTGAGAGCTATCAATTTGAAAAACCAAGTCCAACAATGGCGGTCTCTCC 71
Query 61 GCATATTTCGCCTACTCTTTCCCGCTACAAATTCTTCTCTACTTCCGTTGTTGAAAACCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GCATATTTCGCCTACTCTTTCCCGCTACAAATTCTTCTCTACTTCCGTTGTTGAAAACCC 131
Query 121 TAATTTCTCTCCGTATCGTATCTATAGTCGGCGGAGAGTTACCAAATCGCATCTCCAGGC 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 132 TAATTTCTCTCCGTATCGTATCTATAGTCGGCGGAGAGTTACCAAATCACATCTCCAGGC 191
Query 181 GCACAACACTACCACTAGCTATGGCCGGACGGAACTCTCCTCCTCGAAGAAGCTATGGAT 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 GCACAACAGTACCACTAGCTATGGCCGGACGGAACTCTCCTCCTCGAAGAAGCTATGGAT 251
Query 241 TAGGCAACGAAG-TTCCAGCGAAATGGAGGTTGAGCAAGCACAATTAGAGGAAGATGAAG 299
|||||||||||| || ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 252 TAGGCAACGAAGCTT-CAGCGAAATGGAGGTTGAGCAAGCACAATTAGAAGATGATGAAG 310
Query 300 AACAAGAGGAGATCGATATCGTTGACGAGGCCAGTCTCCTTTCCCTGAGCATGAAACCGG 359
|||||| ||||||||||||||| ||||| |||||||| || |||||||||||||||||||
Sbjct 311 AACAAGTGGAGATCGATATCGTCGACGAAGCCAGTCTTCTCTCCCTGAGCATGAAACCGG 370
Query 360 ACAGAAACATGGCGTTGCTCGACGATTATGAGATGGAGGAGCTTGGACACACGCCTGATA 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 371 ACAGAAACATGGCGTTGCTCGACGATTATGAGATGGAGGAGCTTGGACACACGCCTAATA 430
Query 420 CTCATCATCGCAGCGGATACGTGGCGGTGGTGGGGATGCCCAACGTTGGGAAAAGCACGC 479
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 431 CTCATCATCGGAGCGGATATGTGGCGGTGGTGGGGATGCCCAACGTCGGGAAAAGCACGC 490
Query 480 TCTCGAACCAAATGATTGGTCAGAAAATATCGATTGTTACAGATAAACCTCAAACGACGA 539
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 TTTCGAATCAAATGATTGGTCAGAAAATATCGATTGTTACAGATAAACCTCAAACGACGA 550
Query 540 GGCATCGGATTCTTGGTATATGTTCTAGCCCTGAATATCAGATGATACTTTATGACACGC 599
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 551 GGCATCGGATTCTTGGTATTTGTTCTAGCCCTGAATATCAGATGATACTTTATGATACGC 610
Query 600 CTGGTGTAATCGAGAAGAAGATGCACAGGTTAGATACAATGATGATGAAGAATGTCAGAG 659
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 CTGGTGTAATTGAGAAGAAGATGCACAGGTTAGATACAATGATGATGAAGAATGTCAGAG 670
Query 660 ATGCTGCCATCAATGCGGATTGCGTAGTTATTCTTGTTGATGCTTGTAAAACGCCTACTA 719
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 671 ATGCTGCCATCAATGCGGACTGCGTAGTAATTCTTGTTGATGCTTGTAAAACGCCTACTA 730
Query 720 ATATAGAAGAAGTTTTGAAAGAGGGTTTGGGAGACCTCGaaaaaaaGCCACCCATGTTGC 779
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 731 ATATAGAAGAAGTTTTGAAAGAGGGTTTGGGAGACCTTGAGAAAAAGCCACCCATGTTGC 790
Query 780 TTGTTATGAATAAGAAAGATCTGATCAAACCTGGTGAGATTGCCAAGAAACTGGAGTGGT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TTGTTATGAATAAGAAAGATCTGATCAAACCTGGTGAGATTGCCAAGAAACTGGAGTGGT 850
Query 840 ATGAAAAATTCACAGATGTTGATGAAGTTATACCTGTAAGTGCAAAGTATGGACATGGAA 899
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 ATGAAAAATTTACGGATGTTGATGAAGTTATACCTGTAAGTGCAAAGTATGGACATGGAA 910
Query 900 TAGAGGATGTCAAAGAGTGGATATTATCTAAACTTCCCTTCGGGCCACCATATTATCCAA 959
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 911 TAGAGGATGTCAAAGAGTGGATATTATCCAAACTTCCCTTCGGGCCACCTTATTATCCAA 970
Query 960 AGGATATTGTGAGCGAGCACCCAGAGAGATTCTTTGTTTCTGAGATTGTCAGAGAGAAGA 1019
||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |
Sbjct 971 AGGATATTGTGAGCGAGCATCCAGAGAGATTTTTTGTTTCTGAGATTGTTAGAGAGAAAA 1030
Query 1020 TATTTATGCAGTACCGAAATGAAGTTCCATATGCATGTCAGGTGAACGTGCTGAGCTATA 1079
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1031 TATTTATGCAGTACCGAAATGAAGTTCCTTATGCATGTCAGGTGAACGTGCTGAGCTACA 1090
Query 1080 AAACTAGACCAGCTGCAAAAGATTTTATTCAAGTGGAAGTAGTAGTGGATAAAAATTCTC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 AAACTAGACCAGCTGCAAAAGATTTTATTCAAGTGGAAGTAGTAGTGGATAAAAATTCTC 1150
Query 1140 AGAAGATCATCCTTATAGGAAAGGAAGGAAAGGCTCTGAAAACACTAGCGACGGCTGCTC 1199
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1151 AGAAGATCATCCTTATAGGAAAAGAAGGAAAGGCTCTGAAAACACTAGCAACGGCTGCTC 1210
Query 1200 GGCTCGACATTGAAGATTTCCTTCAGAAGAAAGTCTTCCTCGAGGTGGAAGTGAAAGTGA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 GGCTCGACATTGAAGATTTCCTTCAGAAGAAAGTCTTCCTCGAGGTGGAAGTGAAAGTGA 1270
Query 1260 AAGAGAACTGGAGACAAGACGAGGGGCTTCTCAAGTACTACGGCTATGGAGGACAGATCC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 AAGAGAACTGGAGACAAGACGAGGGGCTTCTCAAGTACTACGGCTATGGAGGACAGATCC 1330
Query 1320 GAGCTATGTAGTATGTGGGCTTCAAATGGGCCTAGAAGAAGATGAGAAAGTGCAAATGAC 1379
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1331 GAGCTATGTAGTATGTGGGCTTCAAATGGGCCTTGAAGAAGATGAGAAAGTGCAAATGAC 1390
Query 1380 TCGGC---TCAGGTTAGCATTTTCACCCTTATTTTTTGTTTGTATCTAACCGATGCCACT 1436
||||| |||||||||| ||||| || || |||||| ||||||| || |||||||||||
Sbjct 1391 TCGGCGGCTCAGGTTAGCTTTTTC-CC-TTCTTTTTT-TTTGTATTTAGCCGATGCCACT 1447
Query 1437 CACG-CTAGCTTTTGTTGTTTA-TGCTCAATCCGACGATTCCTTTGAAAATTTGAACTCT 1494
|| | |||||||||||| |||| | ||||||| | |||||||||| |||||||||||||
Sbjct 1448 CA-GTCTAGCTTTTGTT-TTTAAT-CTCAATCAGTTGATTCCTTTGGAAATTTGAACTCT 1504
Query 1495 TTCTTCTTTTGTTTTGTACTTTAGAGATTGTTCAACTAACCCCACTGAATATATCGTTC- 1553
||||||||||||||||| ||| |||| ||||||||| ||||||||||||||| || |||
Sbjct 1505 TTCTTCTTTTGTTTTGTCCTTAAGAGTTTGTTCAACCAACCCCACTGAATATCTCATTCC 1564
Query 1554 ATGATCACAGGTAGTAAACTTATAATTAAACAATTGCATTTAAATTTGCTTT 1605
|||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1565 ATGATCACAGGTAGTAGACTTATAATTAAACAATTGCATTTAAATTTGCTTT 1616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5