BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497009
Length=875
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66070.2 | Symbols: | RING/U-box superfamily protein | chr5... 725 0.0
> AT5G66070.2 | Symbols: | RING/U-box superfamily protein | chr5:26421855-26423232
FORWARD LENGTH=1005
Length=1005
Score = 725 bits (392), Expect = 0.0
Identities = 460/489 (94%), Gaps = 19/489 (4%)
Strand=Plus/Plus
Query 392 CAGATGGGAGCTGTGGAATCCCAGTTCCAAGAGCATACAGACATCTTTGACACTGCCATT 451
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 528 CAGATGGGAGCTGTGGAGTCCCAGTTCCAAGATCATACAGACATCTTTGACACTGCCATT 587
Query 452 TCAAAGGGTCTCACTGGGGACTCTCTCGACAGGATCCCAAAGGTCCGAATCACAGACACC 511
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 588 TCAAAGGGTCTCACTGGGGACTCTCTCAACAGGATCCCTAAGGTCCGAATCACAGACACC 647
Query 512 TCTCCGGAGATTGTCTCTTGCTCTGTCTGCCTTCAGGACTTTCAGGTGGGAGAGACAGTT 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TCTCCGGAGATTGTCTCTTGCTCTGTCTGCCTTCAGGACTTTCAGGTGGGAGAGACAGTT 707
Query 572 AGAAGTTTGCCGCAGTGCCATCATATGTTCCACCTACCATGCATCGACAAATGGCTTCGC 631
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 AGAAGTTTGCCGCACTGCCATCATATGTTCCACCTACCATGCATCGACAAATGGCTTCGC 767
Query 632 AGGCATGCTTCTTGTCCCTTGTGCAGAAGACATCTTTGAATTGAACTTGAACACCtcttt 691
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 768 AGGCATGCTTCTTGTCCCTTGTGCAGAAGACATCTTTGAATTGATTTTGAAC---TCTT- 823
Query 692 tcttctttcttctcttctttGTACATGAGGTATAGGCATacacacacataca------ca 745
||| | |||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 824 -CTT-T--CTTCTCTTCTTTGTACATGAGGTATAGGCATACACACACACACATATATACA 879
Query 746 cacTACTAGTCTTCCTTGATTTTTT--AGATTACACTTTACACAGATTTTGATGCACCAA 803
||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 880 CACTAGTAGTCTTCCTTGATTTTTTTTAGATTACACGTTACACAGATTTTGATGCACCAA 939
Query 804 TCATTGTAACTTCTTCACTCATCTCTTGGAGATCCTGTTTATTTATGCTACTTATTCTTG 863
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 TCATTGTAACTTC---ACTCATCTCTTGGAGATCCTGTTTATTTATGCTACTTATTCTTG 996
Query 864 GCTTCATCA 872
|||||||||
Sbjct 997 GCTTCATCA 1005
Score = 645 bits (349), Expect = 0.0
Identities = 379/394 (96%), Gaps = 0/394 (0%)
Strand=Plus/Plus
Query 1 AGATATGGATGGTTATTATTCTCTGTCGCCCATCTCCCTCCTCCATCGGATTAAAGATTC 60
||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||
Sbjct 65 AGATATGGATGGTTATTATTCTCTGTCTCCCATCTCTGTCCTCCACCGGATTAAAGATTC 124
Query 61 CTTCCATTTCGCCGTCTCTGCCCTTCTCGCCAACCTCTTCTCTGCTCTTTTCACCTTCTT 120
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 125 CTTCCATTTCGCCGTCTCTGCCCTTCTCGCCAACCTCTTCTCCGCTCTCTTCACCTTCTT 184
Query 121 CTTCGCTTTAGTTGGGACTTTGCTTGGAGCATTGACCGGGGCTTTGATCGGCCAAGAAAC 180
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 185 CTTCGCTTTAGTGGGGACTTTGCTGGGAGCATTGACAGGGGCTTTGATCGGCCAAGAAAC 244
Query 181 AGAGAGCGGTTTCATCAGAGGTGCCGCCGTTGGTGCTATCTCTGGCGCTGTCTTCTCCAT 240
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 245 AGAGAGCGGTTTCATCAGAGGAGCCGCCGTTGGTGCTATCTCAGGCGCCGTCTTCTCCAT 304
Query 241 CGAAGTCTTTGAATCTTCCCTCCTCCTCTGGCAATCCGATGAGTCTGGAATTGGATGCCT 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 305 CGAAGTCTTTGAATCTTCCCTCCTCCTTTGGCAATCCGATGAGTCTGGAATTGGATGCCT 364
Query 301 TCTCTACCTGATTGATGTCATTGCTAGCCTTTTGAGCGGGAGGCTTGTTCGTGAGCGTAT 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TCTCTACTTGATTGATGTCATTGCTAGCCTTTTGAGCGGGAGGCTTGTTCGTGAGCGTAT 424
Query 361 CGGCCCTGCAATGCTAAGTGCCGTCCAGAGTCAG 394
||| ||||||||||||||||||||||||||||||
Sbjct 425 CGGTCCTGCAATGCTAAGTGCCGTCCAGAGTCAG 458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42699024950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5