BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496982
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66250.4 | Symbols: | kinectin-related | chr5:26468535-2647... 1099 0.0
> AT5G66250.4 | Symbols: | kinectin-related | chr5:26468535-26470554
FORWARD LENGTH=1337
Length=1337
Score = 1099 bits (595), Expect = 0.0
Identities = 787/873 (90%), Gaps = 39/873 (4%)
Strand=Plus/Plus
Query 19 CCAAGTCAACCCGACCCGACTGCGGTCTCTTCAGGGTTGATCGATCGGCCGGGACCTGAT 78
||||||||||||||||||||| || || | || || | | ||||||||||||||||||
Sbjct 79 CCAAGTCAACCCGACCCGACTTCGTTCCCATC--GG-T--T-GATCGGCCGGGACCTGAT 132
Query 79 TGCGTTTAGCCTCTCCCGAAATCAACGGGCAAAGTTGATCCCCTCCCTCTGGGTTAGTAT 138
||||||||| | ||||||||||| |||||||||||||| ||||||| | ||||
Sbjct 133 TGCGTTTAG-C-CTCCCGAAATCTACGGGCAAAGTTGA-----TCCCTCT--G---GTAT 180
Query 139 GGCTGCAAAGGAAGTGGTTTCTGCCTCAACTTTAGAATCTAATATCACTGAGGAGGATCA 198
||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 181 GGCTGAAAAGGAAGTGGTTTCTGCCTCAACTTTAGAATCTAAGATCACTGAGGATCATCA 240
Query 199 TCACCTCTGGAT--G-CGAGCTATGGATTGGAGCCGCTCCTCCGACATCAGTATTCTGCA 255
| || ||||||| | |||| ||||| ||||||||||||| |||||||| ||||| |
Sbjct 241 TGACATCTGGATCCGAGGAGCGATGGAAAAGAGCCGCTCCTCCAACATCAGTGTTCTG-A 299
Query 256 A-GACAGATTCATAGCTGCTGAGGATTCCGCTC----TT-----G-T-TT-CACAAAAGG 302
| || ||||||||||||||||||||||| |||| || | | || |||||||||
Sbjct 300 AGGATAGATTCATAGCTGCTGAGGATTCTGCTCTAGTTTCCAAGGATGTTGCACAAAAGG 359
Query 303 ATGTTGAGATTCTCTTGAGACGAGTGAAAACTTG-TACCGCCTTATTGACTTACCTGAAA 361
|| |||||||||||||||||||||||||||| || ||| || ||||||||||||||||||
Sbjct 360 ATATTGAGATTCTCTTGAGACGAGTGAAAAC-TGCTACAGCTTTATTGACTTACCTGAAA 418
Query 362 TCTAAAGCGACTACTGTGGCTGCTGCCGATTTGGCTAATCTATCACTTGGAACTCACCAG 421
||||||||||| ||||||||||||||||||||||| ||||| ||||||| |||| |||||
Sbjct 419 TCTAAAGCGACAACTGTGGCTGCTGCCGATTTGGCCAATCTTTCACTTGAAACTGACCAG 478
Query 422 CTCCAAGGAT-CCATAGACGAACATGACGGGACTTATGTCACTGAGATGCTTCAGCATGT 480
|||||| ||| | |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 479 CTCCAA-GATACAATAGACGAACATGATGGGACTTATGTCACTGAGATGCTTCAGCATGT 537
Query 481 AGAGACCGTTACAGGCGTCATGGAGTCTCTGGCTAGGCGTGCTATCATCGCCGAATCAGA 540
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 538 AGAGACCGTTACAGGCGTCATGGAGTCTCTGGCTAGGCGTGCTTTTATCGCCGAATCAGA 597
Query 541 AGCCGCAATCGAGAAAGGAAAGGTTGTGCTAAGTCAAGAGGAAATTCAAAGAAAAGTTGG 600
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 598 AGCCGCTATCGAGAAAGGAAAGGTTGTGCTAAGCCAAGAGGAAATTCAAAGAAAGGTTGG 657
Query 601 CCAAATCGAGAACATGTCCCTCAAGTTAGAGGACATGGAAAAGTTTGCTCTTGGGACCAG 660
|||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 658 CCAACTCGAGAACATGTCCGTGAAGTTAGAGGACATGGAAAAGTTTGCTCTTGGGACCAG 717
Query 661 TGGTATTCTCTGTGAAATGCGCCAGAGGGTTGATGATTTGGTCGAAGAGACGTCTAGACA 720
| ||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 718 TAGTATTCTCTGTGAAATGCGGCAGAGGGTTGATGATTTGGTTGAAGAGACCTCTAGACA 777
Query 721 GAAGCAAAGAGCTACGGAAAATGAGCAGGAACTCAGTCGTGTCAGGAGAGACTTTGAGTC 780
||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 778 GAAGCAAAGAGCTACTGAAAATGAGCTGGAACTCAGTCGCGTCAGGAGAGACTTTGAGTC 837
Query 781 TCTTAAATCCTATGTTACAAGTCTCATTAGCGTCAGAGAAACACTCGTCTCATCCGAGAA 840
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 838 TCTTAAATCGTATGTTACAAGTCTCATTAGCGTCAGAGAAACTCTCGTCTCATCCGAGAA 897
Query 841 GCAGTTCCAAACAATCGAGAGGCTTTTTGAACG 873
|||||||||||||||||||||||||||||||||
Sbjct 898 GCAGTTCCAAACAATCGAGAGGCTTTTTGAACG 930
Score = 551 bits (298), Expect = 6e-156
Identities = 333/349 (95%), Gaps = 5/349 (1%)
Strand=Plus/Plus
Query 874 GCTTGTTGCAAAGACAACGCAGTTGGAAAGCGAGAAAGTGCAGAAAGAAGCAGAGGTTCA 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 GCTTGTTGCAAAGACAACGCAGTTGGAAAGCGAGAAAGTGCAGAAAGAAGCAGAGGTTCA 1050
Query 934 GAAACTAATGGAAGAGAATGTTAGACTGACGGCTCTTGTGGACAAGAAAGAGGCACAGCT 993
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1051 GAAACTAATGGAAGAGAATGTAAGACTGACGGCTCTTGTGGATAAGAAAGAGGCACAGCT 1110
Query 994 TCTGGCCATGAATGAGCAGTGCAAAATGATGGCCCTAAGCTCTATATGATGCTCAGAGAT 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1111 TCTGGCCATGAATGAGCAGTGCAAAATGATGGCCCTAAGCTCTATATGATGCTTAGAGAT 1170
Query 1054 GAAAATTGCT--ACTTAATCTTTTCTTCCACGTGTAATATAAAGAAATTCTTATTTGATA 1111
||| |||||| ||||||||||| ||||||| ||||| ||||||||| ||||||||||||
Sbjct 1171 GAATATTGCTCTACTTAATCTTT-CTTCCACTTGTAACATAAAGAAACTCTTATTTGATA 1229
Query 1112 CAACTTCCACGTTTGTTGATATCCTAAAGGCAACAAAATATTGGTCCTGGAAGACTCTGT 1171
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1230 CAACTTCCATGTTTGTTGATATCCTAAAGGCAACAAAATATTTGTCCTGGAAGACTCTGT 1289
Query 1172 ATGTGATTGTACATTCTCAGCAGC-TGAAATTGCGTTATGGTTTGGCTT 1219
||||||||||||||||| |||| | |||||||||||||| |||||||||
Sbjct 1290 ATGTGATTGTACATTCTTAGCA-CATGAAATTGCGTTATTGTTTGGCTT 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59889250185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5