BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497000
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66160.1 | Symbols: ATRMR1, RMR1 | receptor homology region ... 1762 0.0
> AT5G66160.1 | Symbols: ATRMR1, RMR1 | receptor homology region
transmembrane domain ring H2 motif protein 1 | chr5:26445086-26447433
FORWARD LENGTH=1600
Length=1600
Score = 1762 bits (954), Expect = 0.0
Identities = 1139/1223 (93%), Gaps = 33/1223 (3%)
Strand=Plus/Plus
Query 1 GGTGAAGAAACCAATGCATTTCGGCGACCGCCGGAAACTGAAAAGCCATCGATCGACCGA 60
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 33 GGTGAAGAAACCAATGCATTTCGGCGACAGCCTGAAACTGAAAAGCCATCGATCGACCGA 92
Query 61 GAAAGCGAAAAGAGAGAGAGATGAGACTCGTCGTCTCAAGCTGTCTACTAGTTGCAGCTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 GAAAGCGAAAAGAGAGAGAGATGAGACTCGTCGTCTCAAGCTGTCTACTAGTTGCAGCTC 152
Query 121 CTTTTCTCTCTTCACTGTTACAAGTTTCACTCGCCACTGTTGTCCTCAATTCCATCTCCG 180
|||||||||| || ||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 153 CTTTTCTCTCCTCTCTGTTACGAGTCTCACTCGCCACTGTTGTCCTCAATTCCATCTCCG 212
Query 181 CCTCTTTTGCCGATCTCCCTGCTAAATTTGACGGCTCCGTAACCAAAAACGGAATCTGTG 240
||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 213 CCTCTTTTGCCGATCTCCCAGCCAAATTTGACGGCTCCGTGACCAAAAACGGAATCTGTG 272
Query 241 GAGCTCTGTACGTCGCAGATCCTCTCGACGGTTGCTCACCGCTGCTCCACGCCGCCGCAT 300
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 273 GAGCTCTATACGTCGCAGATCCTCTCGACGGTTGCTCACCGCTTCTCCACGCCGCCGCAT 332
Query 301 CCAACTGGACACAACAGAGAACCACTAAGTTCGCTTTGATAATCCGAGGCGAATGTTCTT 360
|||||||||| ||||| ||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 333 CCAACTGGACGCAACACAGAACTACTAAGTTCGCTTTGATAATCAGAGGCGAATGTTCTT 392
Query 361 TTGAGGATAAGCTCCTCAATGCACAGAAGTCAGGTTTTCAAGCTGTGATTGTCTATGACA 420
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 393 TTGAGGATAAGCTGCTCAATGCCCAGAACTCAGGTTTTCAAGCTGTGATTGTCTATGACA 452
Query 421 ACATTGACAACGAAGATCTCATCGTTATGAAGGTGAACCCTCAGGACATTACGGTTGATG 480
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 453 ACATTGACAACGAAGATCTCATCGTCATGAAGGTGAACCCTCAGGACATTACAGTTGATG 512
Query 481 CAGTCTTCGTTTCGAATGTCGCCGGTGGGATTTTGAGAAAGTACGCGAGAGGCCGAGAGG 540
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 513 CAGTCTTCGTTTCAAATGTCGCCGGTGAGATTTTGAGAAAGTACGCGAGAGGCCGAGATG 572
Query 541 GTGAATGCTGCCTTTATCCGCCA-ACCAAAGGGAGCGCTTGGACTGTGTTGGCCATCTCA 599
|||||||||||||| |||||||| || | ||||||||||||||||||||||||||||||
Sbjct 573 GTGAATGCTGCCTTAATCCGCCAGAC-AGAGGGAGCGCTTGGACTGTGTTGGCCATCTCC 631
Query 600 TTCTTCTCTCTCCTTCTCATTGTCACTTTCCTGTTGATTGCCTTCTTTGCACCCAGACAC 659
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 632 TTCTTCTCTCTCCTTCTTATAGTCACTTTCCTGTTGATTGCCTTCTTTGCACCCAGACAC 691
Query 660 TGGACCCAATGGCGAGGGAGGCACAACAGGACCATCAGGTTAGATGCAAAGCTCGTCCAC 719
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 692 TGGACCCAATGGCGAGGGAGGCACACCAGGACCATCAGGTTAGATGCAAAGCTCGTCCAC 751
Query 720 ACTCTCCCCTGCTTCACCTTCACTGATTCTGCTCACCACAAGGCCGGAGAAACATGTGCT 779
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 752 ACACTCCCCTGCTTCACCTTCACTGATTCTGCTCACCACAAGGCCGGGGAAACATGTGCT 811
Query 780 ATATGTCTCGAGGATTATAGATTTGGAGAAAGCCTCAGACTTCTCCCCTGCCAACATGCT 839
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 ATATGTCTCGAGGATTACAGATTTGGAGAAAGCCTCAGACTTCTCCCCTGCCAACATGCT 871
Query 840 TTTCACTTGAGTTGCATCGACTCTTGGTTGACAAAATGGGGTACATCTTGCCCAGTGTGC 899
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 872 TTTCACTTGAATTGCATCGACTCTTGGTTGACAAAATGGGGTACATCTTGCCCTGTGTGC 931
Query 900 AAGCATGACATAAGAACCGAGACTATGTCTTCTGAGGTACATAAACGAGAGAGTCTGAGA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 932 AAGCATGACATAAGAACCGAGACTATGTCTTCTGAGGTACATAAACGAGAGAGTCCGAGA 991
Query 960 ACAGATACAAGTA-GA-T---TTA-CCTTTGCTCAATCCAGTCAAAGCCATTAGA-T-A- 1010
||||||||||||| || | || ||||||| |||||||||||||||| ||||| | |
Sbjct 992 ACAGATACAAGTACGAGTAGATTTGCCTTTGCCCAATCCAGTCAAAGCCGTTAGAGTTAT 1051
Query 1011 ----G-C--AGC---TGAACACACATATCAGTGCTCGGTTACGTGGATCAGGTCCAGGTT 1060
| | ||| ||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1052 TATCGGCTTAGCAGCTGAACACTCATATCAGTGCTCGGTTACCTGGATCAGGTCCAGGTT 1111
Query 1061 CGCATCCTATATTGAATGGTTAATCATGGTGGGATAAGTATAGGTAAAGTGACTGGATTT 1120
||||| |||||||||||||||||||||||||||||||| ||||||||| ||| |||| |
Sbjct 1112 TGCATCTTATATTGAATGGTTAATCATGGTGGGATAAGTTTAGGTAAAGGGACCGGATCT 1171
Query 1121 GCCATA--G-T-G-G-T---C-G--TTCCCAGATCAATAAGATCTGAGTTGCTTTGCTTG 1168
|||||| | | | | | | | |||||||||||| ||||| ||||||||||||| |
Sbjct 1172 GCCATACTGGTCGTGCTTTGCTGGATTCCCAGATCAAAAAGATATGAGTTGCTTTGCCTC 1231
Query 1169 TTGTTCTTTGCATGTGTACAttt 1191
|| ||||||||||||||||||||
Sbjct 1232 TTTTTCTTTGCATGTGTACATTT 1254
Score = 270 bits (146), Expect = 2e-71
Identities = 225/260 (87%), Gaps = 17/260 (7%)
Strand=Plus/Plus
Query 1249 TAG-AAA-AAATGTTTGATCTAATGAGATTTTCTCTCTCCGATCCAGGCAAATCTTTAAT 1306
||| ||| ||||| ||| |||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1355 TAGAAAACAAATG-TTGGTCTAATCAGATTTTCTCTCTCCGATCCAGGCAAATCTCTAAT 1413
Query 1307 GGTAATCTTGTTGATTTTAAAGGGGATTTCTTTGTCTAAAGTTTGTATAATTTAAATATT 1366
| || |||||||||| || |||||||| |||||||||||||||| | ||||||
Sbjct 1414 GTTA-TCTTGTTGAT---AA------TTTCTTTGCCTAAAGTTTGTATAATATGAATATT 1463
Query 1367 GAATCCGAGTCCCTTACATTGGGGAATGGAATCCATTGAAGGTGGCTTTGATTTTATCTT 1426
||||| || |||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 1464 GAATCTGATTCCCTTACATGGGGGAATGGAATCCATTGAACGTGGCTTTGATTTTGTCTT 1523
Query 1427 GTCCATAGTAATAATAAATAAAAAAGAACACGTCATCCTCATCTCCACCTAACGGTCTCA 1486
||| |||||||||||| |||| |||||||||||||||||||| |||||||| ||||
Sbjct 1524 GTCTGTAGTAATAATAAG-AAAA--GAACACGTCATCCTCATCTCTACCTAACGA-CTCA 1579
Query 1487 TCCAATACGAAGACTCGTTC 1506
|||||||||| |||||||||
Sbjct 1580 TCCAATACGATGACTCGTTC 1599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74296806600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5