BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496986
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66230.1 | Symbols: | Chalcone-flavanone isomerase family p... 856 0.0
> AT5G66230.1 | Symbols: | Chalcone-flavanone isomerase family
protein | chr5:26462585-26464131 FORWARD LENGTH=1367
Length=1367
Score = 856 bits (463), Expect = 0.0
Identities = 590/649 (91%), Gaps = 17/649 (3%)
Strand=Plus/Plus
Query 1 GTAAATCATAATGGAGACACCTTCATCGACAAGAAGAGTCACGAGGTCCCAGACCCGCAA 60
||||||| ||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 110 GTAAATCGTAATGGAGACACCATCATCGACAAGAAGAGTCACGAGATCTCAGACCCGCTG 169
Query 61 TGCCATCACTAATCTCTTATCCTCAAAGAAAGCGGATGA-T--TCCGATAAATGTCAATC 117
||| |||| |||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 170 TGCTATCAATAATCTCTTATCCTCAAAGAAAGCGGATGATTGGTCAGATAAATGTCAATC 229
Query 118 GAAGTCGGTACAAAGAAACGGTGCAAAAGACAGGTCAGCGTTATTTGACATAACGAACGA 177
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 230 GAAGTCGGTACAAAGAAACGGTGCAAAAGACAGGTCTGCGTTGTTTGACATAACCAACGA 289
Query 178 CTCGCCGATCGTAGGTCTGGCGATGCAGACACCATCCTCAGGAGTGGTTGGGAAGAGGAG 237
||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 290 CTCACCGATCGTAGGTCTGGCGATGCAGACACCGTCCTCAGGAGTTGTTGGGAAGAGGA- 348
Query 238 GAATATGAGCAGAATCAACAACACTCCTGGATCTGGTGAGGCTCTTTTGAGAGGCCAAGT 297
| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 349 -AC-ATGAGCAGAATCAATAACACTCCTGGATCTGGTGAGGCTCTCTTGAGAGGCCAAGT 406
Query 298 CAAGACCCTCTTGCAAAAGGTTGAAGAAGAAGCAGATCTCACCAAGATTTC-TATGGAAT 356
|||||| |||||||| |||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 407 CAAGACTCTCTTGCAGAAGGTTGAGGAAGAAGCAGATCTCACCAAGATTTCGT-TGGAAT 465
Query 357 CTCGTCCCTTCATCCATCTCGTTACTTCTCCCATGGGACTTCTCGCCCCAACTCCGGCCA 416
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 466 CTCGTCCTTTCATCCATCTCGTTACTTCTCCCATGGGTCTTCTCGCCCCAACTCCGGCCA 525
Query 417 ACACCCCCCAAGTTCTCGATTTCTCTGACGAAGTGCAGATTGTGATCACTTCTCCGGTTG 476
|||||||||||||||| | |||||| |||||||||||| ||||||||||||||||||| |
Sbjct 526 ACACCCCCCAAGTTCTTGGTTTCTCAGACGAAGTGCAGGTTGTGATCACTTCTCCGGTAG 585
Query 477 TTGCAGGACAATTCAGAGCAGCATCTCAGGTGGTGGAAAGCGACACGTTTGGTGACAAGG 536
|||||||||||||||||||| | |||||||||||||||||| ||| ||||| ||| || |
Sbjct 586 TTGCAGGACAATTCAGAGCACCGTCTCAGGTGGTGGAAAGCAACATGTTTGATGAGAAAG 645
Query 537 AAGAGAGCCTG-A---AGAG-----CCCGAGCATAACTCGGTCATTGCTGCTGGACTTTA 587
|||| ||| || | |||| ||||||||| |||||||||||||| ||||||||||
Sbjct 646 AAGAAAGCTTGGAGTTAGAGAAGAGCCCGAGCATTACTCGGTCATTGCTTCTGGACTTTA 705
Query 588 GTGATAAATCAGAATTATGGGAGAGCTCAGGCTGCTCCTCTGGGGTGAC 636
|||||||||||||||||||||||||||||| |||||| |||| ||||||
Sbjct 706 GTGATAAATCAGAATTATGGGAGAGCTCAGACTGCTCATCTGTGGTGAC 754
Score = 324 bits (175), Expect = 1e-87
Identities = 212/230 (92%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 665 tacgacgaggaagaggaggaagaagagggagggaTTGTGGATGGGTTGTGTGAGGGAATG 724
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 TACGACGAGGAAGAGGAGGAAGAAGAGGGAGGGATTGTGGATGGGTTGTGTGAGGGAATT 941
Query 725 AGGAAGATTAGCGTAGAGACTGAATTTGCAGGGAAACACATTCGATTTGAGTACGACAGT 784
|||||||| |||||||||||||| |||||||||||||||| | |||||| ||| ||||||
Sbjct 942 AGGAAGATGAGCGTAGAGACTGACTTTGCAGGGAAACACACTAGATTTGTGTATGACAGT 1001
Query 785 GAAGATGAAGAGATTGTGGAGGCCAAAGAGCAATCTCCAGGAGTGCTGCGTTTGGAAGGT 844
||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||
Sbjct 1002 GAAGATGAAGAGATTGTGGAGGCCAAAGATCAATCTCCAGGAGTGTTGCGTTTGAAAGGC 1061
Query 845 TTTCCTACACCAACTGGAAAACATGTCCGATTT-CTTGGCGATGAATGAG 893
||||||||||| || |||||||||||| ||||| | || ||||||||||
Sbjct 1062 TTTCCTACACCGACAGGAAAACATGTCAGATTTGCC-GGTGATGAATGAG 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5