BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496973
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66320.1 | Symbols: GATA5 | GATA transcription factor 5 | ch... 2222 0.0
AT3G51080.1 | Symbols: GATA6 | GATA transcription factor 6 | ch... 56.5 7e-07
> AT5G66320.1 | Symbols: GATA5 | GATA transcription factor 5 |
chr5:26495955-26497855 REVERSE LENGTH=1494
Length=1494
Score = 2222 bits (1203), Expect = 0.0
Identities = 1370/1448 (95%), Gaps = 22/1448 (2%)
Strand=Plus/Plus
Query 5 AAGGGAGAGGCTGAGATTACCAAATTTAATGCTTTACCAAACTCACATAACCA--TC-TC 61
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 48 AAGGGAGAGGCTGAGATTACCAAATTGAATGCTTTACCAAACTCACATAACCATCTCTTC 107
Query 62 TTGATCCATTT-TTTAAtctctt--tcctc-ttattcttcttcttcttcttcttcttctc 117
|||| || ||| |||||||| || | ||| || ||||||||||||||||||||||||||
Sbjct 108 TTGACCCTTTTCTTTAATCT-TTAAT-CTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTC 165
Query 118 gccaccgctccttcctccttccttctctctGTGTATCAGCttttttt-tCGATAGGACAA 176
|||||||||||||||||| |||||||||| |||||||| ||||||| ||||||||| ||
Sbjct 166 GCCACCGCTCCTTCCTCCCTCCTTCTCTC--TGTATCAG-TTTTTTTCTCGATAGGAAAA 222
Query 177 TGGAACAAACAGCGTTGAAGAGCAGCATCAGGAAAGAGATGGCTTTCAAAACGACTCCTC 236
|||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 223 TGGAACAAGCCGCGTTGAAGAGCAGCGTCAGGAAAGAGATGGCTCTCAAAACGACTTCTC 282
Query 237 CGGTTTACGAAGAGTTTCTTGCCGTCACCACCGCTCAGAATGGCTTTTCCCCCGAGGATT 296
||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||
Sbjct 283 CGGTTTACGAAGAGTTTCTTGCCGTCACCACCGCTCAAAATGGCTTTTCCGTCGACGATT 342
Query 297 TCTCCGTCGACGACTTGCTTGACTTGTCTAACGATGACGTTTTCGCCGACGAAGATACTG 356
|||| || |||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 343 TCTCTGTAGACGACTTGCTTGACTTGTCAAACGATGACGTTTTTGCCGACGAAGAAACTG 402
Query 357 ACCCCAAGGCTCAACAAGATATGGTCCGTGTTTCCTCTGAGGAACCCAACGACGACGGAG 416
||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 403 ACCTCAAGGCTCAACATGAGATGGTCCGTGTTTCCTCTGAGGAACCCAACGACGACGGAG 462
Query 417 ACGCCCTTCGCCGGAGCAGCGATTTCTCCGGCTGTGACGACTTTGGTTCTCTCCCTACAA 476
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 ACGCTCTTCGCCGGAGCAGCGATTTCTCCGGCTGTGACGACTTTGGTTCTCTCCCTACAA 522
Query 477 GCGAACTCTCTGTTCCGGCGGATGATTTAGCGAACCTTGAGTGGCTCTCTCATTTCGTGG 536
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GCGAACTCTCTCTTCCGGCGGATGATTTAGCGAACCTTGAGTGGCTCTCTCATTTCGTGG 582
Query 537 ATGACTCCTTCGCGGAATATTCGGGTCCAAACCTCACCGGAACCCCCACTGAGAAACCGG 596
| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 583 AGGACTCCTTCACGGAATATTCGGGTCCAAACCTCACCGGAACCCCGACTGAGAAACCGG 642
Query 597 CGTGGTTAACGGGTGACCGGAAACACCCTGTGACTCCGGCCACGGAAGAGTCCTGTTTCA 656
||||||||||||||||||||||||| ||||||||| | | |||||||||| |||||||||
Sbjct 643 CGTGGTTAACGGGTGACCGGAAACATCCTGTGACTGCAGTCACGGAAGAGACCTGTTTCA 702
Query 657 AATCCCCTGTTCCGGCTAAAGCCCGTAGCAAACGTAACCGCAATGGAGTCAAGGTCTGGT 716
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 703 AATCCCCTGTTCCGGCTAAAGCCCGTAGCAAACGTAACCGCAATGGCCTCAAGGTCTGGT 762
Query 717 CTCTTGGTTCGTCGTCCTCTTCAGGTCCTTCCTCGTCCGGTTCGACCTCCTCCTCTTCTT 776
| ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 763 CGCTTGGTTCGTCGTCCTCCTCGGGTCCTTCCTCGTCCGGTTCGACCTCCTCCTCCTCTT 822
Query 777 CGCGTCCTTCCAGCCCGTGGTTCTCCGGCGCTGAGATGCTCGAGCCAGTGGTCACGTCAG 836
|| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 823 CGGGTCCTTCCAGCCCGTGGTTCTCCGGCGCTGAGCTGCTCGAGCCTGTGGTCACGTCAG 882
Query 837 AGAGGCCACCGTTTCCCAAGAAGCATAAGAAAAGGTCGGCCGAGTCTGTTTTCTGCGGTC 896
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 883 AGAGGCCACCGTTTCCCAAGAAGCATAAGAAAAGGTCAGCCGAGTCTGTTTTCTCCGGTG 942
Query 897 AGCTGCAGCAGCTGCAACCTCAGCGAAGGTGCAGCCACTGCGGCGTTCAGAAAACTCCGC 956
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 943 AGCTGCAGCAGCTGCAACCTCAGCGAAAGTGCAGCCACTGCGGCGTTCAGAAAACTCCGC 1002
Query 957 AGTGGAGAGCCGGGCCAATGGGAGCCAAGACCCTGTGCAATGCGTGCGGTGTCCGGTACA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 AGTGGAGAGCCGGGCCAATGGGAGCCAAGACCCTGTGCAATGCGTGCGGTGTCCGGTACA 1062
Query 1017 AGTCGGGTCGGTTGCTACCTGAATACAGACCCGCTTGTAGCCCGACATTCTCGAGTGAGC 1076
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 AGTCGGGTAGGTTGCTACCGGAATACAGACCCGCTTGTAGCCCGACATTCTCGAGTGAGC 1122
Query 1077 TCCACTCGAACCACCACCGGAAAGTCATGGAGATGAGGCGGAAGAAGGAGCCAACCAGTG 1136
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1123 TGCACTCGAACCACCACCGGAAAGTCATAGAGATGAGGCGGAAGAAGGAGCCAACCAGTG 1182
Query 1137 ACAACGAAACCGGTTTAAACCAGATGGTTCAGTCCCCACAAGCTGTACCAAGTTTTTGAA 1196
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1183 ACAACGAAACCGGTTTAAACCAGCTGGTTCAGTCCCCACAAGCTGTACCAAGTTTTTGAA 1242
Query 1197 GAAATAGGGCCTTAATTAGAGCAGAGATTTAGGATCCGAGCCGGTTCAGTTGTTAGCCCC 1256
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1243 GAAATAGGGCCTTAATTAGAGCAGAGATTTAGGATCCGAACCGGTTCAGTTGTTAGCCCC 1302
Query 1257 AAGTTAGTTTCTCATTGACTTGTTTCTT-GTATATTACTTTCATTATTTTTAGCATTTAC 1315
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1303 AAGTTAGTTTCTCATTGACTTGTTTCTTTGTATATTACTTTCATTATTTTTAGCATTTAC 1362
Query 1316 tttttttttttttGTTACCGTAGTTTGATTTTTCATGCTAGGAGTCTCCGTAAGTTCTTA 1375
||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1363 TTTTTTTTT----GTTACAGTAGTTTGATTTTTCATGCTAGGAGTATCCGTAAGTTCTTA 1418
Query 1376 GTAACTGATTAGGTaaaaaaaaaaCTCGTTTGTATTGTACTCTTTCGCGTTAATTTTTTC 1435
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1419 GTAACTGATTAGGTCAAAAA----CTCGTTTGTATTGTACTCTTTCGCGTTAATTTTTTC 1474
Query 1436 AGTTCAAA 1443
|||| |||
Sbjct 1475 AGTTTAAA 1482
> AT3G51080.1 | Symbols: GATA6 | GATA transcription factor 6 |
chr3:18973213-18974892 FORWARD LENGTH=1297
Length=1297
Score = 56.5 bits (30), Expect = 7e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 289 CGAGGATTTCTCCGTCGACGACTTGCTTGACTT 321
||| |||||||||||||||||||||||||||||
Sbjct 209 CGATGATTTCTCCGTCGACGACTTGCTTGACTT 241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71134172265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5