BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg497005

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G66110.1 | Symbols: HIPP27 | Heavy metal transport/detoxific...   830    0.0  


> AT5G66110.1 | Symbols: HIPP27 | Heavy metal transport/detoxification 
superfamily protein  | chr5:26430202-26430912 FORWARD 
LENGTH=621
Length=621

 Score =  830 bits (449),  Expect = 0.0
 Identities = 477/491 (97%), Gaps = 0/491 (0%)
 Strand=Plus/Plus

Query  1    TCGTAATCGGCGTTAATGGGCTTCCAAGACCTCTGTTACCGGAAACATCACAAAAAGCTC  60
            |||||||||||| |||||||||||| |||| | |||||||||||||||||||||||||| 
Sbjct  29   TCGTAATCGGCGCTAATGGGCTTCCGAGACATTTGTTACCGGAAACATCACAAAAAGCTT  88

Query  61   AAGCAGTTCCAGAGGGTGGAGATAAAAGTGAAGATGGACTGCGAAGGGTGCGAGAGACGG  120
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  89   AAGCAGTTCCAGAAGGTGGAGATAAAAGTGAAGATGGACTGCGAAGGGTGCGAGAGACGG  148

Query  121  GTGAGGAAGTCGGTGGAAGGCATGAAAGGAGTCAGCAAAGTCACCGTCGATCCTAAACAG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GTGAGGAAGTCGGTGGAAGGCATGAAAGGAGTCAGCAAAGTCACCGTCGATCCTAAACAG  208

Query  181  AGCAAACTCACGGTGGAGGGATTCGTCCAACCGAACAAGGTGGTGCATCGGGTGATGCAT  240
            |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  209  AGCAAACTCACGGTCGAGGGATTCGTCCAACCGAGCAAGGTGGTGCATCGGGTGATGCAT  268

Query  241  CGGACGGGGAAGAAGGCGGAGCTGTGGCCTTACGTGCCTTACGAGGTGGTGCCACACCCT  300
            ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  269  CGGACAGGGAAGAAGGCGGAGCTGTGGCCTTACGTACCTTACGAGGTGGTGCCACACCCT  328

Query  301  TACGCACCTGGTGCCTACGACAAGAAGGCCCCTCCTGGTTACGTTCGTAATGCACTCGCC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  329  TACGCACCTGGTGCCTACGACAAGAAGGCCCCTCCTGGTTACGTTCGTAATGCACTCGCC  388

Query  361  GACCCTCTAGTGGCTCCGCTTGCTCGTGCCAGCTCCTTCGAGGTCAAATACACTTCTGCT  420
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  389  GACCCTCTAGTGGCCCCGCTTGCTCGTGCCAGCTCCTTCGAGGTCAAATACACTTCTGCT  448

Query  421  TTCAGCGATGAGAATCCCAACGCTTGTACCATCATGTGATCAATTTATATATATAGTTAA  480
            ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  449  TTCAGCGATGACAATCCCAACGCTTGTACCATCATGTGATCAATTCATATATATAGTTAA  508

Query  481  CTATACATGTG  491
            ||| |||||||
Sbjct  509  CTACACATGTG  519


 Score = 60.2 bits (32),  Expect = 2e-08
 Identities = 48/55 (87%), Gaps = 4/55 (7%)
 Strand=Plus/Plus

Query  491  GTCTGAATG-TTGCATGTA-TGAGTCATCTAAATTCCACTGAAATTAAAAGGGAG  543
            ||||||||| ||| | | | | | |||||||||||||||||||||||||||||||
Sbjct  569  GTCTGAATGTTTGTACG-AGTCA-TCATCTAAATTCCACTGAAATTAAAAGGGAG  621



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26021288146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5