BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496977

Length=865
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G66290.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  1338    0.0  
  AT5G66280.1 | Symbols: GMD1 | GDP-D-mannose 4,6-dehydratase 1 |...   110    3e-23


> AT5G66290.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
LOCATED IN: cellular_component unknown; EXPRESSED 
IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:26477661-26479441 REVERSE LENGTH=865
Length=865

 Score = 1338 bits (724),  Expect = 0.0
 Identities = 824/871 (95%), Gaps = 12/871 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAGCATCAGATTCAACTCTGCTAGGCTCTCAGGAAAATCGAGGTGGTGATGTGATT  60
            |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct  1    ATGGGAGCATCAGATTCAACTCTGCTAGGCTCTCAGGAAAATCGA---GGTGATGTGATT  57

Query  61   ACGACCATCTCTCATCGATCCGAGATAGTCGATCCCATTCTCGAGAATCTCAAAGCCCTC  120
            ||||| || ||||||||||| || |||||||||||||||||||||||||| ||||| |||
Sbjct  58   ACGACTATATCTCATCGATCAGAAATAGTCGATCCCATTCTCGAGAATCTTAAAGCTCTC  117

Query  121  ACAGTTAGTAGGCCAATATTGAAGTCTCCTCCCACGGAAAGTAGCTTAACAGATATCTTA  180
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  118  ACAGTAAGTAGGCCAATATTGAAGTCTCCTCCCACGGAAAGTAGCTTAACAGATATCTTA  177

Query  181  GTGAGAAAAGCTCTATCCAGTTCCTCTTCCAATACGGTTGATCCTCAAATACTTCTAGAG  240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  178  GTGAGAAAAGCTCTATCCAGTTCCTCTTCCAATACGGTTGATCCTCAAATACTTGTAGAG  237

Query  241  CTCTTCTCCATTTACCGACAATGGCAAGAGAGCAAAGCTCAAGATATTACCAAGAGACAG  300
            |||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||
Sbjct  238  CTCTTCTCCATTTACCGAGAATGGCAAGAGAACAAAGCTCAAGAAATTACCAAGAGACAG  297

Query  301  GAAGATATAGAAAACAAGATAGAAGTGGCAGATGCTTTGGCGACTAAACTTTTACAGAGG  360
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  298  GAAGATATAGAAAACAAGATAGAAGTCGCAGATGCTTTGGCGACTAAACTTTTACAGAGG  357

Query  361  TTTAACCACTCTGTTTCTGCAATGAGGACAACTTCCCAGCATTTATCTCAAGTTCATGGT  420
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  358  TTTAACCACTCTGTTTCTGCAATGAGGACAACTGCCCAGCATTTATCTCAAGTTCATGGT  417

Query  421  TTGCAGGTGGAGCTCGGGGAGCTTAAAGGAAGGTTAACTGAGGTGATCAGCAACTGCGAT  480
            |||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct  418  TTGCAGGTGGAGCTCGGGGAGCTTAAAGGAAGATTGACAGAGGTGATCAGCAACTGCGAT  477

Query  481  ACATTATGTAAGAGAATTAATTCTGAGGGACCTGAATCTCTGAGGTCCACAGTTACGCCT  540
            |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct  478  ACATTATGTAAGAGAATTAATTCTGAGGGACCTGAATCTCTGAGGTCCACAGTGGCGCCT  537

Query  541  TTTTCTCTTGCATCTCCCGATTCGGTCAGTACAAATACTACTAC---TCTGTCTTCTAAA  597
            ||||||||||||||||||||||||||||||| ||||||||||||   |||||||||||||
Sbjct  538  TTTTCTCTTGCATCTCCCGATTCGGTCAGTATAAATACTACTACAACTCTGTCTTCTAAA  597

Query  598  CCAGAGGCATAAGAGTAAATACTCTTAATGATAGTTAGATTGGTGAATCGAATACGTCTA  657
            || ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct  598  CCCGAGGCATAAGAGTAAATACTCTTAATGGTAGTTAGATTGGTGAATCGAATACGTGTA  657

Query  658  GTTCTACAGTATACTTTCTGATCTCCTCTGATTTTGCATAGATTCATGATGATGCTATTG  717
            ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  658  GTTCTACAGCATACTTTCTGATCTCCTCTGATTTTGCATAGATGCATGATGATGCTATTG  717

Query  718  ATTGATCTCTTTTATTACAAATCATTATTTTCTTTTGTCATTTCATCTTTAGGCTTT-CA  776
            |||||||| |||| |||||||||||| |||||||||||||||||||||||||||||| | 
Sbjct  718  ATTGATCT-TTTTGTTACAAATCATTGTTTTCTTTTGTCATTTCATCTTTAGGCTTTTCG  776

Query  777  TAATTTTTA-AGTTGATTGTGAGCAGTAAGAAACCATTGTTGTGATAAGAG-AAAATTCA  834
             | ||| || | | | |||||| |||||||||||||||||| ||||||| | ||||||||
Sbjct  777  -A-TTTGTACAATCGCTTGTGACCAGTAAGAAACCATTGTTCTGATAAGGGGAAAATTCA  834

Query  835  TATGTAATAAATATGCTTTGCTTGCCTTTTG  865
            |||||||||||||||||||| ||||||||||
Sbjct  835  TATGTAATAAATATGCTTTGTTTGCCTTTTG  865


> AT5G66280.1 | Symbols: GMD1 | GDP-D-mannose 4,6-dehydratase 1 
| chr5:26476166-26477754 FORWARD LENGTH=1589
Length=1589

 Score =  110 bits (59),  Expect = 3e-23
 Identities = 70/75 (93%), Gaps = 1/75 (1%)
 Strand=Plus/Minus

Query  792   TTGTGAGCAGTAAGAAACCATTGTTGTGATAA-GAGAAAATTCATATGTAATAAATATGC  850
             |||||| |||||||||||||||||| |||||| | |||||||||||||||||||||||||
Sbjct  1570  TTGTGACCAGTAAGAAACCATTGTTCTGATAAGGGGAAAATTCATATGTAATAAATATGC  1511

Query  851   TTTGCTTGCCTTTTG  865
             |||| ||||||||||
Sbjct  1510  TTTGTTTGCCTTTTG  1496



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42196683480


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5