BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496993
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66190.1 | Symbols: ATLFNR1, FNR1 | ferredoxin-NADP(+)-oxido... 2255 0.0
AT5G66180.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 261 1e-68
> AT5G66190.1 | Symbols: ATLFNR1, FNR1 | ferredoxin-NADP(+)-oxidoreductase
1 | chr5:26450964-26453199 REVERSE LENGTH=1509
Length=1509
Score = 2255 bits (1221), Expect = 0.0
Identities = 1401/1481 (95%), Gaps = 39/1481 (3%)
Strand=Plus/Plus
Query 1 AATAACTTATCCTGTGTAACACTTGGCCTCGCATTGCCCTTCACACAATCCACACACATC 60
||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 4 AATAACTTATCCTCTCTAACACTTGGCCTCACATTGCCCTTCACACAATCCACACACATC 63
Query 61 CAATCACAACCTCATCATATATCTCCCGCTAA-C-CTTTTTC--T--TC------ttttt 108
|||||||||||||||||||||||||||||||| | |||||| | || |||||
Sbjct 64 CAATCACAACCTCATCATATATCTCCCGCTAATCTTTTTTTCTTTGATCTTTTTTTTTTT 123
Query 109 --tt-tt-tttttttGACTTTGATC-GCCA-C----CA----------GTTCTTCTGATC 148
|| || ||||||||||||||||| ||| | || |||||||||||
Sbjct 124 GCTTATTATTTTTTTGACTTTGATCTCCCATCAGTTCATCTTCTTCTTCTTCTTCTGATC 183
Query 149 AACCATGGCTGCTGCTATAAGTGCTGCAGTCTCTTTACCTTCCTCCAAGTCATCCTCTCT 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 AACCATGGCTGCTGCTATAAGTGCTGCAGTCTCTTTACCTTCCTCCAAGTCATCCTCTCT 243
Query 209 CCCCACCAAAACCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGAGCACACTGTG 268
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 244 CCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGAGCACAGTGTG 303
Query 269 TTACAGGAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACAGATACTACCGAGGCACC 328
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TTAC---AGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACAGATACTACCGAGGCACC 360
Query 329 ACCAGTTAAAGTAGTCAAGGAGTCTAAGAAACAGGAAGAAGGGATTGTTGTCAACAAATT 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACCAGTTAAAGTAGTCAAGGAGTCTAAGAAACAGGAAGAAGGGATTGTTGTCAACAAATT 420
Query 389 CAAACCTAAGAACCCTTACACTGGTCGCTGCCTCTTGAACACCAAGATCACCGGCGATGA 448
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 421 CAAACCTAAGAACCCTTACACTGGTCGCTGCCTTTTGAACACCAAGATCACCGGTGATGA 480
Query 449 CGCTCCCGGTGAGACCTGGCACATTGTCTTCACCACCCAAGGTGAGATTCCGTATAGAGA 508
||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 481 CGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGGTGAGGTTCCGTATAGAGA 540
Query 509 AGGGCAATCGATCGGAGTGATTCCTGAGGGAATTGACAAGAACGGGAAGCCGCACAAGCT 568
||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 541 AGGACAATCGATAGGAGTGATTCCAGAGGGAATAGACAAGAACGGGAAGCCGCACAAGCT 600
Query 569 CAGGCTTTACTCTATCGCCAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCGTTTC 628
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CAGGCTTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCGTTTC 660
Query 629 TCTCTGTGTCAAGAGACTAGTTTACACAAATGATAGCGGAGAGATTGTTAAGGGGGTCTG 688
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 661 TCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATTGTTAAGGGGGTCTG 720
Query 689 CTCCAACTTCTTGTGTGACTTGAGGCCGGGTGATGAAGCTAAGATCACTGGACCTGTTGG 748
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 CTCCAACTTCTTGTGTGACTTGAAGCCGGGTGATGAAGCTAAGATCACTGGACCTGTTGG 780
Query 749 GAAGGAAATGCTTATGCCAAAAGACCCTAATGCCACCATCATCATGCTTGGAACAGGAAC 808
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 781 CAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGCTTGGAACAGGAAC 840
Query 809 TGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATGTTCTTCGAGGAACACGAGGACTA 868
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 841 TGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTA 900
Query 869 CAAGTTCAATGGTTTGGCCTGGCTCTTCTTGGGTGTACCCACAAGCAGCTCTCTGCTATA 928
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 901 CAAGTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATA 960
Query 929 CAAGGAGGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTTGC 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CAAGGAGGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTTGC 1020
Query 989 GGTGAGCAGAGAACAGACGAACGACAAGGGAGAGAAAATGTACATTCAGACAAGAATGGC 1048
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1021 GGTGAGCAGAGAGCAGACGAACGAGAAGGGAGAGAAAATGTACATTCAGACAAGAATGGC 1080
Query 1049 AGAGTATGCAGAAGAGCTGTGGGAGTTGCTGAAGAAAGACAACACCTTTGTTTACATGTG 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AGAGTATGCAGAAGAGCTGTGGGAGTTGCTGAAGAAAGACAACACCTTTGTTTACATGTG 1140
Query 1109 TGGTCTGAAGGGTATGGAGAAGGGTATCGATGACATTATGGTCTCACTTGCTGCTAAAGA 1168
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1141 TGGTCTTAAGGGTATGGAGAAGGGTATCGATGACATTATGGTCTCGCTTGCTGCTAAAGA 1200
Query 1169 TGGGATCGATTGGTTGGAGTACAAGAAGCAATTGAAGAGGAGTGAGCAGTGGAATGTTGA 1228
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1201 TGGGATCGATTGGTTGGAGTACAAGAAGCAATTGAAGAGGAGTGAACAGTGGAATGTTGA 1260
Query 1229 AGTCTACTAAGGAAGGCTTCTGAGGGAGTTATTATATAATGTAGATAAAAAGCT---GAT 1285
||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1261 AGTCTACTAAGGAAG-CTTCTGAGGGAGTAATTATATAATGTAGATAAAAAGCTTCTGAT 1319
Query 1286 GCATTGTGAAATCTTCATTTATGCTTCTTTCTTCTTTCTCAAGGATTTTCCATCAAAACA 1345
|||||||||||||||||| | ||||||||| ||||||||||||||||||| |||||||||
Sbjct 1320 GCATTGTGAAATCTTCATATCTGCTTCTTTTTTCTTTCTCAAGGATTTTCAATCAAAACA 1379
Query 1346 TTCAAAAGAGAGCATCAATACCATCAAACTACTCTTTCTCACTTGTTGTTCATGTTATAT 1405
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1380 TTCAAAAGAGAGCATCAATACCACCAAACTACTCTTTCTCACTTGTTGTTCATGTTATAT 1439
Query 1406 TTCTTGCAACAATATAGTGAGTTTTGTGATTTATGTTTTTC 1446
||||||||||||||||||||||||||||| ||||||||||
Sbjct 1440 TTCTTGCAACAATATAGTGAGTTTTGTGAAATATGTTTTTC 1480
> AT5G66180.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:26448938-26451154
FORWARD LENGTH=1437
Length=1437
Score = 261 bits (141), Expect = 1e-68
Identities = 155/162 (96%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 1285 TGCATTGTGAAATCTTCATTTATGCTTCTTTCTTCTTTCTCAAGGATTTTCCATCAAAAC 1344
||||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||||||
Sbjct 1437 TGCATTGTGAAATCTTCATATCTGCTTCTTTTTTCTTTCTCAAGGATTTTCAATCAAAAC 1378
Query 1345 ATTCAAAAGAGAGCATCAATACCATCAAACTACTCTTTCTCACTTGTTGTTCATGTTATA 1404
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1377 ATTCAAAAGAGAGCATCAATACCACCAAACTACTCTTTCTCACTTGTTGTTCATGTTATA 1318
Query 1405 TTTCTTGCAACAATATAGTGAGTTTTGTGATTTATGTTTTTC 1446
|||||||||||||||||||||||||||||| ||||||||||
Sbjct 1317 TTTCTTGCAACAATATAGTGAGTTTTGTGAAATATGTTTTTC 1276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71284773900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5