BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496970

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G66370.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   582    8e-166


> AT5G66370.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G51020.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:26512200-26512824 REVERSE LENGTH=453
Length=453

 Score =  582 bits (315),  Expect = 8e-166
 Identities = 410/453 (91%), Gaps = 17/453 (4%)
 Strand=Plus/Plus

Query  1    ATGTTTTCATCAAATAATCGTTCTACACAACTGACTTGTGGGTTTAAGGTGAACACGAAC  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1    ATGTTTTCATCAAATAATCGTTCTACACAACTGACTTGTGGGTTTAAGGTGAACACCAAC  60

Query  61   TCCCCAGAGTGGCATAAGAGCATGACAAGGATTCTAAAGAAGATCAAAGGAGGGGATTTT  120
            ||| | |||||| |||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct  61   TCCTCTGAGTGGTATAAGAGCATCACAAGGATTCTAAAGAAGGTCAAAGGAGGGGATTTT  120

Query  121  TTGTTAGACGTGGACCAAGGACTAGCATACATTTCGGGTGAAGGAGACCCAAACAAACTA  180
            |||||||||| |||| |||||  ||||||||||||||||  |||||| ||| | ||||||
Sbjct  121  TTGTTAGACGCGGACGAAGGAAGAGCATACATTTCGGGTTTAGGAGATCCACATAAACTA  180

Query  181  TTAAAACTAATGGGTTCGATAAAAGGCAAGGCAGCTGAAATGACGTTTGTGAAAACCGGT  240
             ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CTAAAACTAATGGGTTCGGTAAAAGGCAAGGCAGCTGAAATGACGTTTGTGAAAACCGGT  240

Query  241  GGACG--A-CAGCATC--CA-CAT--T-ATCC---T-AATCT--TCTTCATTACAACTCC  285
            ||||   | || ||||  || |||  | ||||   | || ||  ||||||||||||||||
Sbjct  241  GGACATCATCATCATCATCAGCATCATTATCCACATGAACCTAATCTTCATTACAACTCC  300

Query  286  AACTCCTATTACGGCCATCCACCATCTTACAACAGTTATTGGCCGAGTGATGATTGTTAC  345
             |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct  301  GACTCCTATTACGGCCAGCCACCATCTTACAACAGTTATTGGCCGAGTGATAATTGTTAC  360

Query  346  TCTCGCCAGCATCCGCCGTATTATTCTCAGTCACTAGCGATGCAACCTTACCATCATCAA  405
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct  361  TCTCGCCAGCATCCGCCTTATTATTCTCAGTCACTAGCGATGCAACCTTACCATCACCAA  420

Query  406  TATCCATATCCAGGATATAGTAAT-TACGGTTA  437
            |||||||||||||| ||||||| | ||||||||
Sbjct  421  TATCCATATCCAGGTTATAGTA-TCTACGGTTA  452



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21112454580


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5