BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg497008 Length=1485 Score E Sequences producing significant alignments: (Bits) Value AT5G66080.1 | Symbols: | Protein phosphatase 2C family protein... 861 0.0 AT5G02760.1 | Symbols: | Protein phosphatase 2C family protein... 132 1e-29 > AT5G66080.1 | Symbols: | Protein phosphatase 2C family protein | chr5:26423419-26425406 REVERSE LENGTH=1691 Length=1691 Score = 861 bits (466), Expect = 0.0 Identities = 520/546 (95%), Gaps = 3/546 (1%) Strand=Plus/Plus Query 718 AGCATAGAGTCTGTGAGGCAGGAAATGCACTCCTTACATCCTGATGACTCCCATATTGTC 777 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 964 AGCATAGAGTCTGTGAGGCAGGAAATGCACTCCTTACACCCTGATGACTCCCATATTGTC 1023 Query 778 CTCTTAAGGCACAATGTCTGGCGTGTTAAGGGCTTTATTCAGGTATCACGATCCATAGGA 837 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1024 GTCTTAAAACACAATGTCTGGCGTGTTAAGGGCATTATTCAGGTATCACGATCCATAGGA 1083 Query 838 GACGTGTATCTTAAGAAAGCGGAGTTCAACAGGGAACCTTTGTACACAAAGTACCGACTG 897 |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| || Sbjct 1084 GACGTGTATCTTAAGAAATCGGAGTTCAACAAGGAACCTTTGTACACAAAGTACCGATTG 1143 Query 898 CGGGAGCCCATGAAAAGACCCATCTTGAGTGGGGAACCATCGATAACCGTGCATGATCTC 957 |||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||| Sbjct 1144 CGGGAGCCAATGAAAAGACCTATCTTGAGTTGGGAACCGTCGATAACCGTGCATGATCTC 1203 Query 958 CAACCAGACGATCAGTTTCTGATATTTGCATCAGACGGACTTTTGGAGCAGCTTAGCAAC 1017 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1204 CAACCAGACGATCAGTTTCTGATATTTGCATCAGACGGACTTTGGGAGCAGCTTAGCAAC 1263 Query 1018 CAAGAGGCTGTTGAAGTCGTTCAGAACCACCCAAGAAACGGGATAGCGAGGAGACTGGTG 1077 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1264 CAAGAGGCTGTTGAAATCGTTCAGAACCACCCAAGAAACGGGATAGCGAGGAGACTGGTG 1323 Query 1078 AAAGCTGCGCTGCAGGAGGCAGCAAAGAAAAGAGAGATGAGATACTT-TGATCTCAACAA 1136 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 1324 AAAGCTGCGCTGCAGGAGGCAGCAAAGAAAAGAGAGATGAGATA-TTCTGATCTCAACAA 1382 Query 1137 GATTGAAAGAGGAGTCAGGAGGCATTTCCACGACGACATCAATGTGATTGTCCTCTTCCT 1196 |||||| ||||||||||||||||||||||| |||||||||| |||| | ||||||||||| Sbjct 1383 GATTGAGAGAGGAGTCAGGAGGCATTTCCATGACGACATCACTGTGGTCGTCCTCTTCCT 1442 Query 1197 GGACACCAATCTGCTCAGCAGAGCCTCCTCTCTCAATACCC-TTCTGTTTCAATTCGTGG 1255 ||||||||||||||||||||||||||||||||| || |||| ||||||||| || ||||| Sbjct 1443 GGACACCAATCTGCTCAGCAGAGCCTCCTCTCTTAAAACCCCTTCTGTTTCTATCCGTGG 1502 Query 1256 TGGTGG 1261 |||||| Sbjct 1503 TGGTGG 1508 Score = 706 bits (382), Expect = 0.0 Identities = 451/484 (93%), Gaps = 5/484 (1%) Strand=Plus/Plus Query 180 ATACGAGATGAGGCCCGATGTTATCCCTTTTCATCAACTTTTTGGCCGCTTGTCTCTGGC 239 ||| |||||||||||||||||||||||||||| ||||||||||| || |||||||||||| Sbjct 359 ATATGAGATGAGGCCCGATGTTATCCCTTTTCTTCAACTTTTTGACCTCTTGTCTCTGGC 418 Query 240 CCTCTGGCCCTCTTCCTCCACTTCCCACTCTTACTCTGATTCCAAAGCCAAACAAGACGG 299 ||||| |||||| ||||||||||| |||| ||||||||||||| |||||||||||| Sbjct 419 CCTCT-----TCTTCCACCACTTCCCACACTTATTCTGATTCCAAAGGCAAACAAGACGG 473 Query 300 CCTTCTCTGGTACAAAGACTCTGCTCACCACCTTTTTGGTGATTTCTCCATGGCCCTTGT 359 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 474 CCTTCTCTGGTACAAAGACTCTGCTCACCACCTTTTTGGTGATTTCTCCATGGCCGTTGT 533 Query 360 CCAGGCCAACAACCTCCTTGAGGATCAGTGCCAGGTCGAATCCGGTCCTTTGACCACCCT 419 |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 534 CCAGGCCAACAACCTCCTCGAGGATCAGAGCCAGGTCGAATCCGGTCCTTTGACCACCCT 593 Query 420 CTCCTCTTCTGGTCCTTTTGGAACCTTTGTTGGCATCTATGACGGCCACGGCGGCCCTGA 479 ||| ||||||||||| | |||||||||||||||| |||||||||||||||| |||||||| Sbjct 594 CTCTTCTTCTGGTCCCTATGGAACCTTTGTTGGCGTCTATGACGGCCACGGAGGCCCTGA 653 Query 480 GACCTCCCGTTTTCTCAACGATCATCTCTTTCACCATCTCAAGAGATTCGCAGCCGAGCA 539 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 654 GACCTCCCGTTTTGTCAACGATCATCTCTTTCACCATCTCAAGAGATTCGCAGCGGAGCA 713 Query 540 GGACTCCATGTCTGTGGGTGTGATAAGAAAGGCGTATGAGGCAACCGAAAAAGGCTTTCT 599 ||| ||||||||||||| ||||||||||||||| ||||||||||||||| |||| ||||| Sbjct 714 GGATTCCATGTCTGTGGATGTGATAAGAAAGGCCTATGAGGCAACCGAAGAAGGGTTTCT 773 Query 600 AGGGGTGGTGACGAAACAGTGGGCAGTGAAGCCACATATAGCAGCGGTTGGCTCATGCTG 659 |||||||||| | || |||||||||||||||||||||||||||||||||||||| || || Sbjct 774 AGGGGTGGTGGCCAAGCAGTGGGCAGTGAAGCCACATATAGCAGCGGTTGGCTCTTGTTG 833 Query 660 CCTG 663 |||| Sbjct 834 CCTG 837 Score = 150 bits (81), Expect = 3e-35 Identities = 156/188 (83%), Gaps = 22/188 (12%) Strand=Plus/Plus Query 1316 GTGGTATCACTTTACCTAAGAAACTTTATAATTAGGTTCCATCCATCTTGTAGTTATATT 1375 |||||||||||||||||||||||||||| || ||| |||||||||||| |||||||||| Sbjct 1505 GTGGTATCACTTTACCTAAGAAACTTTAAAACCAGGCTCCATCCATCTTCTAGTTATATT 1564 Query 1376 TATCCAACCAAAGATAAGt-tttttcttttc---cttt-t-ttt----G-------GG-T 1417 |||||||||||||||| || ||||| ||||| |||| | ||| | || | Sbjct 1565 TATCCAACCAAAGATATGTGTTTTTTTTTTCTTTCTTTATGTTTTTTTGTCTTTTTGGGT 1624 Query 1418 TCACTCTTCTTGTTGGTATAAGAAATGTATAATTTTAAACTGAAGCTACCTGACATGTTG 1477 ||||||||| || | ||||||||||||||||||| |||||||||||| |||||||||| Sbjct 1625 TCACTCTTCCTG--G-TATAAGAAATGTATAATTTAAAACTGAAGCTAT-TGACATGTTG 1680 Query 1478 GATCTCAT 1485 |||||||| Sbjct 1681 GATCTCAT 1688 Score = 89.8 bits (48), Expect = 7e-17 Identities = 62/68 (91%), Gaps = 4/68 (6%) Strand=Plus/Plus Query 114 GTGAATGAATGCAAGTTTCCGACTGACTCCCTCTTCTTTTGTTTTTTCAACATACTTCAT 173 ||||||||||| |||||||||||| || |||||||||||||||||||||||||||||| Sbjct 266 GTGAATGAATGGAAGTTTCCGACT--CT--CTCTTCTTTTGTTTTTTCAACATACTTCAT 321 Query 174 CCATTCAT 181 ||||||| Sbjct 322 TCATTCAT 329 > AT5G02760.1 | Symbols: | Protein phosphatase 2C family protein | chr5:625254-627124 FORWARD LENGTH=1543 Length=1543 Score = 132 bits (71), Expect = 1e-29 Identities = 288/390 (74%), Gaps = 26/390 (7%) Strand=Plus/Plus Query 796 TGGCGTGTTAAGGGCTTTATTCAGGT-ATCACGATCCATAGGAGACGTGTATCTTAAGAA 854 |||||||| || ||| |||| ||||| | || |||||||||| || | || || || || Sbjct 754 TGGCGTGTGAAAGGCGTTATCCAGGTCA-CAAGATCCATAGGTGATGCATACCTCAA-AA 811 Query 855 -AGCGGAGTTCAACAGGGAACCTTTG-TACACAAAGTACCGACTGCGGGAGCCCATGA-A 911 ||| ||||||||||| ||||||||| | | |||| | | |||| | || | | | Sbjct 812 GAGCAGAGTTCAACAGAGAACCTTTGCTGCCCAAA-TTCAGACTACCAGAACATTTCACT 870 Query 912 AAGACCCAT-CTTGAGTGGGGAACCATCGA-TAACC-GTGCATGATCTCCA-ACCAGACG 967 ||| || || ||| |||| ||| ||||| | | ||| | | | || | ||| | | Sbjct 871 AAG-CCAATCCTT-AGTGCGGATCCATC-AGTCACCATTACGCG-GCT-TAGCCCACAAG 925 Query 968 ATCAGTTTCTGATAT-TTGCATCAGACGGACTTTTGGAGCAGCTTAGCAACCAAGAGGCT 1026 || ||||| | || | |||| ||||| || |||| |||||| ||||||||||| || ||| Sbjct 926 ATGAGTTTATAAT-TCTTGCTTCAGATGGGCTTTGGGAGCATCTTAGCAACCAGGAAGCT 984 Query 1027 GTTGA-AGTCGTTCAGAA-CCACCCAAGA-AACGGGATAGCGAGGAGACTGGTGAAAGCT 1083 ||||| | | || || || | ||| || || || ||||| |||||||| | |||||| Sbjct 985 GTTGATA-TTGTGCATAATTC-CCCTCGACAA-GGAATAGCAAGGAGACTACTTAAAGCT 1041 Query 1084 GCGCTGCAGGAGGCAGCAAAGAAAAGAGAGATGAGATACTTTGATCTCAACA-AGATTGA 1142 || || |||| |||||||||||||||||||||||||||| || || |||| |||| | Sbjct 1042 GCATTGAAGGAAGCAGCAAAGAAAAGAGAGATGAGATACTCAGACCT-AACAGAGATCCA 1100 Query 1143 AAGAGGAGTCAGGAGGCATTTCCACGACGA 1172 || || || ||||||||||||||||| Sbjct 1101 TCCTGGTGTAAGAAGGCATTTCCACGACGA 1130 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73242595155 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5