BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496976
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66300.1 | Symbols: ANAC105, VND3, NAC105 | NAC domain conta... 1441 0.0
> AT5G66300.1 | Symbols: ANAC105, VND3, NAC105 | NAC domain containing
protein 105 | chr5:26479793-26481334 REVERSE LENGTH=1178
Length=1178
Score = 1441 bits (780), Expect = 0.0
Identities = 954/1035 (92%), Gaps = 24/1035 (2%)
Strand=Plus/Plus
Query 1 GGTTTCTTCTATGATCGATCTTTCTAAGATCAAGAAGAAACCGCAGCCAAATAAACCCTA 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 12 GGTTTCTTCTATGATCGATCTTTCTAAGATCAAGAAGAAACCGCAGCGAAATAAATCCTA 71
Query 61 GAAGATAACTATCAATATGATGAAGGTGGATCAAG---AGTCGTGTAGTATACCGCCTGG 117
||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||
Sbjct 72 GAAAATAACTATCAATATGATGAAGGTTGATCAAGATTATTCGTGTAGTATACCGCCTGG 131
Query 118 ATTTAGGTTTCATCCGACAGACGAAGAACTTGTCGGATATTATCTCAAGAAGAAAGTCGC 177
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 132 ATTTAGGTTTCATCCGACAGATGAAGAACTTGTCGGATATTATCTCAAGAAGAAAATCGC 191
Query 178 CTCCCAGCGGATTGATCTCGACGTTATCAGAGAAATTGATCTTTACAAGATCGAACCATG 237
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 CTCCCAGAGGATTGATCTCGACGTTATCAGAGAAATTGATCTTTACAAGATCGAACCATG 251
Query 238 GGATCTACAAGAGAGATGTAGGATAGGGTACGAGGAGCAAAAGGAGTGGTATTTCTTCAG 297
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 252 GGATCTACAAGAGAGATGTAGGATAGGGTACGAGGAGCAAACGGAGTGGTATTTCTTCAG 311
Query 298 CCATAAAGACAAGAAGTATCCGACTGGAACTAGGACAAACCGAGCCACCGTGGCCGGTTT 357
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 312 CCATAGAGACAAGAAGTATCCGACTGGGACTAGGACAAACCGAGCCACCGTGGCCGGTTT 371
Query 358 CTGGAAAGCAACGGGCAGGGACAAGGCGGTTTACCTCAACTCCAAACTTATCGGTATGAG 417
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 CTGGAAAGCAACGGGCCGGGACAAGGCGGTTTACCTCAACTCCAAACTTATCGGTATGAG 431
Query 418 AAAAACACTTGTCTTTTACCGAGGTCGAGCTCCTAATGGCCAAAAGTCTGATTGGATCAT 477
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 432 AAAAACGCTTGTCTTTTACCGAGGTCGAGCGCCTAATGGCCAAAAGTCCGATTGGATCAT 491
Query 478 TCACGAATACTACAGCCTCGAGTCACACCAGAACTCTCCTCCGCTGGAGGAAGGTTGGGT 537
|||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||
Sbjct 492 TCACGAATACTACAGCCTCGAGTCACACCAGAACTCTCCTCCACAGGAAGAAGGATGGGT 551
Query 538 AGTGTGTAGAGCATTCAAGAAACGAACGAACGTCCCAACCAAAAGAAGGCAACTTTGGGA 597
||||||||||||||| ||||||||||||| | ||||||| ||||| ||||||||||||||
Sbjct 552 AGTGTGTAGAGCATTTAAGAAACGAACGACCATCCCAACAAAAAGGAGGCAACTTTGGGA 611
Query 598 TTCGAACTGCTTCTTCTACGACGCCAGT-ACTCTCTTGGAACCTCTGGAGAAGCGAGCCA 656
| |||||||||| |||||||||| | | ||||||||||||||||| || ||||||||||
Sbjct 612 TCCGAACTGCTTATTCTACGACGAC-GCCACTCTCTTGGAACCTCTCGACAAGCGAGCCA 670
Query 657 GACATAATCCTGACTTTGTCGGCACACCGTTTAAGCAAGAACTACTCTCCGAGGCCAATC 716
||||||||||||| ||| || ||||||||| ||||||||||||||||||||||||| ||
Sbjct 671 GACATAATCCTGATTTTACCGCCACACCGTTCAAGCAAGAACTACTCTCCGAGGCCAGTC 730
Query 717 ACGTCGAAGATGGAGATTTCGGATCTATGTACCTTCAATCCATGGATGATGATCAATTAT 776
||||| | ||||||||||||||||||||||||||||||| ||| |||||||||||||| |
Sbjct 731 ACGTCCAGGATGGAGATTTCGGATCTATGTACCTTCAATGCATCGATGATGATCAATTCT 790
Query 777 ACCAGCTTCCTCAGCTGGAGAGCCCCTCTCTTCCGTCGGAAATAACTCCGCA--G-A-T- 831
||||||||||||||| |||||||||||||||||||||||||||||||| || | | |
Sbjct 791 CCCAGCTTCCTCAGCTCGAGAGCCCCTCTCTTCCGTCGGAAATAACTCCCCATAGTACTA 850
Query 832 -TT---CGGAGAACAGTAGCCGGAAAGATAACGTGAGCGCCGAGAAGAGGATCACTGACT 887
|| | ||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 851 CTTTTTCTGAGAACAGTAGCCGGAAAGATGACATGAGCTCCGAGAAGAGGATCACTGACT 910
Query 888 GGAGATCTCTAGATAAATTCGTGGCGTCGCAGTTGTTGATGAGTAGTGGCGAAGACTAAA 947
|||||| ||||||||| ||||||||||| || || ||||||||| | | ||||||||||
Sbjct 911 GGAGATATCTAGATAAGTTCGTGGCGTCTCAATTTTTGATGAGT-G-GA-GAAGACTAAA 967
Query 948 A--GGCTTCTTTTCTATGCATGCATGCAC-ATGAAAAGTCGTCGTATTTTGGATTTACAT 1004
| ||||| | |||||||||||||||| | |||| ||||||| |||||||||||||||
Sbjct 968 AAAGGCTT-TC--CTATGCATGCATGCACTA-GAAACGTCGTCGCATTTTGGATTTACAT 1023
Query 1005 ATATGGTCGTAATAA 1019
|||||||||||||||
Sbjct 1024 ATATGGTCGTAATAA 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49932742118
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5