BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497008
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66080.1 | Symbols: | Protein phosphatase 2C family protein... 861 0.0
AT5G02760.1 | Symbols: | Protein phosphatase 2C family protein... 132 1e-29
> AT5G66080.1 | Symbols: | Protein phosphatase 2C family protein
| chr5:26423419-26425406 REVERSE LENGTH=1691
Length=1691
Score = 861 bits (466), Expect = 0.0
Identities = 520/546 (95%), Gaps = 3/546 (1%)
Strand=Plus/Plus
Query 718 AGCATAGAGTCTGTGAGGCAGGAAATGCACTCCTTACATCCTGATGACTCCCATATTGTC 777
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 964 AGCATAGAGTCTGTGAGGCAGGAAATGCACTCCTTACACCCTGATGACTCCCATATTGTC 1023
Query 778 CTCTTAAGGCACAATGTCTGGCGTGTTAAGGGCTTTATTCAGGTATCACGATCCATAGGA 837
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1024 GTCTTAAAACACAATGTCTGGCGTGTTAAGGGCATTATTCAGGTATCACGATCCATAGGA 1083
Query 838 GACGTGTATCTTAAGAAAGCGGAGTTCAACAGGGAACCTTTGTACACAAAGTACCGACTG 897
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1084 GACGTGTATCTTAAGAAATCGGAGTTCAACAAGGAACCTTTGTACACAAAGTACCGATTG 1143
Query 898 CGGGAGCCCATGAAAAGACCCATCTTGAGTGGGGAACCATCGATAACCGTGCATGATCTC 957
|||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||
Sbjct 1144 CGGGAGCCAATGAAAAGACCTATCTTGAGTTGGGAACCGTCGATAACCGTGCATGATCTC 1203
Query 958 CAACCAGACGATCAGTTTCTGATATTTGCATCAGACGGACTTTTGGAGCAGCTTAGCAAC 1017
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1204 CAACCAGACGATCAGTTTCTGATATTTGCATCAGACGGACTTTGGGAGCAGCTTAGCAAC 1263
Query 1018 CAAGAGGCTGTTGAAGTCGTTCAGAACCACCCAAGAAACGGGATAGCGAGGAGACTGGTG 1077
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 CAAGAGGCTGTTGAAATCGTTCAGAACCACCCAAGAAACGGGATAGCGAGGAGACTGGTG 1323
Query 1078 AAAGCTGCGCTGCAGGAGGCAGCAAAGAAAAGAGAGATGAGATACTT-TGATCTCAACAA 1136
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1324 AAAGCTGCGCTGCAGGAGGCAGCAAAGAAAAGAGAGATGAGATA-TTCTGATCTCAACAA 1382
Query 1137 GATTGAAAGAGGAGTCAGGAGGCATTTCCACGACGACATCAATGTGATTGTCCTCTTCCT 1196
|||||| ||||||||||||||||||||||| |||||||||| |||| | |||||||||||
Sbjct 1383 GATTGAGAGAGGAGTCAGGAGGCATTTCCATGACGACATCACTGTGGTCGTCCTCTTCCT 1442
Query 1197 GGACACCAATCTGCTCAGCAGAGCCTCCTCTCTCAATACCC-TTCTGTTTCAATTCGTGG 1255
||||||||||||||||||||||||||||||||| || |||| ||||||||| || |||||
Sbjct 1443 GGACACCAATCTGCTCAGCAGAGCCTCCTCTCTTAAAACCCCTTCTGTTTCTATCCGTGG 1502
Query 1256 TGGTGG 1261
||||||
Sbjct 1503 TGGTGG 1508
Score = 706 bits (382), Expect = 0.0
Identities = 451/484 (93%), Gaps = 5/484 (1%)
Strand=Plus/Plus
Query 180 ATACGAGATGAGGCCCGATGTTATCCCTTTTCATCAACTTTTTGGCCGCTTGTCTCTGGC 239
||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 359 ATATGAGATGAGGCCCGATGTTATCCCTTTTCTTCAACTTTTTGACCTCTTGTCTCTGGC 418
Query 240 CCTCTGGCCCTCTTCCTCCACTTCCCACTCTTACTCTGATTCCAAAGCCAAACAAGACGG 299
||||| |||||| ||||||||||| |||| ||||||||||||| ||||||||||||
Sbjct 419 CCTCT-----TCTTCCACCACTTCCCACACTTATTCTGATTCCAAAGGCAAACAAGACGG 473
Query 300 CCTTCTCTGGTACAAAGACTCTGCTCACCACCTTTTTGGTGATTTCTCCATGGCCCTTGT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 474 CCTTCTCTGGTACAAAGACTCTGCTCACCACCTTTTTGGTGATTTCTCCATGGCCGTTGT 533
Query 360 CCAGGCCAACAACCTCCTTGAGGATCAGTGCCAGGTCGAATCCGGTCCTTTGACCACCCT 419
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 534 CCAGGCCAACAACCTCCTCGAGGATCAGAGCCAGGTCGAATCCGGTCCTTTGACCACCCT 593
Query 420 CTCCTCTTCTGGTCCTTTTGGAACCTTTGTTGGCATCTATGACGGCCACGGCGGCCCTGA 479
||| ||||||||||| | |||||||||||||||| |||||||||||||||| ||||||||
Sbjct 594 CTCTTCTTCTGGTCCCTATGGAACCTTTGTTGGCGTCTATGACGGCCACGGAGGCCCTGA 653
Query 480 GACCTCCCGTTTTCTCAACGATCATCTCTTTCACCATCTCAAGAGATTCGCAGCCGAGCA 539
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 654 GACCTCCCGTTTTGTCAACGATCATCTCTTTCACCATCTCAAGAGATTCGCAGCGGAGCA 713
Query 540 GGACTCCATGTCTGTGGGTGTGATAAGAAAGGCGTATGAGGCAACCGAAAAAGGCTTTCT 599
||| ||||||||||||| ||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 714 GGATTCCATGTCTGTGGATGTGATAAGAAAGGCCTATGAGGCAACCGAAGAAGGGTTTCT 773
Query 600 AGGGGTGGTGACGAAACAGTGGGCAGTGAAGCCACATATAGCAGCGGTTGGCTCATGCTG 659
|||||||||| | || |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 774 AGGGGTGGTGGCCAAGCAGTGGGCAGTGAAGCCACATATAGCAGCGGTTGGCTCTTGTTG 833
Query 660 CCTG 663
||||
Sbjct 834 CCTG 837
Score = 150 bits (81), Expect = 3e-35
Identities = 156/188 (83%), Gaps = 22/188 (12%)
Strand=Plus/Plus
Query 1316 GTGGTATCACTTTACCTAAGAAACTTTATAATTAGGTTCCATCCATCTTGTAGTTATATT 1375
|||||||||||||||||||||||||||| || ||| |||||||||||| ||||||||||
Sbjct 1505 GTGGTATCACTTTACCTAAGAAACTTTAAAACCAGGCTCCATCCATCTTCTAGTTATATT 1564
Query 1376 TATCCAACCAAAGATAAGt-tttttcttttc---cttt-t-ttt----G-------GG-T 1417
|||||||||||||||| || ||||| ||||| |||| | ||| | || |
Sbjct 1565 TATCCAACCAAAGATATGTGTTTTTTTTTTCTTTCTTTATGTTTTTTTGTCTTTTTGGGT 1624
Query 1418 TCACTCTTCTTGTTGGTATAAGAAATGTATAATTTTAAACTGAAGCTACCTGACATGTTG 1477
||||||||| || | ||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1625 TCACTCTTCCTG--G-TATAAGAAATGTATAATTTAAAACTGAAGCTAT-TGACATGTTG 1680
Query 1478 GATCTCAT 1485
||||||||
Sbjct 1681 GATCTCAT 1688
Score = 89.8 bits (48), Expect = 7e-17
Identities = 62/68 (91%), Gaps = 4/68 (6%)
Strand=Plus/Plus
Query 114 GTGAATGAATGCAAGTTTCCGACTGACTCCCTCTTCTTTTGTTTTTTCAACATACTTCAT 173
||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 266 GTGAATGAATGGAAGTTTCCGACT--CT--CTCTTCTTTTGTTTTTTCAACATACTTCAT 321
Query 174 CCATTCAT 181
|||||||
Sbjct 322 TCATTCAT 329
> AT5G02760.1 | Symbols: | Protein phosphatase 2C family protein
| chr5:625254-627124 FORWARD LENGTH=1543
Length=1543
Score = 132 bits (71), Expect = 1e-29
Identities = 288/390 (74%), Gaps = 26/390 (7%)
Strand=Plus/Plus
Query 796 TGGCGTGTTAAGGGCTTTATTCAGGT-ATCACGATCCATAGGAGACGTGTATCTTAAGAA 854
|||||||| || ||| |||| ||||| | || |||||||||| || | || || || ||
Sbjct 754 TGGCGTGTGAAAGGCGTTATCCAGGTCA-CAAGATCCATAGGTGATGCATACCTCAA-AA 811
Query 855 -AGCGGAGTTCAACAGGGAACCTTTG-TACACAAAGTACCGACTGCGGGAGCCCATGA-A 911
||| ||||||||||| ||||||||| | | |||| | | |||| | || | | |
Sbjct 812 GAGCAGAGTTCAACAGAGAACCTTTGCTGCCCAAA-TTCAGACTACCAGAACATTTCACT 870
Query 912 AAGACCCAT-CTTGAGTGGGGAACCATCGA-TAACC-GTGCATGATCTCCA-ACCAGACG 967
||| || || ||| |||| ||| ||||| | | ||| | | | || | ||| | |
Sbjct 871 AAG-CCAATCCTT-AGTGCGGATCCATC-AGTCACCATTACGCG-GCT-TAGCCCACAAG 925
Query 968 ATCAGTTTCTGATAT-TTGCATCAGACGGACTTTTGGAGCAGCTTAGCAACCAAGAGGCT 1026
|| ||||| | || | |||| ||||| || |||| |||||| ||||||||||| || |||
Sbjct 926 ATGAGTTTATAAT-TCTTGCTTCAGATGGGCTTTGGGAGCATCTTAGCAACCAGGAAGCT 984
Query 1027 GTTGA-AGTCGTTCAGAA-CCACCCAAGA-AACGGGATAGCGAGGAGACTGGTGAAAGCT 1083
||||| | | || || || | ||| || || || ||||| |||||||| | ||||||
Sbjct 985 GTTGATA-TTGTGCATAATTC-CCCTCGACAA-GGAATAGCAAGGAGACTACTTAAAGCT 1041
Query 1084 GCGCTGCAGGAGGCAGCAAAGAAAAGAGAGATGAGATACTTTGATCTCAACA-AGATTGA 1142
|| || |||| |||||||||||||||||||||||||||| || || |||| |||| |
Sbjct 1042 GCATTGAAGGAAGCAGCAAAGAAAAGAGAGATGAGATACTCAGACCT-AACAGAGATCCA 1100
Query 1143 AAGAGGAGTCAGGAGGCATTTCCACGACGA 1172
|| || || |||||||||||||||||
Sbjct 1101 TCCTGGTGTAAGAAGGCATTTCCACGACGA 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73242595155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5