BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497012
Length=1562
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66055.1 | Symbols: EMB16, EMB2036, AKRP | ankyrin repeat pr... 1646 0.0
> AT5G66055.1 | Symbols: EMB16, EMB2036, AKRP | ankyrin repeat
protein | chr5:26417156-26419264 REVERSE LENGTH=1607
Length=1607
Score = 1646 bits (891), Expect = 0.0
Identities = 1019/1079 (94%), Gaps = 15/1079 (1%)
Strand=Plus/Plus
Query 1 AATGCAGTCCCTCGCCACACCACACACCATCACTCTTCTTCTCCCCGGCCCCGGGACCTC 60
||||||||| ||| |||| |||||||||||| |||||||||| |||| | |||||
Sbjct 30 AATGCAGTCACTCTCCACCCCACACACCATCTCTCTTCTTCT------CCCCAGAACCTC 83
Query 61 TCCGTCTCGTCTTTCTCCCTCTCTTCACTCCATTGTTTTCCCCACACGATTACGCTCTCT 120
||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| |||||
Sbjct 84 TCCGTCTCGTCTTTCTCCCTCTCTTCACTCCCTTGCTTTCCCCACTCGATTACGGTCTCT 143
Query 121 TTCCTATTCTTCTCAGACGTCGATCCTCCCCGATGCCGGCGATGATTTCATCGTCGGTGA 180
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 144 TTCCTATTCTTCTCAAACGTCGATCCTCCCCGATGCCGGCGATGATTTCATTGTCGGTGA 203
Query 181 CTGTCTCGTCTACGAGGACGGCGTCTTCGAAGACCCTTACCTTGAGACGGAGGTCACTCC 240
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 204 CTGTCTCGTCTACGAGGACGGCGTCTTCGAAGACCCTTACCTTGATAAGGAGGTCACTCA 263
Query 241 GGTTGCGAAGC---A--G-AAGAGGAATCCGCGGGGTGGGGCCAAGAGATTAGATGAATC 294
||||||||||| | | |||| ||||| ||| || ||||| |||||||||||||||||
Sbjct 264 GGTTGCGAAGCAGGAGCGCAAGAAGAATCGGCGTGGCGGGGCTAAGAGATTAGATGAATC 323
Query 295 CGAGATTGAACCCGAGAACCTCGTGCCGGAGGAATGGAGGGATATTCAGGCGGAGGTGAA 354
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 324 CGAGATTGAGCCCGAGAACCTCGTGCCAGAGGAATGGAGGGATATTCAGGCGGAGGTGAA 383
Query 355 TCTGACCAAGAAGGACAAGCGCAAGATAGCGCAGGAGATGGAGTTCGGGGTTCGGGTGGA 414
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 384 TCTGACGAAGAAGGACAAGCGCAAAATAGCGCAGGAGATGGAGTTCGGGGTTCGGGTGGA 443
Query 415 GAAGAAGAGACAAGGGCTGATTCCGCTGAGGAACGTCGACTTGAATGACTTTCTGACGTA 474
||||||||| |||||||| |||||||||||||| || ||||||||||||||||| |||||
Sbjct 444 GAAGAAGAGGCAAGGGCTAATTCCGCTGAGGAAAGTTGACTTGAATGACTTTCTCACGTA 503
Query 475 CAAGGAAGCCAAGTTGGCTCAATTGAGGCCTGTCACTCTCGATAAACCGGGCAATTTCTC 534
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 504 CAAGGAAGCCAAGTTGGCTCAATTGAGGCCTGTCATTCTCGATAAACCGGGAAATTTCTC 563
Query 535 CGAC--CA-TGCAGCGTCAAGCGATGGAGAGACCGCTGTATCATCTTCCAGCGAGCGAGT 591
|||| || || |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 564 CGACGACAGTGGAGCGTCAAGCGATGGAGAGACCGCTGTATCATCTCCCAGCGAGCGAGT 623
Query 592 GGCTCCTAAGAACCCTAGATGGGCAGTTTACGGCAAGGGATTCGACCACGTTGCCAAGTT 651
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 624 GGCTCCTAAGAACCCTAGATGGGCAGTTTACGGAAAGGGATTCGACCACGTTGCCAAGTT 683
Query 652 CTTCAATAGCGACAAATACGATCCCAGCGTCAAGAAATCCGACGGCCCTCGAAAGCTTCT 711
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 684 CTTCAATAGCGACAAGTACGATCCCAGCGACAAGAAATCCGACGGCCCTCGAAAGCTGCT 743
Query 712 TTCAAAAGAAGAAAAGTTTATGCTCAATAGCCGGAATCCTGACCTAGCAGTTGCCACATC 771
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 744 TTCAAAAGAAGAGAAGTTTATGCTCAATAGCCGGAATCCTGACCTAGCCGTTGCCACATC 803
Query 772 aaaaaaaTGGCTTCCTCTTCACACGCTGGCAGCATGTGGAGAGTTTTATCTGGTTGATTC 831
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 804 AAAAAAATGGCTTCCTCTTCACACACTGGCAGCATGTGGAGAGTTTTATCTGGTTGATTC 863
Query 832 CTTGCTAAAGCACAATCTTGATATCAACGCAACCGACGTGGGCGGCTTGACAGCACTTCA 891
||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||
Sbjct 864 CTTGCTAAAGCACAATCTTGATATCAATGCAACCGATGTGGGCGGCTTGACAGTACTTCA 923
Query 892 CCGAGCAATCATTGGTAAAAAGCAGGCTATTACCAACTACCTGCTGAGGGAATCGGCAAA 951
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 924 CCGAGCAATCATTGGTAAGAAGCAGGCTATTACTAACTACCTGCTGAGGGAATCGGCAAA 983
Query 952 TCCATTTGTTCTTGATGACGAAGGTGCGACCTTGATGCACTATGCTGTGCAAACAGCATC 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 TCCATTTGTTCTTGATGACGAAGGTGCGACCTTGATGCACTATGCTGTGCAAACAGCATC 1043
Query 1012 AGCTCCCACAATAAAACTTCTCCTACTGTATAACGCTGATATAAACGCTCAGGACAGGG 1070
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 AGCTCCCACAATAAAACTTCTCCTACTGTATAACGCTGATATAAACGCTCAGGACAGGG 1102
Score = 420 bits (227), Expect = 2e-116
Identities = 263/280 (94%), Gaps = 4/280 (1%)
Strand=Plus/Plus
Query 1138 GGACGGGTGGACTCCCCTGCACGTTGCAGTACAGGCCAGAAGAAGCGACGTTGTAAAGCT 1197
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1101 GGACGGGTGGACTCCACTGCACGTTGCAGTACAGGCCAGAAGAAGCGACATTGTAAAGCT 1160
Query 1198 TCTTTTGATAAAAGGGGCGGACATAGAAGTGAAGAACAAGGATGGGTTAACTCCGCTTGG 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 TCTTTTGATAAAAGGGGCGGACATAGAAGTGAAGAACAAGGATGGGTTAACTCCGCTTGG 1220
Query 1258 GCTTTGCCTCTACCTTGGAAGAGAGACAAGGACATATGAGGTGATGAAGATGTTGAAAGA 1317
|||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||
Sbjct 1221 GCTTTGCCTCTACCTTGGAAGAGAGATAAGGACGTATGAGGTGATGAAGCTGTTGAAAGA 1280
Query 1318 GTTTCC-CTGTAGCAGACACAAGAAGAGATTGATAACAACCGATGAAGCTATAGAATAGT 1376
|||||| || |||||||||||||||||||||| ||||||| ||||||| ||| |||||||
Sbjct 1281 GTTTCCACT-TAGCAGACACAAGAAGAGATTGGTAACAACAGATGAAGATATTGAATAGT 1339
Query 1377 CGTCTT-AATTGCAGCTTGAAGCACACTCACTTGTGAGAA 1415
| | || |||| |||||||||| |||||||||| ||||||
Sbjct 1340 CCT-TTCAATTTCAGCTTGAAGTACACTCACTTATGAGAA 1378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77108037120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5