BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496967
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66400.1 | Symbols: RAB18, ATDI8 | Dehydrin family protein |... 824 0.0
> AT5G66400.1 | Symbols: RAB18, ATDI8 | Dehydrin family protein
| chr5:26518297-26519242 REVERSE LENGTH=864
Length=864
Score = 824 bits (446), Expect = 0.0
Identities = 540/583 (93%), Gaps = 15/583 (3%)
Strand=Plus/Plus
Query 232 AGGTTATGGAACTGGTGGCCAAGGATACGGCACCGGGACCGGGACTGAAGCCTTTGGAAC 291
||| || ||||| ||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 275 AGGGTACGGAACCGGTGGCCAAGGATACGGAACCGGGACCGGGACTGAAGGCTTTGGAAC 334
Query 292 TGGCGGAGGAGCTAGGCACCAAGGCCAAGAGCAACTCCACAAGGAAAGTGGTGGTGGCTT 351
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 335 TGGCGGAGGAGCTAGGCACCACGGCCAAGAGCAACTCCACAAGGAAAGTGGTGGTGGCTT 394
Query 352 GGGAGGAATGCTTCATCGCTCCGGGTCTGGATCCAGCTCTAGCTCGGAGGATGATGGACA 411
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 395 GGGAGGAATGCTTCACCGCTCCGGATCTGGATCCAGCTCTAGCTCGGAGGATGATGGACA 454
Query 412 AGGAGGGAGGAGGAAGAAGGGAATAACACAAAAGATCAAGGAGAAGTTGCCAGGTCATCC 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 AGGAGGGAGGAGGAAGAAGGGAATAACACAAAAGATCAAGGAGAAGTTGCCAGGTCATCA 514
Query 472 TGACCAGTCGTCTGGTCAAGCTCAAGGGATGAGCGGCATGGGAACCGGATATGATGCTGG 531
||| ||||| | ||||||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct 515 TGATCAGTC-T--GGTCAAGCTCAAGCGATGGGCGGCATGGGATCCGGATATGATGCTGG 571
Query 532 TGGCTACGGCGGTGAGCGCCAAGAGAAGAAGGGGATGATGGACAAGATCAAGGATAAGCT 591
||||||||| ||||||| ||| |||||||||||||||||||||||||||||||| |||||
Sbjct 572 TGGCTACGGTGGTGAGCACCACGAGAAGAAGGGGATGATGGACAAGATCAAGGAAAAGCT 631
Query 592 TCCCGGTGGTGGTGGTCGTTAAGCTTCAAACAAACAAACGTCTATACATATTGAATAAAA 651
|||||||||||| ||||||||||| ||||| | || |||||||||| |||||||
Sbjct 632 TCCCGGTGGTGGC---CGTTAAGCTTCGAACAATC----GTGTATACATATTAAATAAAA 684
Query 652 ATAAGGAGGGTGTGTAACGCAGTCGCATTTGGTCGTTGTATGTGTGCTTTTTATGTATGT 711
|||| |||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 685 ATAATGAGGGTTTGTAACGCAGTCGCATTCGGTCGTTGTAT-TGTGCTTTTTATGTATGT 743
Query 712 ACGTCCTGCGATGTGTTGTTGGTTTA-TATACAGGAGTGTGTAATGAGCATCTGGCTCTT 770
|||||||||||||||| |||| |||| | |||| ||||||||||||||||||||||||||
Sbjct 744 ACGTCCTGCGATGTGT-GTTG-TTTACT-TACATGAGTGTGTAATGAGCATCTGGCTCTT 800
Query 771 TTTATGTTCTGAGATGTTTGTATTATGTAATTTCATATCTATA 813
||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 801 TTTATGTTCTGAGATGTTTGTGTTATGTAATTTCACATCTATA 843
Score = 209 bits (113), Expect = 3e-53
Identities = 171/195 (88%), Gaps = 20/195 (10%)
Strand=Plus/Plus
Query 1 ATCGATCAAACTCATCAAAGTCTAATATCACAAAGAAAGAGTTTAATATTCT-A-TAGCT 58
|||||||||||||||||||||||||||||||||||||||||||| | || | | |||||
Sbjct 1 ATCGATCAAACTCATCAAAGTCTAATATCACAAAGAAAGAGTTT--T-TT-TAACTAGCT 56
Query 59 TAGCTCAAAGTGTTTGCTTaagagaagaagaagaagaagaagaTGGCGTCTTACCAGAAT 118
||||||||||||||||||| ||| | |||||||| |||||||||||||||||
Sbjct 57 TAGCTCAAAGTGTTTGCTT--------AAG-ACAAGAAGAACATGGCGTCTTACCAGAAC 107
Query 119 CGTCCAGGAGGTCAGGCCACTGACGAGTACGGAAACCCGATCCAGCAG---T-TGGACGA 174
|||||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 108 CGTCCAGGAGGTCAGGCCACTGACGAGTACGGAAACCCGATCCAGCAGCAGTATG-ACGA 166
Query 175 GTACGGAAACCCGAT 189
||||||||| |||||
Sbjct 167 GTACGGAAATCCGAT 181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5