BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496979
Length=1675
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66270.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 2137 0.0
> AT5G66270.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr5:26473233-26475783 REVERSE LENGTH=1841
Length=1841
Score = 2137 bits (1157), Expect = 0.0
Identities = 1489/1644 (91%), Gaps = 43/1644 (3%)
Strand=Plus/Plus
Query 33 AACACAAAGCGTATCGCCGACG--TCTCTTCTTATTC-CA-C--TC--TCTCATTGTCGA 84
|||||||| ||||||||||||| ||||||||||||| | | || ||||||||||||
Sbjct 52 AACACAAAACGTATCGCCGACGCCTCTCTTCTTATTCATATCTGTCTTTCTCATTGTCGA 111
Query 85 GTTTGGTCTAACATCTGATTTCTCGTTTCGTGTCGAATCTGAGAAAGTGGTTATTTGATT 144
||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| |
Sbjct 112 GTTTGGTCTAACATCTGATTTCTCGTTTCGTATAGAATCTGAGAAAGTGGTTA-GTGAAT 170
Query 145 TGACTTTAGAAA-AG---AAAATTG-A-TTTTGT-AGAGAAATATATATAAAGGATGATG 197
||||||||||| || |||| | |||||| |||| || ||| | | ||||||
Sbjct 171 AGACTTTAGAAAGAGTTTGCGATTGAATTTTTGTAAGAG-AA-ATA-GT--A--ATGATG 223
Query 198 AAGAAAACGAAGAAATCGAGAGTATCGTGGGCATCAGATAGTATGCTTTGTCAGGTTAAG 257
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 224 AAGAAAACGAAGAAAGGGAGAGTATCGTGGGCATCAGATAGTATGCTTTGTCAGGTAAAG 283
Query 258 TTGTTTCTCACTGATGATTGTCCCGCAAAAGTTGCATCGAATCTTCCACCTGGATTTGAA 317
|||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 284 TTGTTTCTTAGTGATGATTGTCCCGTTAAAGTTGCATCGAATCTTCCACCTGGTTTTGAA 343
Query 318 GCTACTGAGTATGCAACGAGGCGAATCCTCTCACACATTCCTCGGATCAAATGGAAACGC 377
|||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 344 GCTACTGATTATGCAACGAAGCGAATCATCTCACACATTCCTCGGATCAAATGGAAACGC 403
Query 378 CCACCAAAGGTGTTTGTCCTCAATGATGCTTTGCTTGTCGGGCGTGGTGGAGAGAGCACC 437
||||| | ||||||||||| |||||||||||||||| ||| |||||||| | |||| |
Sbjct 404 CCACC--A-TTGTTTGTCCTCGATGATGCTTTGCTTGTTGGGAGTGGTGGAAAAAGCATC 460
Query 438 GAGACTCGTACTGAGAATCTCAGGATTTCTAAAGTCTTGGAAGCTTTCTATCCACATCGC 497
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 461 GAGACTCGTTCTGAGAATCTTAGGATTTCTAAAGTCTTGGAAGCTTTCTATCCACATCGC 520
Query 498 TCTGTTATCCCTACTCGTCCTTCAGTCTCAC-C-GGCTGTAGAAGAAGCACACTATGACG 555
||||| |||||| |||||||||| | ||||| | ||||| ||||||| |||||||||||
Sbjct 521 TCTGTGATCCCTTCTCGTCCTTC-G-CTCACACTAGCTGTTGAAGAAGAACACTATGACG 578
Query 556 ACGGCAAAACTCCTAATATCCGTCTCACTCCCGTTGAAGATGAACGTGAGGCTGCTGTTG 615
||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| ||
Sbjct 579 ACGGCAAAACTCCTAATATCCCTCTCACTCACGTTGAAGATGAACGTGACGCTGCTGCTG 638
Query 616 AATCTTCCCACAGTTTCGAAGCTCCTGCAGCTGTTTCTGGACTTGGACCAGAGTTAAGTC 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 AATCTTCCCACAGTTTCGAAGCTCCTGCAGCTGTTTCTGGACTTGGACCAGAGTTAAGTC 698
Query 676 TTCTTGCTGCTGCAGCTTTGTCTGCGTTAACTAAGGAACAAGGG-TGTCAGGTCGATGCT 734
|||||||| |||||||||||||||| |||||||||||||| ||| | |||||||||| ||
Sbjct 699 TTCTTGCTTCTGCAGCTTTGTCTGCCTTAACTAAGGAACA-GGGCTCTCAGGTCGATCCT 757
Query 735 GATTTACTTGTCAAGTTACTCAGTGACCCCAAAATCGTTGAGAGCTTGATCAATGACATG 794
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 758 GATTTACTTGTCAAGTTACTCAGTGACCCCAAAATCGTTGAGAACTTGATCAATGGCATG 817
Query 795 AAAGGTAAACCACTTGAAACTGCAAATAACAGTCGAAGCACTGACACCAACAAACCTAGA 854
|||||||||||||||||||||||||||||||||| || |||||||| || | ||||||||
Sbjct 818 AAAGGTAAACCACTTGAAACTGCAAATAACAGTCTAAACACTGACATCACCGAACCTAGA 877
Query 855 CTTGCCCCTCAACATGTCACCTCCACAGCCATGGACAGAAACCCACCTCCCATACCTGGA 914
||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 878 CTTGCTCCTCAACATGTCACCTCCACAACCATGGACAGAAACCCACCTCCCATGCCTGGA 937
Query 915 AATGTCGTGCCACATAATGTACCTGTTTTTGTTCAGTCCAGTGCTACAGATCCTCCACTC 974
||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 938 AATGTTGCGCCACATAATGTACCTGTTTCGGTTCAGTCCAGTGCTACAGATCCTCCACTC 997
Query 975 CCCAAACCCACTCAGCCCATGTCAAGTACTCTATCAGTGAACGTTAACCTCCAGAAACCC 1034
|||||||||| |||||||||||| ||| |||| ||| ||||| ||| |||||||||||||
Sbjct 998 CCCAAACCCAATCAGCCCATGTCCAGTGCTCTCTCAATGAACCTTACCCTCCAGAAACCC 1057
Query 1035 ACCCTGGTTGTTCACAGCTATCCATTGTCTTCTGCTGGGATCAAACTTGAGGATTCTTAC 1094
|||| ||||||||||| ||||||||||||||||| || |||||| ||||||||||||||
Sbjct 1058 ACCCCGGTTGTTCACAACTATCCATTGTCTTCTG--GG-ATCAAAGTTGAGGATTCTTAC 1114
Query 1095 ACAGCTGCTGCTCCCTTGAAACCAAGCCCAGTTGATGATGTTGTAGTCTCGGAACAAAAG 1154
||||||||| | || |||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 1115 ACAGCTGCT-C-CC-TTGAAACCAAGCACAGGGGATGATGTTGTAGTCTCAGAACAAAAG 1171
Query 1155 ACCCAA-TCCCTTAACATGTCCAGCACTTGGAATATGAATAGGGTACCAGAATCAGCGAG 1213
|||||| ||| || | | | |||| ||||||||||||||| |||||| || |||||| |
Sbjct 1172 ACCCAACTCCTTTTCCCT-TGCAGCTCTTGGAATATGAATAAGGTACCGGAGTCAGCGCG 1230
Query 1214 AACTGAAACAGATGCTAAAATCCGTAATGGTAACACAAACCAGGATGGTGAGGTTTCTGC 1273
||||||||||||| || |||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 1231 AACTGAAACAGATCCTCAAATCCGTAATGGTAACACAAACCGGGATGATCAGGTTTCTGC 1290
Query 1274 AAAACCCGTGAAAAATCTAGACTACTTCAAGAGCCTCATTAGGGAACATGGGGCAGTCAA 1333
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1291 AAAACCCGTGAAAGATCTAGACTACTTCAAGAACCTCATTAGGGAACATGGGGCAGTCAA 1350
Query 1334 ACCGGCAACAAATGAAACTAACAATTACAAAGGAAGAGTTGATGATAAGAAAGTAGTAAA 1393
||||||||||| ||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 1351 ACCGGCAACAACTGAAACTAACAATTACAAAGGAAGAGTTGATCATAAGAAAATCGTAAA 1410
Query 1394 GGTTAAGATTCAGAAACCGTGCATGTATTTTAACAGAGCCAAAGGG-TGTAGGCTCGGCG 1452
||||| |||||||||||||||||||||||||||||| ||| ||||| ||| || | ||||
Sbjct 1411 GGTTAGGATTCAGAAACCGTGCATGTATTTTAACAG-GCCCAAGGGGTGTCGGATGGGCG 1469
Query 1453 AGAGTTGCTTGTATCTTCACGACCGCTCTAAAAGGTTGTGGACTGATGTTGCACCTCCTC 1512
||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||
Sbjct 1470 AGAGTTGCTTGTATCTTCACGACAGTTCTAAAAGGTTATGGACTGATGTTGCACCTCCTC 1529
Query 1513 ACTTTCCCAGAGCTAAGAGACTCAAGTTTAGATCGTAGCAGAGCAACTATAAAACTCAAA 1572
||||||||||||||||||||||||||||| ||||||| | ||| || ||| |||||||
Sbjct 1530 ACTTTCCCAGAGCTAAGAGACTCAAGTTTGGATCGTAATACAGCTACGATATGACTCAAA 1589
Query 1573 ATTTAACCCCAAGCATGTCTGAAAT-ATTGGTAAATAGCTTCATCCAAATTCTGATAAGT 1631
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1590 ATTTAACACCAAGCATGTCTGAAATTATTGGTAAATAGCTTCATCCAAATTCTGATAACT 1649
Query 1632 TGTTTAACAAGTTTCGCAAAGTTA 1655
||||||||||||||| ||||||||
Sbjct 1650 TGTTTAACAAGTTTCCCAAAGTTA 1673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82780698705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5