BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496982 Length=1219 Score E Sequences producing significant alignments: (Bits) Value AT5G66250.4 | Symbols: | kinectin-related | chr5:26468535-2647... 1099 0.0 > AT5G66250.4 | Symbols: | kinectin-related | chr5:26468535-26470554 FORWARD LENGTH=1337 Length=1337 Score = 1099 bits (595), Expect = 0.0 Identities = 787/873 (90%), Gaps = 39/873 (4%) Strand=Plus/Plus Query 19 CCAAGTCAACCCGACCCGACTGCGGTCTCTTCAGGGTTGATCGATCGGCCGGGACCTGAT 78 ||||||||||||||||||||| || || | || || | | |||||||||||||||||| Sbjct 79 CCAAGTCAACCCGACCCGACTTCGTTCCCATC--GG-T--T-GATCGGCCGGGACCTGAT 132 Query 79 TGCGTTTAGCCTCTCCCGAAATCAACGGGCAAAGTTGATCCCCTCCCTCTGGGTTAGTAT 138 ||||||||| | ||||||||||| |||||||||||||| ||||||| | |||| Sbjct 133 TGCGTTTAG-C-CTCCCGAAATCTACGGGCAAAGTTGA-----TCCCTCT--G---GTAT 180 Query 139 GGCTGCAAAGGAAGTGGTTTCTGCCTCAACTTTAGAATCTAATATCACTGAGGAGGATCA 198 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 181 GGCTGAAAAGGAAGTGGTTTCTGCCTCAACTTTAGAATCTAAGATCACTGAGGATCATCA 240 Query 199 TCACCTCTGGAT--G-CGAGCTATGGATTGGAGCCGCTCCTCCGACATCAGTATTCTGCA 255 | || ||||||| | |||| ||||| ||||||||||||| |||||||| ||||| | Sbjct 241 TGACATCTGGATCCGAGGAGCGATGGAAAAGAGCCGCTCCTCCAACATCAGTGTTCTG-A 299 Query 256 A-GACAGATTCATAGCTGCTGAGGATTCCGCTC----TT-----G-T-TT-CACAAAAGG 302 | || ||||||||||||||||||||||| |||| || | | || ||||||||| Sbjct 300 AGGATAGATTCATAGCTGCTGAGGATTCTGCTCTAGTTTCCAAGGATGTTGCACAAAAGG 359 Query 303 ATGTTGAGATTCTCTTGAGACGAGTGAAAACTTG-TACCGCCTTATTGACTTACCTGAAA 361 || |||||||||||||||||||||||||||| || ||| || |||||||||||||||||| Sbjct 360 ATATTGAGATTCTCTTGAGACGAGTGAAAAC-TGCTACAGCTTTATTGACTTACCTGAAA 418 Query 362 TCTAAAGCGACTACTGTGGCTGCTGCCGATTTGGCTAATCTATCACTTGGAACTCACCAG 421 ||||||||||| ||||||||||||||||||||||| ||||| ||||||| |||| ||||| Sbjct 419 TCTAAAGCGACAACTGTGGCTGCTGCCGATTTGGCCAATCTTTCACTTGAAACTGACCAG 478 Query 422 CTCCAAGGAT-CCATAGACGAACATGACGGGACTTATGTCACTGAGATGCTTCAGCATGT 480 |||||| ||| | |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 479 CTCCAA-GATACAATAGACGAACATGATGGGACTTATGTCACTGAGATGCTTCAGCATGT 537 Query 481 AGAGACCGTTACAGGCGTCATGGAGTCTCTGGCTAGGCGTGCTATCATCGCCGAATCAGA 540 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 538 AGAGACCGTTACAGGCGTCATGGAGTCTCTGGCTAGGCGTGCTTTTATCGCCGAATCAGA 597 Query 541 AGCCGCAATCGAGAAAGGAAAGGTTGTGCTAAGTCAAGAGGAAATTCAAAGAAAAGTTGG 600 |||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 598 AGCCGCTATCGAGAAAGGAAAGGTTGTGCTAAGCCAAGAGGAAATTCAAAGAAAGGTTGG 657 Query 601 CCAAATCGAGAACATGTCCCTCAAGTTAGAGGACATGGAAAAGTTTGCTCTTGGGACCAG 660 |||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 658 CCAACTCGAGAACATGTCCGTGAAGTTAGAGGACATGGAAAAGTTTGCTCTTGGGACCAG 717 Query 661 TGGTATTCTCTGTGAAATGCGCCAGAGGGTTGATGATTTGGTCGAAGAGACGTCTAGACA 720 | ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| Sbjct 718 TAGTATTCTCTGTGAAATGCGGCAGAGGGTTGATGATTTGGTTGAAGAGACCTCTAGACA 777 Query 721 GAAGCAAAGAGCTACGGAAAATGAGCAGGAACTCAGTCGTGTCAGGAGAGACTTTGAGTC 780 ||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||| Sbjct 778 GAAGCAAAGAGCTACTGAAAATGAGCTGGAACTCAGTCGCGTCAGGAGAGACTTTGAGTC 837 Query 781 TCTTAAATCCTATGTTACAAGTCTCATTAGCGTCAGAGAAACACTCGTCTCATCCGAGAA 840 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 838 TCTTAAATCGTATGTTACAAGTCTCATTAGCGTCAGAGAAACTCTCGTCTCATCCGAGAA 897 Query 841 GCAGTTCCAAACAATCGAGAGGCTTTTTGAACG 873 ||||||||||||||||||||||||||||||||| Sbjct 898 GCAGTTCCAAACAATCGAGAGGCTTTTTGAACG 930 Score = 551 bits (298), Expect = 6e-156 Identities = 333/349 (95%), Gaps = 5/349 (1%) Strand=Plus/Plus Query 874 GCTTGTTGCAAAGACAACGCAGTTGGAAAGCGAGAAAGTGCAGAAAGAAGCAGAGGTTCA 933 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 991 GCTTGTTGCAAAGACAACGCAGTTGGAAAGCGAGAAAGTGCAGAAAGAAGCAGAGGTTCA 1050 Query 934 GAAACTAATGGAAGAGAATGTTAGACTGACGGCTCTTGTGGACAAGAAAGAGGCACAGCT 993 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 1051 GAAACTAATGGAAGAGAATGTAAGACTGACGGCTCTTGTGGATAAGAAAGAGGCACAGCT 1110 Query 994 TCTGGCCATGAATGAGCAGTGCAAAATGATGGCCCTAAGCTCTATATGATGCTCAGAGAT 1053 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1111 TCTGGCCATGAATGAGCAGTGCAAAATGATGGCCCTAAGCTCTATATGATGCTTAGAGAT 1170 Query 1054 GAAAATTGCT--ACTTAATCTTTTCTTCCACGTGTAATATAAAGAAATTCTTATTTGATA 1111 ||| |||||| ||||||||||| ||||||| ||||| ||||||||| |||||||||||| Sbjct 1171 GAATATTGCTCTACTTAATCTTT-CTTCCACTTGTAACATAAAGAAACTCTTATTTGATA 1229 Query 1112 CAACTTCCACGTTTGTTGATATCCTAAAGGCAACAAAATATTGGTCCTGGAAGACTCTGT 1171 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1230 CAACTTCCATGTTTGTTGATATCCTAAAGGCAACAAAATATTTGTCCTGGAAGACTCTGT 1289 Query 1172 ATGTGATTGTACATTCTCAGCAGC-TGAAATTGCGTTATGGTTTGGCTT 1219 ||||||||||||||||| |||| | |||||||||||||| ||||||||| Sbjct 1290 ATGTGATTGTACATTCTTAGCA-CATGAAATTGCGTTATTGTTTGGCTT 1337 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59889250185 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5