BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496965
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66410.1 | Symbols: PLP3b | phosducin-like protein 3 homolog... 1336 0.0
AT3G50960.1 | Symbols: PLP3a | phosducin-like protein 3 homolog... 689 0.0
> AT5G66410.1 | Symbols: PLP3b | phosducin-like protein 3 homolog
| chr5:26519770-26521696 FORWARD LENGTH=1069
Length=1069
Score = 1336 bits (723), Expect = 0.0
Identities = 795/830 (96%), Gaps = 3/830 (0%)
Strand=Plus/Plus
Query 18 AAA-AGATGGATCCGGATGCGGTGAAGTCGACCCTTTCGAATCTGGCATTCGGGAATGTA 76
||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 134 AAAGAGATGGATCCGGATACGGTGAAGTCGACCCTCTCGAATCTGGCATTCGGGAATGTA 193
Query 77 TTGGCGGCAGCTGCTCGAGATTATAAAAAGGAAGTTCTTGCAAATGAGAAGGCGCAAGGA 136
||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 194 TTGGCGGCAGCTGCTAGAGATTATAAAAAGGAAGTTCTTGCAAATGAAAAGGCACAAGGA 253
Query 137 TCAAGACCTGTCAACGAGGAAGTTGATCTTGACGATTTGATGGATGATCCAGAGCTAGAG 196
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 254 TCAAGACCTGTCAACGAGGAAGTTGATCTTGACGAATTGATGGATGATCCAGAGCTAGAA 313
Query 197 AAGTTGCACGCAGATAGGATTGCAGCACTCAAGAGAGAAGTGGAAAAGAGAGAAGCTTTC 256
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 314 AAGTTGCACGCAGATAGGATTGCAGCACTCAGGAGAGAAGTGGAAAAGAGAGAAGCATTC 373
Query 257 AAAAGGCAAGGACATGGTGAATACCGAGAAGTTAGCGAAGGTGACTTCTTGGGAGAAGTC 316
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 374 AAAAGACAAGGACATGGTGAATACCGAGAAGTTAGCGAAGGCGACTTCTTGGGAGAAGTC 433
Query 317 ACAAGGACTGACAAAGTCATATGTCACTTCTACCACAAGGAATTCTATCGCTGCAAGATT 376
||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 434 ACAAGGAGTGAAAAAGTTATATGTCACTTCTACCACAAGGAGTTCTATCGCTGCAAGATA 493
Query 377 ATGGACAAGCATTTGAAGACCCTTGCTCCTAGACATGTGGACACAAAGTTCATTAAGATG 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 ATGGACAAGCATTTGAAGACCCTTGCTCCTAGACATGTGGACACAAAGTTCATTAAGATG 553
Query 437 GACGCTGAGAATGCTCCCTTCTTCGTCACCAAGCTTGCAATCAAGACTTTGCCTTGTGTT 496
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 554 GACGCTGAGAACGCTCCCTTCTTCGTCACCAAGCTTGCAATCAAGACTTTGCCGTGTGTT 613
Query 497 ATCCTTTTTAGCAAGGGAATCGCGATGGATAGGCTTGTCGGTTTTCAGGATCTAGGTGCC 556
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 614 ATCCTTTTTAGCAAGGGAATCGCGATGGATAGGCTTGTCGGGTTTCAAGATCTAGGTGCC 673
Query 557 AAGGACGATTTTTCCACAATGAAGCTGGAGAACCTTCTGGTCAAGAAAGGAATGCTTAGT 616
||||||||||| ||||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct 674 AAGGACGATTTCTCCACGACGAAGCTGGAGAATCTTCTGGTCAAGAAAGGAATGCTTAGT 733
Query 617 GAGAAGAGAAAAGAGGAAGATGAGGAAGATTACGAGTATCAAGAAAGCATACGTCGGTCC 676
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 GAAAAGAGAAAAGAGGAAGATGAGGAAGATTACGAGTATCAAGAAAGCATACGTCGGTCC 793
Query 677 GTTAGGTCTTCAGCGAATGTCAACTCTGATTCAGATTGATCTCGAAGCTCTTCTCATGGT 736
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct 794 GTTAGGTCTTCAGCGAATGTCGACTCTGATTCAGATTGATCTCGAAGCTTTTCTCATAGT 853
Query 737 AGATCTCCGAGCCTTTTTGTATTTTGTTTTCACCGCTGCTCTGTTTTATTTGTTTGGGT- 795
||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 854 AGACCTCCGAGCCTTTTTGTATTTTGTTTTCACCGCTGCTCTGTTTGAATTGTTTGG-TC 912
Query 796 TATGAATCTTATGCTTCTATAAGTCTTTATAGTGGGAAAGTTCGTTCCAC 845
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 913 TATGAATCTTATGCTTCTATAAGTCTTTATAGTGGGAAATTTCGTTCCAC 962
> AT3G50960.1 | Symbols: PLP3a | phosducin-like protein 3 homolog
| chr3:18938697-18940428 REVERSE LENGTH=1020
Length=1020
Score = 689 bits (373), Expect = 0.0
Identities = 599/708 (85%), Gaps = 16/708 (2%)
Strand=Plus/Plus
Query 18 AAAAGATGGATCCGGATGCGGTGAAGTCGACCCTTTCGAATCTGGCATTCGGGAATGTAT 77
||||||||||||| ||||| || || ||||| || |||||||| ||||| || ||||||
Sbjct 129 AAAAGATGGATCCAGATGCAGTCAAATCGACTCTCTCGAATCTAGCATTTGGAAATGTAA 188
Query 78 TGGCGGCAGCTGCTCGAGATTATAAAAAGGAAGTTCTTGCAAATGAGAAGGCGCAAGGAT 137
||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 189 TGGCGGCTGCTGCAAGAAATTATCAAAAGGAAGTTCTTGCAAATGAGAAGGCGCAAGGAT 248
Query 138 CAAGA-CCTGTCAACGAGGAAGTTGATCTTGACGAT-TTGATGGATGATCCAGAGCTAGA 195
||| | ||||| || || || ||||||||||| || || ||||||||||||||||||||
Sbjct 249 CAA-ATCCTGTTAATGAAGAGGTTGATCTTGATGAACTT-ATGGATGATCCAGAGCTAGA 306
Query 196 GAAG-TTGCACGCAGATAGGATTGCAGCACTCAAGAGAGAAGTGGAAAAGAGAGAAGC-T 253
||| |||||||||||||||||||||||||| |||||||| || || ||||||||| | |
Sbjct 307 -AAGATTGCACGCAGATAGGATTGCAGCACTAAAGAGAGAGGTTGAGAAGAGAGAATCGT 365
Query 254 TTCAAAAGGCAAGGACATGGTGAATACCGAGAAGTTAGCGAAGGTGACTTCTTGGGAGAA 313
|| ||||| ||||| ||||||||||| ||||| || || ||||| || |||||||| |||
Sbjct 366 TT-AAAAGACAAGGGCATGGTGAATATCGAGAGGTGAGTGAAGGAGATTTCTTGGGTGAA 424
Query 314 GTCACAAGGACTGACAAAGTCATATGTCACTTCTACCACAAGGAATTCTATCGCTGCAAG 373
||||| |||| ||| ||||| |||||||| |||||||| |||||||| || || ||||||
Sbjct 425 GTCACCAGGAGTGAGAAAGTGATATGTCATTTCTACCATAAGGAATTTTACCGGTGCAAG 484
Query 374 ATTATGGACAAGCATTTGAAGACCCTTGCTCCTAGACATGTGGACACAAAGTTCATTAA- 432
||||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||
Sbjct 485 ATTATGGACAAGCATCTGAAAACTCTTGCACCTAGACATGTGGACACAAAGTTCATTAAA 544
Query 433 GATGGACGCTGAGAATGCTCCCTTCTTCGTCACCAAGCTTGCAATCAAGACTTTGCCTTG 492
| ||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||||||||
Sbjct 545 G-TGGACGCAGAGAATGCTCCTTTCTTTGTCACGAAGCTTGCAATAAAGACTTTGCCTTG 603
Query 493 TGTTATCCTTTTTAGCAAGGGAATCGCGATGGATAGGCTTGTCGGTTTTCAGGATCTAGG 552
||| | ||||| ||||||||| | |||||||||||||| || || || |||||||| ||
Sbjct 604 CGTTGTGCTTTTCAGCAAGGGAGTTGCGATGGATAGGCTAGTTGGGTTCCAGGATCTGGG 663
Query 553 TGCCAAGGACGATTTTTCCAC-AATGAAGCTGGAGAACCTTCTGGTCAAGAAAGG-AATG 610
||||||||||||| | || ||| || || |||||| |||| | || ||||| ||||
Sbjct 664 AACCAAGGACGATTTCACAACGAATAAA-CTAGAGAACGTTCTTCTTAA-AAAGGGAATG 721
Query 611 CTTAGTGAGAAGA-GAAAAGAGGAAGATGAGGAAGATTACGAGTATCAAGAAAGCATACG 669
|| || |||||| |||| ||||||||||| ||||| ||| |||||||| ||||||||
Sbjct 722 CTCAGCAAGAAGAAGAAA-GAGGAAGATGATGAAGACGCCGAATATCAAGAGAGCATACG 780
Query 670 TCGGTCCGTTAGGTCTTCAGCGAATGTCAACTCTGATTCAGATTGATC 717
|||| ||||||||||||| |||| | |||||||||| || |||||
Sbjct 781 GAGGTCTGTTAGGTCTTCAGAGAATCTGGACTCTGATTCTGACTGATC 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44155815213
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5