BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496962
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66440.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1074 0.0
> AT5G66440.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G34560.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:26530235-26531097 REVERSE LENGTH=863
Length=863
Score = 1074 bits (581), Expect = 0.0
Identities = 751/828 (91%), Gaps = 31/828 (4%)
Strand=Plus/Plus
Query 3 tctctctctctcGGTGTTCTTTCACTCGCAAATCGCAATGGATTCGTTTGATATCGATAA 62
||||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 31 TCTCTTTCTCTC--TGTTCTTGCACTCGCAAATCGCAATGGATTCGTTTGATTTCGATAA 88
Query 63 CGTGAAAGCAGAGAAAGTCAAGGCGTTGCGGCGTTTCAACCGTTTCCGGCGGATCGGCCG 122
||||||||||||||||| |||||||||||||||||||||||| ||| | | || |||||
Sbjct 89 CGTGAAAGCAGAGAAAGCCAAGGCGTTGCGGCGTTTCAACCGCTTCTGTAGAATTGGCCG 148
Query 123 TTTCTTCCGAGCGGCGGAGGTTTGCGTCGCGCTCCTCTTCATCTTTTGGACATTAAC-AA 181
||||||||| |||||||||||||||||||| || |||||||||||||||||||| | |
Sbjct 149 TTTCTTCCGTGCGGCGGAGGTTTGCGTCGCTCTACTCTTCATCTTTTGGACATTTTCGCA 208
Query 182 GACTTCCTTTGGTCGTTCAAATCTCCGGAGTTTTTCTCCGCCGTATCGCCGCCGTCATCT 241
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 209 -ACTTCCTTTCGTCGTTCAAATCTCCGGAGCGTTTCTCCGCCGTATCGCCGCCGTCATAT 267
Query 242 CGACTCCTCTGTTCGTCTTCCTCCTCGGGAACTCCATCGTCGTTGTTCTTCTCACCAAGT 301
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 CTACTCCTCTGTTCGTTTTCCTCCTCGGGAACTCCATCGTCGTTGTTCTTCTCACCAAGT 327
Query 302 CTTCCGATCGGACAACAACCACCGCCGCCGCAAGCGCAGAAACAGAAATCTACCAGGCGT 361
||||||||| |||||| | ||||||| ||||||||||||||| ||||||||||||||||
Sbjct 328 CTTCCGATCAGACAAC--C-ACCGCCGTCGCAAGCGCAGAAACCGAAATCTACCAGGCGT 384
Query 362 TCGTCAGATCTGTAGAGAATCGATCCAAGCCGTCCGATGAAGATTTGACGGAGGAGATTG 421
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||
Sbjct 385 TCGTCAGATCTGTAGAGAATCGTTCCAAACCGTCCGATGAAGATTTGACGGAGGGGATTG 444
Query 422 TCTACGACGACAAACAGGTGATCGTCACTGATTTGAATTCAAATCCGAATCTAATGGTGG 481
||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||
Sbjct 445 TCTACGACGACAAACAGGTGATCGTTACTGATTTGGATTCAAATCCGAATCTAACGGTGG 504
Query 482 ATGAGAATATTCCTGACGTCGAGATTGATTCTGATTCGAGTCCCGATCATCCAAGTAAGG 541
|||||||||| ||| ||||||||||||| || |||||||||||| ||| | ||||||
Sbjct 505 ATGAGAATATGCCTCACGTCGAGATTGACTCAGATTCGAGTCCC---CAT--A-GTAAGG 558
Query 542 TCGTCTATGGAAGAAGCAAATCAGACGTTTCTGGAAAACAGAGTCCAGAAGCAAAGGtga 601
|| | |||||||||||||||||||||| ||||||||||||||| || || || ||
Sbjct 559 TC-T--ATGGAAGAAGCAAATCAGACGTGTCTGGAAAACAGAGTTCA-AA-CA----TG- 608
Query 602 tgatgatgatgatgatgaAACGTTCTCTTCAGAGATCGGAGACAGAGAAGTGCTGCAGAG 661
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 609 -G-TGATGATGATGATGAAACGTTCTCTTCAGAGATCGGAGACAGAGAAGTTCTGCAAAG 666
Query 662 AAACTGAGAACGATGAC--CT-TGAGGAGGAGGAGAAGAACTATCCAGAGGATAATCTGA 718
|||||||||||||||| || |||||||||| | | |||||||||||||||| ||||||
Sbjct 667 AAACTGAGAACGATGATGACTCTGAGGAGGAG-A-A-GAACTATCCAGAGGATGATCTGA 723
Query 719 GCAACGAAGAGTTTCAGAAAACGATCGAAGCTTTCATAGCCAAACAGAGGATGTTTCGTC 778
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 724 GCAACGAAGAGTTTCAGAAAACGATAGAAGCTTTCATAGCAAAACAGAGGATGTTTCGTC 783
Query 779 GTCAAGAATCTTTAGCCGTCGTTGTCCATCACAAACCCTAAATATCTT 826
||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 784 GTCAAGAATCTTTAGCCGTCGTTGTCCATAACATAGCCTAAATATCTT 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40237551747
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5