BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496989
Length=2040
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66210.2 | Symbols: CPK28 | calcium-dependent protein kinase... 2752 0.0
> AT5G66210.2 | Symbols: CPK28 | calcium-dependent protein kinase
28 | chr5:26456291-26459631 REVERSE LENGTH=1941
Length=1941
Score = 2752 bits (1490), Expect = 0.0
Identities = 1763/1888 (93%), Gaps = 45/1888 (2%)
Strand=Plus/Plus
Query 173 GAGCCATGGGTGTCTGTTTCTCCGCCATCAGAGTCACTGGTGCCAGCAGCAGTAGACCAA 232
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||
Sbjct 78 GAGCCATGGGTGTCTGTTTCTCCGCCATTAGAGTCACTGGTGCTAGCAGCAGTAGACGAA 137
Query 233 GCAGTCAGACCAACAACCCCAAATCCAAGGCTGCTCCTTCTCCCATCGAT----A----- 283
|||||||| | |||||||||||||||||||| ||||||||||| |
Sbjct 138 GCAGTCAG-------A--CCAAATCCAAGGCTGCTCCTACTCCCATCGATACCAAGGCCT 188
Query 284 --A-CAAGCGCCGAACCGGCTCCATCCCCTGCGGCAAGCGTACTGATTTTGGTTACGCCA 340
| ||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||
Sbjct 189 CTACCAAACGCCGAACCGGCTCCATCCCCTGCGGCAAGCGTACCGATTTTGGCTACTCCA 248
Query 341 AAGACTTCCACGACCACTACACCATCGGCAAATTGCTCGGCCATGGTCAATTCGGCTACA 400
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 249 AAGACTTCCACGATCACTACACCATCGGCAAGTTGCTCGGCCATGGTCAATTCGGCTACA 308
Query 401 CCTACGTCGCCATCCACAAACCCAATGGAGATCGCGTCGCCGTTAAGAGACTCGATAAGA 460
|||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||
Sbjct 309 CCTACGTCGCCATCCACAGACCCAATGGAGATCGCGTCGCCGTCAAAAGACTCGATAAGT 368
Query 461 CTAAGATGGTTCTTCCTATTGCGGTTGAGGATGTCAAGCGTGAGGTTCAGATTCTTATAG 520
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 369 CTAAGATGGTTCTTCCTATTGCTGTTGAGGATGTCAAGCGTGAGGTTCAGATTCTTATTG 428
Query 521 CTCTTTCTGGCCACGAGAATGTTGTTCAGTTTTACAATGCCTTTGAGGATGACGATTACG 580
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 429 CTCTCTCTGGCCACGAGAATGTTGTTCAGTTTCACAATGCCTTTGAGGATGACGATTACG 488
Query 581 TCTATATTGTTATGGAGTTGTGCGAAGGAGGCGAATTGCTGGATAGGATTTTATCCAAGA 640
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 489 TCTATATTGTTATGGAGTTGTGCGAAGGAGGCGAATTGCTGGATAGGATATTATCCAAGA 548
Query 641 AAGGTAATCGATACTCCGAGAAAGATGCAGCCGTTGTCGTTAGGCAGATGCTCAAAGTCG 700
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 549 AAGGTAATCGGTACTCCGAGAAAGATGCAGCCGTTGTCGTTAGGCAGATGCTCAAAGTTG 608
Query 701 CAGGAGAATGCCATCTTCATGGTCTTGTACATAGAGATATGAAACCAGAGAACTTTTTGT 760
|||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CAGGAGAATGTCATCTACACGGTCTTGTACATAGAGATATGAAACCAGAGAACTTTTTGT 668
Query 761 TCAAATCAGCTCAACTAGATTCGCCTCTAAAGGCTACAGATTTTGGTTTATCGGATTTTA 820
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 669 TCAAATCAGCTCAACTAGATTCGCCTCTAAAGGCTACGGATTTTGGTTTATCGGATTTTA 728
Query 821 TCAAACCAGGGAAAAGGTTCCATGACATTGTTGGTAGCGCCTATTATGTTGCTCCCGAAG 880
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 729 TCAAACCAGGGAAAAGGTTCCATGACATTGTTGGTAGCGCCTATTATGTGGCTCCTGAGG 788
Query 881 TACTAAAGCGCAGATCAGGGCCTGAATCAGATGTGTGGAGCATTGGTGTGATTACGTATA 940
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 789 TATTAAAGCGCAGATCAGGGCCTGAATCAGATGTATGGAGCATTGGTGTGATTACGTATA 848
Query 941 TATTACTTTGTGGGAGGCGGCCTTTTTGGGATAGGACAGAAGATGGTATATTTAAGGAGG 1000
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 849 TATTACTTTGTGGGAGGCGGCCTTTTTGGGATAGAACTGAAGATGGTATATTTAAAGAGG 908
Query 1001 TTTTAAGAAAGAAACCTGACTTCAGCCGTAAACCATGGTTAACTATAAGCGACAGCGCCA 1060
|||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||
Sbjct 909 TTTTAAGAAATAAACCTGACTTCAGCCGTAAACCTTGGGCAACTATAAGTGACAGCGCCA 968
Query 1061 AAGATTTTGTGAAAAAGCTACTTGTAAAAGACCCACGAGCACGGCTAACTGCTGCACAAG 1120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 AAGATTTTGTGAAAAAGTTACTTGTAAAAGACCCACGAGCACGGCTAACTGCTGCACAAG 1028
Query 1121 CCCTATCACATGCGTGGGTTAGAGAAGGTGGGAATGCTACTGATATCCCTGTCGATATTT 1180
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1029 CACTATCACATGCGTGGGTTAGAGAAGGCGGGAATGCTACTGATATCCCTGTCGACATTT 1088
Query 1181 CAGTTCTTAACAACTTACGTCAATTTGTGAGATACAGCCGTCTAAAGCAATTTGCTTTAA 1240
||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 CAGTTCTGAACAACTTAAGACAATTTGTGAGATACAGCCGTCTAAAGCAATTTGCTTTAA 1148
Query 1241 GGGCGCTTGCTAGCACACTTGACGAGGCAGAGATCTCTGACCTCAGAGATCAATTTGATG 1300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 GGGCGCTTGCTAGCACACTTGACGAGGCAGAGATCTCTGACCTCAGAGATCAATTTGATG 1208
Query 1301 CGATTGATGTGGATAAAAATGGTGTCATCAGTCTTGAAGAGATGAGACAGGCACTTGCCA 1360
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1209 CGATTGATGTGGATAAAAATGGCGTCATTAGTCTTGAAGAGATGAGACAGGCACTTGCCA 1268
Query 1361 AAGATCTTCCTTGGAAACTGAAGGATTCACGAGTTGCTGAGATCCTTGAAGCGATTGATA 1420
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1269 AAGATCTTCCTTGGAAACTGAAAGACTCACGAGTTGCTGAGATCCTTGAAGCGATTGATA 1328
Query 1421 GCAACACTGATGGGTTAGTGGACTTCACAGAGTTTGTAGCAGCAGCTCTACATGTTCATC 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 GCAACACTGATGGGTTAGTGGACTTCACAGAGTTTGTAGCAGCAGCTCTACATGTTCATC 1388
Query 1481 AACTGGAAGAACATGATTCAGAGAAATGGCAGCTAAGGTCAAGAGCAGCTTTTGAGAAAT 1540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 AACTAGAAGAACATGATTCAGAGAAATGGCAGCTAAGGTCAAGAGCAGCTTTTGAGAAAT 1448
Query 1541 TTGACATTGACAAAGACGGGTACATAACGCCTGAAGAACTTCGAATGCACACGGGGTTAA 1600
| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1449 TCGACCTAGACAAAGACGGGTACATAACGCCTGAGGAACTTCGAATGCACACGGGGTTAA 1508
Query 1601 GAGGATCAATAGATCCACTGCTGGATGAAGCAGACATTGACAGAGATGGGAAAATAAGCC 1660
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1509 GAGGATCAATAGATCCACTGCTGGATGAAGCAGACATAGACAGAGATGGGAAAATAAGCC 1568
Query 1661 TGCATGAGTTCAGGAGACTTCTAAGAACAGCGAGCATAAGTTCACAGAGAGCTCCAAGTC 1720
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1569 TGCATGAGTTCAGGAGACTTCTAAGAACAGCGAGCATAAGTTCACAGAGAGCACCAAGCC 1628
Query 1721 CT-CAAGGCCACAGGAATCCTCGGTAGTATATACTAGAAGAGGTTGATAAGTAAGTAAGT 1779
|| || || |||||||||| ||| ||||||||||||||||||| |||||||||||||| |
Sbjct 1629 CTGCA-GGTCACAGGAATCTTCGATAGTATATACTAGAAGAGGATGATAAGTAAGTAA-T 1686
Query 1780 ACTTAGGTTGTTTAAGG-GCAGCCAAACCAAAGAGAGAAAGTGGAGTGAGAACTGTCCAT 1838
|||| |||||||||||| ||||| |||| ||||||||||||||||||||||| | ||||
Sbjct 1687 ACTTTGGTTGTTTAAGGCGCAGCAAAAC-AAAGAGAGAAAGTGGAGTGAGAA-TC-CCAT 1743
Query 1839 TGATGAAATACGAGAGAGCTCTTCTTCT-CTACTAGTAGATGGAGGAGGCCACGTGGAAT 1897
|||||||||| |||||||||||| | | ||||| | || | |||| ||||||| ||
Sbjct 1744 TGATGAAATATGAGAGAGCTCTTAAGGTGC-ACTAG-A--TGCAAGAGGACACGTGGCAT 1799
Query 1898 TCTCTGAGTGGGGGCCGAATCCAAATTTAA-T----AATGGTTGGGCACCACCAAAGAAA 1952
|| |||| |||||| | ||||||| ||||| | ||||||||||||||| |||||||
Sbjct 1800 TCCCTGAATGGGGGACAAATCCAATTTTAAATTTTTAATGGTTGGGCACCA--AAAGAAA 1857
Query 1953 CATAGAGAGCCAGCTGTAATTTCGATTCTACCATATATATTTGGTCTGTTTCCATATTTC 2012
|||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||
Sbjct 1858 CATAGAGAGCCAGCTGTAATTTCGATTCTATCATATAT-TTTG-TCTGTTTCCATTTTTC 1915
Query 2013 TTAGTATAATATTCGTTTTGAGAGCACC 2040
||| || | |||||||||||||||||||
Sbjct 1916 TTA-TA-A-TATTCGTTTTGAGAGCACC 1940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101103897630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5