BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496963
Length=2573
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66420.2 | Symbols: | LOCATED IN: cellular_component unknow... 3978 0.0
> AT5G66420.2 | Symbols: | LOCATED IN: cellular_component unknown;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised
conserved protein UCP033271 (InterPro:IPR008322), TIM-barrel
signal transduction protein, predicted (InterPro:IPR009215);
Has 1232 Blast hits to 1230 proteins in 311 species: Archae
- 18; Bacteria - 959; Metazoa - 1; Fungi - 84; Plants - 42;
Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).
| chr5:26521674-26525081 REVERSE LENGTH=2579
Length=2579
Score = 3978 bits (2154), Expect = 0.0
Identities = 2441/2578 (95%), Gaps = 26/2578 (1%)
Strand=Plus/Plus
Query 1 AAATCCAACAAACAACATCGCATAGAAATCAGACGGCAGTGTTGGATCGGAGGATTTTGA 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 AAATCCAACAAACAACACCGCATAGAAATCAGACGGCAGTGTTGGATCGGAGGATTTTGA 80
Query 61 TCTGTGGAGACAGAAGAAGATGCAAGGCGAAACTTATCGAGTCTTCTGTGTCGGAACCGT 120
||||||||||| ||| ||| |||| |||||||||||||| ||||||||||||||||
Sbjct 81 TCTGTGGAGAC----GAATATGAAAGGTGAAACTTATCGAGTGTTCTGTGTCGGAACCGC 136
Query 121 CGATACCAAGCTTGATGAGCTACGATTCCTTGCTGGATCAGTGCGATCAAATATTGGCGC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 137 CGATACCAAGCTTGATGAGCTACGATTCCTTGCTGGATCAGTGCGATCAAATATCGGCGC 196
Query 181 ATTCTCCAAAAACTCATCTTCCAAGGTCGAGGTTGTGATTGTGGATGTTTCGGCGGGTGC 240
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 197 ATTCTCCAAAAACTCGTCTTCCAAGGTTGAGGTTGTGATTGTGGATGTTTCGGCGGGTGC 256
Query 241 TGATCTGAATCAGATCGATATTGTTGCTGACTTTGCGTTTGTAACAAGAGAAGAAGTTCT 300
||||| ||| |||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 257 TGATCAGAAGCAGATCGATAATGTTGCAGACTTTGCGTTTGTAACAAGAGAAGAAGTTCT 316
Query 301 CTCCTTCTATTTTGGATCGAACCAGGA-GAAAAAGCCGGTGAAGCTTCCCGATGATAGAG 359
||| | ||| |||||||||||||||| |||||| ||||| || ||||| ||||||||||
Sbjct 317 CTCATGCTACATTGGATCGAACCAGGAGGAAAAA-CCGGTTAAACTTCCGGATGATAGAG 375
Query 360 GCGAGGCAGTTGCTATCATGAGCAAATGTCTTGAGATTTTTCTTAGGCAAGCGTTTGAGG 419
|||||||||||| | ||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 376 GCGAGGCAGTTGGTGTCATGAGCAAATGTCTTGAGAATTTTCTTAGGCAAGCCTTTGAGG 435
Query 420 ATAATTCTCTTGCTGGGGCTATAGGCCTTGGCGGAAGCGGAGGAACATCCCTTATAGCAT 479
||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct 436 ATAATTCTCTTGCTGGGGCTATAGGCCTTGGCGGAAGCGGAGGAACATCGCTCATATCAT 495
Query 480 CCGCTTTTAGGTCTCTCCCCATTGGGATTCCTAAGGTCATTGTATCCACTGTGGCCAGTG 539
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 496 CTGCTTTTAGGTCTCTCCCTATTGGGATTCCTAAGGTCATTGTATCCACTGTGGCCAGTG 555
Query 540 GTCTAACCGAACCTTATGTTGGGACCTCAGATTTGGTTTTGATTCCTTCTGTAGTAGATG 599
||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 556 GTCAAACTGAACCTTATGTTGGGACCTCAGATTTGGTTTTGATCCCTTCTTTAGTAGATG 615
Query 600 TTTGTGGTATCAACAGTGTTAGCAGGGTGGTCTTTTCAAATGCTGGGGCTTCTTTTGCGG 659
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 616 TTTGTGGTATCAACAGTGTTAGCAGGGTGGTCTTTTCAAACGCTGGGGCTTCTTTTGCTG 675
Query 660 GTATGGTAGTCGGGAGGCTTGAGGTGTGTAGAAGCTCCTCAAGCGATTACGGGAAATGTA 719
||||||||||||||||||||||| ||| |||||||||| |||||||| |||| |||||||
Sbjct 676 GTATGGTAGTCGGGAGGCTTGAGTTGTTTAGAAGCTCCCCAAGCGATAACGGCAAATGTA 735
Query 720 CTGTGGGCGTAACTATGTTTGGAGTGACAACTCCATGTGTAAATGCAGTCCAGGAGATAT 779
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 CTGTGGGCATAACTATGTTTGGAGTGACAACTCCATGTGTAAATGCAGTCCAGGAGATAT 795
Query 780 TAACAAGAGAAGGTTATGAGACACTAGTGTTTCATGCCACAGGTGTCGGTGGCAGAGCAA 839
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 796 TAACAAGAGAAGGTTATGAGACACTAGTGTTTCATGCCACTGGTGTTGGTGGCAGAGCAA 855
Query 840 TGGAATCTTTGGTTAAAGAAGG-TTTCATACAGGGAGTAATGGATATTACAACAACTGAA 898
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct 856 TGGAATCTTTGGTTAAAGAAGGATTT-ATACAGGGAGTAATGGATATTACAACAACCGAG 914
Query 899 GTTGCAGATCATGTCGTTGGAGGGGTGATGGCATGCGATAGTTCCCGTTTTGATATTACC 958
||||| || ||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 915 GTTGCCGACCATCTCGTTGGAGGGGTGATGGCATGCGATAGTTCCCGTTTTGATATCACC 974
Query 959 ATAGAAAAAGGAATACCGTTGGTTTTAAGTGTAGGGGCCTTAGATATGGTGAACTTTGGT 1018
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 975 ATAGAAAAAGGAATACCGTTGGTTTTAAGTGTAGGTGCCTTAGATATGGTGAACTTTGGT 1034
Query 1019 GGTAAAGATACAATACCTTCTCATTTCCAAACGAGAAAGATTCATGTTCACAATGAACAG 1078
|||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 1035 GGTAAAGATACAATACCTTCTCATTTCCAAACGAGAAAGATTCACGTCCACAACGAACAG 1094
Query 1079 GTTTCTCTCATCCGAACAACAGCAGAAGAGAATAA-AAAGTTTGCAAGGTTTATAGCAGA 1137
||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1095 GTTTCTCTCATCCGAACGACAGCAGAAGAGAATAAGAAA-TTTGCAAGGTTTATAGCAGA 1153
Query 1138 TAAACTGAACAAATCAACATCAAAAGTTAGGGTCTGCCTTCCAGAGAAAGGTATATCTGC 1197
||||||||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||
Sbjct 1154 TAAACTGAACAAATCAACATCAAAAGTAAGGGTTTGCATTCCAGAGAAAGGTTTATCTGC 1213
Query 1198 ACTGGATGCTCCAGGGAAGCCTTTCTGTGATCCAGAAGCTACCGGTGCTCTCATAAATGA 1257
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1214 ACTGGATGCTCCAGGGAAGCCTTTCTGTGATCCAGAAGCTACTGGTGCTCTCATAAATGA 1273
Query 1258 ATTGCAGACGCTCATTCAAACAAATGAAGACAGACAGGTCAATATTTATTCACACCACAT 1317
||| ||| |||||||||||| ||||| |||||||| |||||||||||||| ||||||||
Sbjct 1274 ATTACAGGGGCTCATTCAAACTAATGATGACAGACAAGTCAATATTTATTCTCACCACAT 1333
Query 1318 CAATGACCCTGAGTTTGCAGAGGCATTGGCTGCTTCATTTCTTGAGATTTGTCCAAATAC 1377
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1334 CAATGACCCTGAGTTTGCAGAGGCATTGGTTGCTTCATTTCTTGAGATTTGTCCAAAAAC 1393
Query 1378 CTATGCACAAATCAAACCCTCTGAAACGGCTTCGACTAAGCCTAGTACTAGAGAGCATGA 1437
|| |||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct 1394 TTACGCACAAATCAAACCCTCTGAAACGACTTCGACTAAACCTAGTACTGGAGAGCATGA 1453
Query 1438 TGATGGGCATGTGTCTAAGGTGAGGTCGAGGCCTGAAAGGATTCCATACAGTCCTAAAGA 1497
|||||| |||||| | | | ||||||| |||||||||||||||||||||||||||
Sbjct 1454 TGATGGACATGTG---A-G---A--TCGAGGCTTGAAAGGATTCCATACAGTCCTAAAGA 1504
Query 1498 TTTTCCCAATGCAAAGCCAGAAACCTTGGAACGAACTCAGACCATTCTGGGACGGCTGAG 1557
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1505 GTTTCCCAATGCAAAGCCAGAAACCTTGGAACGAACTCAGGCCATTTTGGGACGGTTGAG 1564
Query 1558 AGATCAAATAGAGAAGGGAATACCAATAATCGGGGGAGGTGCTGGTACGGGAATATCTGC 1617
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1565 AGATCAAATAGAGAAGGGAATACCAATAATTGGGGGAGGTGCTGGTACTGGAATATCTGC 1624
Query 1618 AAAGTTTGAGGAAGCTGGTGGGATTGATTTGATAGTGATATACAACTCTGGACGTTTTCG 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 AAAGTTTGAGGAAGCTGGTGGGATTGATTTGATAGTGATATACAACTCTGGACGTTTTCG 1684
Query 1678 GATGGCTGGAAGAGGATCCTTAGCAGGCTTACTTCCATTTGCTGATGCCAATGCAGTCGT 1737
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 TATGGCTGGAAGAGGATCCTTAGCAGGCTTACTTCCATTTGCTGATGCCAATGCAGTCGT 1744
Query 1738 GCTTGAAATGGCAAATGAAGTTTTGCCCGTGGTGAAGGCGGTGCCTGTTCTGGCTGGGGT 1797
|||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 1745 GCTTGAAATGGCAAATGAAGTTTTACCTGTAGTGAAGGCGGTGCCTGTTCTGGCTGGGGT 1804
Query 1798 GTGCGCAACAGATCCATTTCGACGTATGGACTATTTCCTGAAGCAGTTGGAGTCCATTGG 1857
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1805 GTGCGCAACAGATCCATTTCGTCGTATGGACTATTTCCTGAAGCAGTTGGAGTCCATTGG 1864
Query 1858 GTTCGTTGGTGTCCAGAACTTTCCAACTGTTGGTCTCTTTGATGGTAATTTTAGACAAAA 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1865 GTTCGTTGGTGTCCAGAACTTTCCAACTGTTGGTCTCTTTGATGGTAATTTTAGACAAAA 1924
Query 1918 TCTTGAGGAGACAGGAATGGGATATGGTCTTGAAGTTAAAATGATCTCAGAAGCGCATAA 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1925 TCTTGAGGAGACAGGAATGGGATATGGTCTTGAAGTTAAAATGATCTCAGAAGCGCACAA 1984
Query 1978 GATGGGGCTGTTGACCACTCCATATGCTTTCAACCCGAAAGAAGGAGAAGAAATGGCAAA 2037
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1985 AATGGGGCTGTTGACCACTCCATATGCTTTCAACCCAAAAGAAGGAGAAGAAATGGCAAA 2044
Query 2038 AGCGGGAGCTGATATCATAGTAGCCCACATGGGTCTAACGACATCCGGAAATATTGGGGC 2097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2045 AGCGGGAGCTGATATCATAGTAGCCCACATGGGTCTAACGACATCCGGAAATATTGGGGC 2104
Query 2098 GAAAACTGCAGTGTCTGTGGAAGAAAGCGTTGTTCGTGTACAAGCTATTGCAGATGCTGC 2157
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2105 GAAAACCGCAGTTTCAGTGGAAGAAAGCGTTGTTCGTGTACAAGCTATTGCAGATGCTGC 2164
Query 2158 TCGTAGATTCAACCCAGACATCATCGTCCTCTGCCACGGAGGTCCGATATCGGGTCCTGA 2217
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 2165 TCGTAGATTCAACCCAGACATTATCGTCCTCTGCCACGGAGGTCCGATATCGGGTCCAGA 2224
Query 2218 AGAGGCAGAGTTTGTGTTGAAGAGAACACAGGGTTGTGTCCATGGCTTCTATGGAGCATC 2277
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2225 AGAGGCAGAGTTTGTGTTGAAGAGAACACAGGGTTGTGTCCATGGCTTCTACGGAGCATC 2284
Query 2278 AAGCATGGAAAGGCTACCTGTAGAACAAGCTATAACAAGCACTGTTCAAAAGTACAAGTC 2337
|||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||
Sbjct 2285 AAGCATGGAAAGGCTACCTGTAGAACAAGCAATAACAAACACTGTTCAAAAATACAAGTC 2344
Query 2338 CATAGCGATCAAGTGAAGTCAAAGTAATAAGTTCACTTATAAACCTGTATCTTTGGTGTT 2397
|||| |||||||||||||||||| ||||||||||||||| |||||| |||||||||||||
Sbjct 2345 CATATCGATCAAGTGAAGTCAAAATAATAAGTTCACTTAGAAACCTTTATCTTTGGTGTT 2404
Query 2398 TCTTGTATATG-GCATGTGTTGTGGCCTGTGGGTGTGAATGTTTCCTTTTGTTGAATGGC 2456
||| |||||| |||||||||||||||| |||||||| |||||||||||||||| ||||
Sbjct 2405 TCTAGTATATTTGCATGTGTTGTGGCCTATGGGTGTGGATGTTTCCTTTTGTTGCATGGT 2464
Query 2457 tttttttttCTGGTCATCTTTGATTGCCTCTGCAGAATCTTATATGATCTCTAGTTCAGT 2516
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2465 TTTTTTTTTCTGGTCATCTTTGATTGCCTCTGCAGGATCTTATATGATCTCTAGTTCTGT 2524
Query 2517 ATTACACGttttt-tatttttatttAATAAAGTTCATAGTTCTCAACTCTTATCATTT 2573
||||||||||||| |||||| | | ||||||||||||| |||||||||||||||||
Sbjct 2525 ATTACACGTTTTTGTATTTT-A---A-TAAAGTTCATAGTGCTCAACTCTTATCATTT 2577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127725036878
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5