BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497001
Length=3144
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66150.1 | Symbols: | Glycosyl hydrolase family 38 protein ... 4848 0.0
> AT5G66150.1 | Symbols: | Glycosyl hydrolase family 38 protein
| chr5:26439013-26444434 REVERSE LENGTH=3144
Length=3144
Score = 4848 bits (2625), Expect = 0.0
Identities = 2977/3148 (95%), Gaps = 20/3148 (1%)
Strand=Plus/Plus
Query 7 AAACCGGGTTTGTCTTTATTGAAAGGAGCACTTTGTGTTATTGTTTCTGTTCTCCGGTTG 66
||||||||| ||||||||||||||||| |||||||||||||||||| | |||| | ||||
Sbjct 7 AAACCGGGTATGTCTTTATTGAAAGGATCACTTTGTGTTATTGTTTTTCTTCTTCTGTTG 66
Query 67 TC---GGTTGAGAGCGTCAAAGGCGGGGGCTACGTGAAGTATGGCACCGAAGCTAAAGTG 123
|| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 67 TCGTTGGTTGAGAGCGTCAAAGGCGGGGGATACGTGAAGTATGGAACCGAAGCTAAAGTG 126
Query 124 GTTCCGGGGAAACTAAATGTTCATCTTGTTCCGCATTCGCATGACGATGTCGGGTGGTTG 183
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 127 GTTCCGGGGAAACTAAATGTTCATCTTGTTCCGCATTCGCATGACGATGTCGGCTGGTTG 186
Query 184 AAAACTGTTGATCAGTACTATGTAGGATCGAACAACAGTATCCAGAACGCTTGTGTGCGG 243
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||| ||
Sbjct 187 AAAACTGTTGATCAGTACTACGTAGGATCTAACAACAGAATCCAGAACGCTTGCGTGAGG 246
Query 244 AACGTGCTAGACTCGGTGGTGGATTCTCTACTTGGCGATCCCAATAGAAAGTTTGTTTTT 303
||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct 247 AACGTCCTAGACTCGGTGGTGGATTCTCTACTTCGTGATCCCAATAGAAAGTTTGTGTTT 306
Query 304 GCGGAAATGGCTTTCTTTACGCGTTGGTGGGAAGAACAAAGCCCCGAGACACAAGAGCAA 363
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 307 GCGGAAATGGCCTTCTTTACGCGTTGGTGGGAAGAACAAAGCCCCGAGAGACAAGAGCAA 366
Query 364 GTGAAGAGACTAGTGAAATCGGGGCAACTAGAGTTTGTAAATGGAGGATGGGCTATGAAT 423
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 367 GTGAGGAGACTAGTGAAATCCGGGCAACTAGAGTTTGTAAATGGAGGATGGGCTATGAAT 426
Query 424 GATGAAGCAACGTGCCATTACATAGATATGATAGACCAAACCACAAAGGGGCATCGGTTT 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GATGAAGCAACGTGCCATTACATAGATATGATAGACCAAACCACAAAGGGGCATCGGTTT 486
Query 484 ATAAAGCAACAGTTCAATACAACTCCACGTGCTGCTTGGCAAATCGACCCCTTTGGTCAT 543
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 487 ATAAAGCAACAGTTCAACACAACTCCACGTGCTGCTTGGCAAATCGATCCCTTTGGTCAT 546
Query 544 TCCTCTGTGCAAGCTTACCTCCTTGGAGCAGAGTTAGGGTTGGATTCTGTGCATTTCGCG 603
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TCCTCTGTTCAAGCTTACCTCCTTGGAGCAGAGTTAGGGTTGGATTCTGTGCATTTCGCG 606
Query 604 AGAATCGATTACCAAGACAGAGAAAAGAGAAAGGCCGAGAAATCACTAGAAGTAATCTGG 663
||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||
Sbjct 607 AGAATCGATTACCAAGACAGAGAAAAGCGAAAGGCCGAGAAATCACTTGAAGTCATCTGG 666
Query 664 AGAGGATCAAAAACATTGGCTTCTTCTTCTCAGATATTCACCAATGTCTTTCTT-GTTCA 722
||||||||||||||| ||| ||||||||||||||||||||||||| |||| ||| |||||
Sbjct 667 AGAGGATCAAAAACACTGGATTCTTCTTCTCAGATATTCACCAATATCTT-CTTTGTTCA 725
Query 723 TTACGGCCCTCCCACTGGCTTTCACTATGAAGTCACCGACGATTACGTCCCCCTCCAGGA 782
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 726 TTACGGCCCTCCCACTGGCTTTCACTATGAAGTCACCGACGATTACGTACCCCTCCAGGA 785
Query 783 CAACCCTCGTTTCGATGCCTATAACATTAAGGAGGCCGTTGATAATTTCGTCAATGCTTC 842
||||||||||||||||| |||||||||||||||||| ||| || ||||||||||||||||
Sbjct 786 CAACCCTCGTTTCGATGGCTATAACATTAAGGAGGCGGTTAATGATTTCGTCAATGCTTC 845
Query 843 TCTGGTTTATGCCAATGTGAGTCGAGGGAACCATGTGATGTGGACAATGGGTGATGATTT 902
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 846 TCTTGTTTATGCTAATGTGAGTCGAGGGAACCATGTGATGTGGACAATGGGCGATGATTT 905
Query 903 TCAGTACCAGTTCGCCGAGTCTTGGTTCAGGCAGATGGACAGACTCATCCATTACGTTAA 962
|||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 906 TCAGTACCAGTTCGCCGAGTCTTGGTTCAGACAGATGGACAGACTTATCCATTATGTTAA 965
Query 963 CAAGGATGGCCGTGTCAACGCCTTGTACTCCACACCATCTCTCTATGTTGATGCCAAGAA 1022
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 CAAGGATGGCCGTGTGAACGCCTTGTACTCCACACCATCTCTCTATGTTGATGCCAAGAA 1025
Query 1023 TAATGCCAATGTTACTTGGCCTCTCAAGACTGGTGATTTTTTCCCATATGCGGATCGGGC 1082
| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1026 TGTTGCCAATGTTACTTGGCCTCTCAAGACTCATGACTTTTTCCCATATGCGGATCGGGC 1085
Query 1083 ATACGCTTACTGGACTGGCTACTTCACCAGCCGTCCTGCTCTTAAACGTTATGTTCGGGC 1142
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1086 ATACGCTTACTGGACTGGCTACTTCACCAGCCGTCCTGCTCTTAAACGATATGTTCGGGC 1145
Query 1143 TCTTAGCGGATACTACATGGCTGCAAGGCAACTTGAATTTCGGGTAGGCAAGAAATCTGG 1202
||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 1146 TCTTAGCGGATACTACATGGCTGCAAGGCAACTTGAATTTCTGGTGGGCAAGAACTCTGG 1205
Query 1203 AGGACCAAATACTTGCAGTCTTGGAGATGCTTTAGCGATAGCGCAGCACCACGATGCTGT 1262
||| ||||| |||| ||||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct 1206 AGGTCCAAACACTTACAGTCTTGGGGATGCTTTAGGGATAGCGCAGCACCATGATGCTGT 1265
Query 1263 CACTGGAACTGCCAAGCAGCATGTAACAAATGATTACATGAAACGCCTTGCTGTTGGTGC 1322
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1266 CACTGGAACTGCCAAGCAGCATGTAACAAATGATTACATGAAACGCCTTGCTCTTGGTGC 1325
Query 1323 TTCTGAGGCAGAAGCTTTGGTGAATGCTGCGCTGGCATGCCTATTGAACAAGGCACCAAA 1382
|||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||||||
Sbjct 1326 TTCTGAGGCAGAAGCTGTGGTGAATTCTGCGCTGGCATGCCTAATGAACAAAGCACCAAA 1385
Query 1383 AGGTGGCTGCACAAAGCCTGCAATAGCATTCAGCCAGCAGTGCTCGTTGATGAATATCAG 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 AGGTGGCTGCACAAAGCCTGCAATAGCATTCAGCCAGCAGTGCTCGTTGATGAATATCAG 1445
Query 1443 CTACTGCCCATCGACAGAAGAAACCATTCCAAGCCAGAAGAGCTTGATTCTGGTGGCGTA 1502
||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1446 CTATTGCCCATCGACAGAAGAAACCCTTCCAGGCCAGAAGAGCTTGATTCTGGTGGCGTA 1505
Query 1503 TAACTCCCTTGGATGGAATCGTACAGAAATCATCAGGATTCCGGTCAATGATGCAGGTCT 1562
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 TAACTCCCTTGGATGGAACCGTACAGAAATCATCAGGATTCCGGTCAATGATGCAGGTCT 1565
Query 1563 AAGCGTGGAGGATTCATCTGGAAAAACCCTTGATGCTCAATACATCCCCATGGATAATGT 1622
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1566 AAGTGTGGAAGATTCATCTGGAAACACCCTTGATGCTCAATACATCCCCATGGATAATGT 1625
Query 1623 CACGAGCAACCTCAGAAGTTTCTATACAAAAGCTTATTTAGGAATATCTTCCCTGCAGAT 1682
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1626 CACGAGCAACCTCAGAAGTTTCTACACAAAAGCTTATTTAGGAATATCTTCCCTGCAGCG 1685
Query 1683 TCCAAAGTATTGGCTCGTGTTTAAGGCAACAG-TACCGCCACTTGGTTGGAACACATTCT 1741
|||||||||||||||||||||||| |||| || | || ||||||||||||||||||||||
Sbjct 1686 TCCAAAGTATTGGCTCGTGTTTAAAGCAA-AGGTGCCACCACTTGGTTGGAACACATTCT 1744
Query 1742 TCATATCTAAAGCATCCGCACAAGGAAGCAGTAATCACACACACTCTTCAGTGATGCTTA 1801
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1745 TCATATCTAAAGCATCCGCACAAGGAAGCAACAATCACAAACACTCTTCAGTGATGCTTA 1804
Query 1802 GTCCGGTGAAAAATACGACTGAAATTGGTCCAGGAAATGTAAAGATGGTGTTTTCTTCAG 1861
||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1805 GTCCGATGAACAATACGACTGAAATTGGTCCAGGAAATCTAAAGATGGTGTTTTCTTCAG 1864
Query 1862 ACTCTGGTCGTCTCGAACGGATATACAACTCCAGAACAGGAGCTGACATAATGGTGGATC 1921
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1865 ACTCTGGTCGTCTCGAACGGATGTACAACTCCAGAACAGGAGCTGACATAAAGGTGGATC 1924
Query 1922 AGAACTATTTCTGGTATGCTTCAAATGGTGGGGACTCAAAAGATCCCCAGGTTTCCGGTG 1981
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||
Sbjct 1925 AGAACTATTTCTGGTATGCTTCAAATGTTGGGGACGCAAAAGATCCCCAGGTTTCTGGTG 1984
Query 1982 CATATATTTTTCGACCTAATGGTTCCTTGGCGTATCCTGTTTCGTCTTCCAAAATATGGA 2041
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1985 CATATATATTTCGACCTAATGGTTCCTTGGCGTATCCTGTTTCGTCGTCCAAAATATGTA 2044
Query 2042 CCGTAACC-GATGCTTTCATTGGCAATGGTAATGCGCAGCCAAAGTTGCAGATTGTGCGA 2100
|||| || | |||||||||||||||||| || | |||| ||||||||||||||||||||
Sbjct 2045 CCGTGACTAG-TGCTTTCATTGGCAATGGAAACGTGCAGTCAAAGTTGCAGATTGTGCGA 2103
Query 2101 GGGCCTTTGATAGATGAGGTGCACCAGCAGTTTAGTCCGTGGGTGGCACAGGTGGTAAGA 2160
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2104 GGGCCTTTAATAGATGAGGTGCACCAGCAGTTTAGTCCTTGGGTGGCACAGGTGGTAAGA 2163
Query 2161 CTGTACAAAGAAAAAGAGCACGCCGAGTTTGAGTTCACTATTGGTCCAATTCCT-TCCGG 2219
|| ||||||||||||||||||||||| |||||||||||||||||||||||| || | ||
Sbjct 2164 CTATACAAAGAAAAAGAGCACGCCGAATTTGAGTTCACTATTGGTCCAATTTCTGTT-GG 2222
Query 2220 TAATGGAGATCTAATAGGGAAAGAGATTATCACGCGAATGGTAACAAATATGACTACGGA 2279
||| ||| |||||| ||| ||||||||||||||||||||||||||| |||||||||| |
Sbjct 2223 TAAGGGACATCTAACAGGAAAAGAGATTATCACGCGAATGGTAACAGATATGACTACAGC 2282
Query 2280 TAAGGCA-TTCTATACTGACTCTAATGGAAGAGACTTTTTGAAACGGGTCCGGGACAACC 2338
||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2283 TAAGG-AGTTCTATACTGACTCTAATGGAAGAGACTTTCTGAAACGGGTCCGGGACAACC 2341
Query 2339 GAACAGACTGGCATCTCCAAGTGAATGAGCCAATAGCAGGAAACTACTATCCGCTTAATC 2398
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2342 GAACAGACTGGCATCTCGAAGTGAATGAGCCAATAGCAGGAAACTACTATCCGCTTAATC 2401
Query 2399 TTGGAATGTAC-TCAAAAGACGAGAAAGCAGAGTTGTCGGTGTTGGTTGATCGGGCTACT 2457
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2402 TTGGAATGTACAT-AAAAGACGAGAAAGCAGAGTTGTCGGTGTTGGTTGATCGGGCTACT 2460
Query 2458 GGGGGTGCTAGTATTAAGAACGGTGAAATAGAGTTGATGCTTCACAGGAGTACGTGCATG 2517
|||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| ||||
Sbjct 2461 GGGGGTGCAAGTATTAAGGACGGTGAAATAGAGTTGATGCTTCACAGGAGAACGTCCATG 2520
Query 2518 GATGACGCGAGAGGAGTAGAGGAGGGCCTTGCAGAAACTGTGTGTGTGAATGGTACCTGC 2577
|||||| |||||||||| |||||| |||||| |||||||||||||||||||| ||||||
Sbjct 2521 GATGACTCGAGAGGAGTGGAGGAGAGCCTTGTAGAAACTGTGTGTGTGAATGACACCTGC 2580
Query 2578 GCAGGATTAACGGTTCGTGGGAATTACTATGTAAGCATAAATAGGGTAGGAGAAGGAGGG 2637
|||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2581 GCAGGATTGACGATTCGTGGGAATTACTATGTAAGCATAAATAAGGTAGGAGAAGGAGGG 2640
Query 2638 CGGTGGAGACGAGAGACTGGGCAGGAATTATACTCTCCTCTTCTAATGGCATTCGCACAC 2697
|||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||
Sbjct 2641 CGGTGGAGACGAGAGACTGGACAGGAAATATACTCACCTCTTCTAATGGCATTCGCACAC 2700
Query 2698 GAGAACAAGGAGAAATGGAAAGCCTCCAATACTGTGAAAGGTTATGCCATGGATCCTCTC 2757
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 2701 GAGAACAAGGAGAAATGGAAAGCCTCAAATACTGTGAAAGGTTATGCCATGGATCATCTC 2760
Query 2758 TACACCTTGCCTCAAAACACTGCTCTCATCACTCTTGAGGGAAT-GGATTTCGGGAACGT 2816
||||||||||||||||||| |||||||||||||||||||| | | |||| ||||||||||
Sbjct 2761 TACACCTTGCCTCAAAACATTGCTCTCATCACTCTTGAGG-AGTTGGATCTCGGGAACGT 2819
Query 2817 CCTTGTTCGCCTGGCTCATCTCTACGAGGCTGGAGAAGACAGTGATTACTCGAAAACCGC 2876
|||| ||||||||||||||||||||||||| |||||||||||||||||||| |||| |||
Sbjct 2820 CCTTCTTCGCCTGGCTCATCTCTACGAGGCGGGAGAAGACAGTGATTACTCTAAAATCGC 2879
Query 2877 TAAAGTTGAGCTGAAGAAGCTGTTTTCCGGGAAAATGATCAAAGAAGTGACGGAAATGAG 2936
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 2880 TAAAGTTGAGTTGAAGAAGTTGTTTTCCGGCAAAATGATCAAAGAAGTGACGGAAATGAG 2939
Query 2937 TTTGTCAGGAAATCaagagaaagcgaagatgaaagagaagatgaagtggaaagtggaggg 2996
|||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2940 TTTGTCAGCAAATCAAGAGAAAGTAAAGATGAAGGAGAAGATGAAGTGGAAAGTGGAGGG 2999
Query 2997 tgaagcggaagaagCTTCTTCCCCGCAAAGAGGGGGAGCCGTTGACAAGTCGACTTTAGT 3056
|||||||||| || |||||||||||| |||||| ||| ||||||||||||||||||||||
Sbjct 3000 TGAAGCGGAACAACCTTCTTCCCCGCTAAGAGGCGGACCCGTTGACAAGTCGACTTTAGT 3059
Query 3057 AGTAGAGCTTGGTCCAATGGAGATTCGTACATTTGTGGTTGAGTTTTCTCAGAAACAACG 3116
||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 3060 AGTAGAGCTTGGTCCCATGGAGATTCGTACATTTGTGGTTCAGTTTTATCAGAAACAACG 3119
Query 3117 AAGAAGAAGAAAGTTGTTTGTGGGATGA 3144
|||||||| | ||||||||||||||||
Sbjct 3120 AAGAAGAA-A--GTTGTTTGTGGGATGA 3144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 156370361331
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5