BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497006
Length=1529
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66100.1 | Symbols: | winged-helix DNA-binding transcriptio... 1738 0.0
> AT5G66100.1 | Symbols: | winged-helix DNA-binding transcription
factor family protein | chr5:26427489-26430006 FORWARD LENGTH=1746
Length=1746
Score = 1738 bits (941), Expect = 0.0
Identities = 1402/1605 (87%), Gaps = 109/1605 (7%)
Strand=Plus/Plus
Query 1 CTCTCTCTTCCTCTGTTACAGGATGGCTACGACGGCGAGTAGTGCCGCTAATTCTGCATC 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 132 CTCTCTCTTCCTCTGTTACATGATGGCTACGACGGCGAGTAGTGCCGCTAATTCTGCATC 191
Query 61 TCGCTTCTCCATTGATTCCTCTTTGTCGCGATCAAGTCACAGCGATTCCTCTCCCTGGTT 120
|||||||||||||||||||||| | ||||||||| ||||| |||||||||||||||||||
Sbjct 192 TCGCTTCTCCATTGATTCCTCTATCTCGCGATCACGTCACGGCGATTCCTCTCCCTGGTT 251
Query 121 GATGCCTGCTGCTGATTCCCATGATGATCCGGCTCCTTCCCTCTCCCAGGACGA------ 174
| | ||| | |||||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 252 GTTACCT--T-CTGATTCCCATGATCATCCGACTCTTTCCCTCTCCCAGGACGATCCCTT 308
Query 175 -T---C-CCTTC--T-T-------AACCGGAAATGGCACTTCCGACTACGACAATGCTGA 219
| | ||||| | | ||||||||| | ||||||||||||||||||||||
Sbjct 309 CTCAGCGCCTTCGGTCTCCCCGCCCACCGGAAATAACTCTTCCGACTACGACAATGCTGA 368
Query 220 TCAGAAG---CCTCCTGTCTGGAACATGCCTTCTTCTAATAGCTCC-CC-----C-G--A 267
| ||||| |||||||||||||||||||||||||||||||||||| || | |
Sbjct 369 TAAGAAGCCTCCTCCTGTCTGGAACATGCCTTCTTCTAATAGCTCCTCCGATGTCGGCCC 428
Query 268 TGTCATGGGCGCCGCCGAATCCTGGCCTG------CTC-TTC-G---G-TCTTCTTCCAA 315
||||||||||||||||||||||||||||| ||| ||| | | ||||||||||
Sbjct 429 TGTCATGGGCGCCGCCGAATCCTGGCCTGCTCTCTCTCTTTCTGCTCGCTCTTCTTCCAT 488
Query 316 CAAGTCTCCCTCTTTCGATTCTTCCAAACCTTTAT-CTGATGGatcatcatcatcatcat 374
||||||||||||||| ||| ||||||||||||| | ||||||| |||||| |
Sbjct 489 CAAGTCTCCCTCTTTGGATGCTTCCAAACCTTT-TCCTGATGG---------ATCATCGT 538
Query 375 catcatcatcaCCAATGCCGCCTCCCCAGGCT-GGTGGAACTCC--TTTCAATGCCAATG 431
||||| || | ||||||||||||||| | ||| || |||||||||||
Sbjct 539 CATCA--AT-----A--CCGCCTCCCCAGGCTACTTCCAACACCAGCACCAATGCCAATG 589
Query 432 CTGGCTCAAGTGTTGCTGCTACCTCATCTGAAAACAATACTGTGAATAATAGCCCGAGGA 491
| ||||| |||||| ||||||||||||||||||||| | |||| |||||||||| |||||
Sbjct 590 CAGGCTCGAGTGTTTCTGCTACCTCATCTGAAAACAGTGCTGTTAATAATAGCCAGAGGA 649
Query 492 AACCTTTTAGACGGAATAACAACGCATCATCTTCCAGTAGTCACATCT-CCAACCCAC-C 549
||||||||||||||||||||||| ||||||||||||||| | || | || | | |
Sbjct 650 AACCTTTTAGACGGAATAACAACACATCATCTTCCAGTA--C-CA-GTAGTAA-CGTCTC 704
Query 550 CAGTGCTGCGCCTTTTAACACCAGAGATCAGACTCACA-CTCAAAGGGGTGGT---TCTT 605
|| |||||||||||| |||||||||||||||| ||||| | |||||||||||| ||||
Sbjct 705 CAATGCTGCGCCTTTAAACACCAGAGATCAGAATCACAGC-CAAAGGGGTGGTGGCTCTT 763
Query 606 ATGGCTCAGGGAATTTCCGTAATTCCCAGAGGAATCGCAACAACAGCTCTTACCCTCGTG 665
||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 764 TTGGTTCAGGGAATTTCCGTAATTCTCAGAGGAATCGCAACAGCAGCTCTTACCCTCGTG 823
Query 666 GGGAAGGTCTTCACCATGGAAACAGGCGCAATTATGAG-A--G----C---G-GG-TTTT 713
|||||||||||||||||||||||||||||||||||||| | | | | || ||||
Sbjct 824 GGGAAGGTCTTCACCATGGAAACAGGCGCAATTATGAGCATGGCAACCAAAGCGGCTTTT 883
Query 714 CTCACCGTAACTATAGTGGGAGAGACATGCACTTGCAACCGCAGAGGGGTATTGGGATGA 773
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 884 CTCACCGTAACTATAGTGGGAGAGACATGCACTTGCAACCGCAGAGGGGTGTTGGGATGA 943
Query 774 TGAGACCGCAGATGCTGATGGGGCCACCATCTTTTCCTGCCAGTAGTGCGCAATATATGG 833
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TTAGACCGCAGATGCTGATGGGGCCACCATCTTTTCCTGCCAGTAGTGCGCAATATATGG 1003
Query 834 CAGCGCCTCAATTAGGTTCATATGGTGGCCCCATGATCTACCCAGATTATGCACAGCATG 893
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1004 CAGCGCCTCAATTAGGTTCATATGGTGGCCCCATTATCTACCCAGATTATGCACAGCATG 1063
Query 894 TCTTTATGCCAC--C--TC-C-AGACCCCATGGCTTTAGTTGGACCCTTCCCACCTCTGC 947
|||||||||||| | || | ||| || |||| |||||||||||||||||||| || |
Sbjct 1064 TCTTTATGCCACATCCATCTCCAGATCCGATGGGTTTAGTTGGACCCTTCCCACTTCAAC 1123
Query 948 CCGTGTATTTTCCCAGTTATGATGCCATGTTGTACAATAAGATATTGACACAAGTAGAAT 1007
|| ||||||||| || || ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1124 CCATGTATTTTCGCAATTTTGATGCCATCTTGTACAATAAGATATTGACACAAGTAGAAT 1183
Query 1008 ATTATTTCAGCGCTGATAACCTGAGCAGAGATGAACACTTGCGGGATCAGATGAATGATG 1067
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1184 ATTATTTCAGCGCTGATAACCTGAGCAGAGATGAACATTTACGGGATCAGATGAATGATG 1243
Query 1068 AAGGTTGGGTTCCTGTAAGAGTAATAGCAGGGTTCAGGAGACTTGCAGAACTGACCAACA 1127
|||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 1244 AAGGTTGGGTTCCTGTTAGAGTAATAGCAGCATTCAGGAGACTTGCGGAACTGACCAATA 1303
Query 1128 ACATCCACACTATATTGGAAGCACTAAAAAGTTCAGAAGTCGTGGAAATTAAGGGTGAAA 1187
||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||||||
Sbjct 1304 ACATCCAGACTATATTGGAAGCACTGAGAAGTTCAGAAGTCGTGGAAATTCAGGGTGAAA 1363
Query 1188 CATTGAGGAGGCGAGGAGATTGGGACAAGTATTTATTGCCTCGTGAGCCTTCAAAGTTCG 1247
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1364 CATTAAGGAGGCGAGGAGATTGGGACAAGTATTTATTGCCTCGTGAGCCTTCAAGGTCCG 1423
Query 1248 GTCCAGCAGCGGGGGCTAGCAACAATGCCTCACTGGTGTCTCAACTTGAGAGCATGGCTC 1307
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1424 GTCCAGCTGCGGGGGCTAGCAACAATGCCTCACTGGTGTCTCAAATTGAGAGCATGACTC 1483
Query 1308 TATCagagaggagcagagagggagagtaa-agagatgcgactaagagagaggaagaaaga 1366
|||||||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||
Sbjct 1484 TATCAGAGAGGAGCAGAGAGGGAGTGTAAGAGAGATGCTACTAAGAGAGAGAAAGAAAGA 1543
Query 1367 TGTGTTTGCATGCctctctctctctTTCTTTCCttttttttGTTTTGTCGAGAATCGGAT 1426
|||||||||| |||| ||||||| | |||||||||||| ||||||||||||||| ||||
Sbjct 1544 TGTGTTTGCAAGCCTATCTCTCT-TC-CTTTCCTTTTTTGTGTTTTGTCGAGAATTGGAT 1601
Query 1427 AGGAACTGATTGATAGTCGGTCTCATCATAAGAAAAACAAATAATATGCTGCTCAACttt 1486
| ||||||||||||| || ||||||| | || |||||||| |||||||||||||||||||
Sbjct 1602 ATGAACTGATTGATACTCAGTCTCATAAGAAAAAAAACAA-TAATATGCTGCTCAACTTT 1660
Query 1487 ttttgaacttttctggttttctttaaattttt--GGATAGGAAAC 1529
|||||||||||||||||||| | |||||||| |||||||||||
Sbjct 1661 TTTTGAACTTTTCTGGTTTT-TA-AAATTTTTTTGGATAGGAAAC 1703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75451419135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5