BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497021
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66000.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 989 0.0
> AT5G66000.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G17540.3);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:26396467-26397500 REVERSE LENGTH=922
Length=922
Score = 989 bits (535), Expect = 0.0
Identities = 754/854 (88%), Gaps = 37/854 (4%)
Strand=Plus/Plus
Query 1 TTCAGAATTTCAACCTCCAAAACCCTAATTTTGGCGGTCTTCTCCTCTCTTATCTCTCTC 60
||||||||||| ||||||||||||||||||||||||| || |||||||||||| |
Sbjct 78 TTCAGAATTTCGACCTCCAAAACCCTAATTTTGGCGG---ACT--TCTCTTATCTCTTTT 132
Query 61 CGCAGGCGCATTCAAGG-TAAACTCTAGA-GT-TTGTATGTGTTATTATGGAAGGCCCCA 117
||||||||||||||||| || | ||| | |||||||||| |||||||||||| ||
Sbjct 133 CGCAGGCGCATTCAAGGTTAGA---GAGATTTGTTGTATGTGTAATTATGGAAGGCGTCA 189
Query 118 ATGTGCTGACAAAAGAGGTTGATGATAATGGAGTTCCACATCCTTCCACCAGTGTTGATT 177
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 190 ATGTGCTGACAAAAGAGGTTGATGCTAATGGAGTTCCACATCCTTCCACCAATGTTGATT 249
Query 178 ACCATCTTAGCTTTCTTTTAGCTTCGCATTTGAGTAACCCAGATCTCACCCCTCAGCAGA 237
||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| |||
Sbjct 250 ACCATCTTAGCATTCTTTTAGCTTCTCATTTGAGTAATCCAGATCTCACCCCTCAGGAGA 309
Query 238 TTGCAGAGGCTTCAAGATGTACTGCTGCCGCTGCTTCTATTGCTGCTAAGGCCGCCAGAG 297
||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 310 TTGCAGATGCTTCGAGATGTACTGCTGCCGCTGCTGCTATTGCTGCTAAGGCCGCCAGAG 369
Query 298 CTACTGCAGATGAGAAAGCCGCTGCTGCAGCAAAAGCTGTTGCTGCTGCTAAGTCCGCTT 357
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 370 CTACTGCAGATGAGAAAGCCGCTGCTGCAGCAAAAGCCGTTGCTGCTGCTAAGACCGCTT 429
Query 358 TAGATTTGATTGCTTCCTTTCCTCCTAACCAGGGACTCGTCCAAGACGCATGTCTCGACA 417
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 430 TAGATTTGATTGCCTCCTTTCCTCCTAACCAGGGACTCGTACAAGACGCATGTCTCCACA 489
Query 418 AGGACAACATGACGAA-AA-A-GCATGTTGCTGCTGA---G--GAT------G-ATGA-- 460
||||||| | || ||| || | ||||||||||||||| | | | | ||||
Sbjct 490 AGGACAAGAAGATGAAGAAGAAGCATGTTGCTGCTGACTTGTTGTTTTCCAAGGATGATG 549
Query 461 -ATTACCTTCCAAGTTGCTACTAGGAGACGTC---AGTCAGGGCATAATTTCAAACTCTT 516
|||||| |||||||||| ||| |||| |||| |||||||||||| ||||||||||||
Sbjct 550 CATTACCCTCCAAGTTGCAACTTGGAGGCGTCGTCAGTCAGGGCATAGTTTCAAACTCTT 609
Query 517 CTTCCAGTTGCCAACATAAGAACGAC--C-AGTGCGTGCTTCCCATAGGCTCAAGAGAGA 573
|||| ||||| ||||||||||||||| | |||| | | |||||| | ||||||||||||
Sbjct 610 CTTCGAGTTGTCAACATAAGAACGACGACCAGTGTGCGGTTCCCACATGCTCAAGAGAGA 669
Query 574 GGCTGAATACAGAGCCTGCCATTTCCAAGAGGGCGGATTTCGATGGCCTTAGCATGGAGT 633
||||||||||||||| |||| |||||||||||| ||| |||||||||||| |||||||||
Sbjct 670 GGCTGAATACAGAGCATGCCGTTTCCAAGAGGGTGGAATTCGATGGCCTTGGCATGGAGT 729
Query 634 TAGATACCGATAGACTGAACGAATCAGTCGGTGGAGAAGGAGCAAAAGAAGGGGTTCAGG 693
||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||
Sbjct 730 TAGATACCGATAGACTGAACGAATCTGTTAATGGAGAAGGAGCAAAAGAAGAGATTCAGG 789
Query 694 TGACCAGGAAAAGGGGGAGGCCAAAGTCCAAATGATTTGGCGTCTGCAATTTTGGTTTAG 753
|||| || ||||| ||||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct 790 TGACTAGAAAAAGAGGGAGGCCAAAGTCCAAATGATTTGGCTTCTGCAGTTTTGATTTAG 849
Query 754 TCTATTGGTTGTC-AACAGCCGCAAATGGTGTTTATCACACTTGATTCTAAGCGCATTTT 812
||| || |||| | || ||||||||||||||||||||| ||||||||||||| | |||||
Sbjct 850 TCTCTTTGTTG-CGAATAGCCGCAAATGGTGTTTATCAAACTTGATTCTAAGAGTATTTT 908
Query 813 TCTTATTGGTTTTC 826
||||||||||||||
Sbjct 909 TCTTATTGGTTTTC 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40237551747
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5