BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497026
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT5G32620.1 | Symbols: | transposable element gene | chr5:1226... 390 1e-107
AT3G15320.1 | Symbols: | transposable element gene | chr3:5154... 353 1e-96
> AT5G32620.1 | Symbols: | transposable element gene | chr5:12269749-12270681
FORWARD LENGTH=906
Length=906
Score = 390 bits (211), Expect = 1e-107
Identities = 260/283 (92%), Gaps = 5/283 (2%)
Strand=Plus/Plus
Query 1 ATGGATGATATGAATCCATTTTATCACTCATCGGGTTTCATGAACCTATTGCAAAGTCAA 60
|||||||||||||||||||| ||||| ||||||||||| ||| |||| ||||||||||||
Sbjct 1 ATGGATGATATGAATCCATTCTATCAGTCATCGGGTTTTATGGACCTGTTGCAAAGTCAA 60
Query 61 CAAGAAGACATGTCTCAGTTTGCAAGTGGATCAACTGAAGTCCCAACATTTAGTACTCAA 120
||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| ||||
Sbjct 61 CAAGAAGACATGTCTCAGTTTGCAAGTGGGTCAACTGAAGTCCCAGCTTTTAGTAGTCAA 120
Query 121 CTGTCTGAAGAAGGAAGTGAAG-AAGAAGGAAATGAAGCATCAGATGTCAAACCAAAGCA 179
||||||||||||||||||| || ||||||| ||||| || || |||||||| |||||
Sbjct 121 CTGTCTGAAGAAGGAAGTG-AGCTTGAAGGAAGTGAAG-AT--GAAGTCAAACCGAAGCA 176
Query 180 AAGTATATCACGAAAGAAATGGACAGCAAAAGAAGATATTGTTCTCGTCAGTGCTTGGCT 239
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 177 AAGTATATCACGAAAGAAATGGACAGCAAAAGAAGATATTGTTCTCGTTAGTGCTTGGCT 236
Query 240 TAATACAAGCAAGGATCCTGTGATTGGTAATGACCAACAAGCA 282
||| | ||||||||||||||||||||||||||||||||||||
Sbjct 237 CAATCCCAGCAAGGATCCTGTGATTGGTAATGACCAACAAGCA 279
Score = 359 bits (194), Expect = 3e-98
Identities = 258/289 (89%), Gaps = 4/289 (1%)
Strand=Plus/Plus
Query 474 GATCTACTACAATGATACCAAGAAGAATTTCACTTTAGATCATGCATGGAGAGAGTTAAA 533
|||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 456 GATCTACTTCAATGATACCAAGAAGAATTTCACTTTAGATCATGCTTGGAGAGAATTAAG 515
Query 534 GTTTGATCAGAAATGGTGTG-ATCAAACTACTCGGGGAGGAAATGAAAATGCTAAAAGAA 592
|| ||| ||||||||||||| | | || | ||| |||| ||||||||||||||||||
Sbjct 516 GTATGACCAGAAATGGTGTGAAGC-TACAAGTCGTAAAGGAGATGAAAATGCTAAAAGAA 574
Query 593 GGAAGTGTGGGGATGGTAATGCCAGTTCCCAGCCAATCAATGTTGAAGATGATTCAGTCA 652
|||||||||||||||||||||| |||||||| |||||| ||||||||||||||||| |||
Sbjct 575 GGAAGTGTGGGGATGGTAATGCAAGTTCCCATCCAATCCATGTTGAAGATGATTCAATCA 634
Query 653 TGAGTCGACCTCCTGGTGTGAAGGCAGCCAAAGCGAAAGGAAGGAAGTCAGCCACTGTTA 712
||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 635 TGAGTCGTCCTCCTGGTGTGAAGGCAGCCAAAGCTAAAGGAAGGAAGTCAGCCATTGTAA 694
Query 713 ACGAAGGAAAGAAGCCAGCCACGGGTAAAGGA-GAAGCAGGCCAGTCTG 760
| |||||||||||||||||||| | ||||| | || ||||||||||||
Sbjct 695 AAGAAGGAAAGAAGCCAGCCACAGTTAAAG-ATGATTCAGGCCAGTCTG 742
Score = 161 bits (87), Expect = 9e-39
Identities = 110/121 (91%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 760 GATCGCAAAGAGAAGCAAAGCAAGTATC-AGATGCTTGAAAGTCTACATTCAAGAACTGA 818
||||||||||| |||||||||||| ||| | | ||||||||| |||| ||||| ||||||
Sbjct 787 GATCGCAAAGAAAAGCAAAGCAAGCATCAACA-GCTTGAAAGACTACTTTCAAAAACTGA 845
Query 819 GCCTCTTTCGGACATTTACTTGTTCCTAAAAAATAAGCTAATCACGGAGCTTTGGTCCTA 878
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 846 GCCTCTTTCGGACATTGACTTGTTCCTAAAAAATAAGCTAATCACGGATCTTTGGTCATA 905
Query 879 A 879
|
Sbjct 906 A 906
> AT3G15320.1 | Symbols: | transposable element gene | chr3:5154208-5155071
REVERSE LENGTH=864
Length=864
Score = 353 bits (191), Expect = 1e-96
Identities = 257/289 (89%), Gaps = 4/289 (1%)
Strand=Plus/Plus
Query 474 GATCTACTACAATGATACCAAGAAGAATTTCACTTTAGATCATGCATGGAGAGAGTTAAA 533
|||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 414 GATCTACTTCAATGATACCAAGAAGAATTTCACTTTAGATCATGCTTGGAGAGAATTAAG 473
Query 534 GTTTGATCAGAAATGGTGTGAT-CAAACTACTCGGGGAGGAAATGAAAATGCTAAAAGAA 592
|| ||| |||||||||||||| | | | | ||| |||| || |||||||||||||||
Sbjct 474 GTATGACCAGAAATGGTGTGAAGCTA-CAAGTCGTAAAGGAGATAAAAATGCTAAAAGAA 532
Query 593 GGAAGTGTGGGGATGGTAATGCCAGTTCCCAGCCAATCAATGTTGAAGATGATTCAGTCA 652
||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct 533 AGAAGTGTGGGGATGGTAATGCAAGTTCCCAACCAATCCATGTTGAAGATGATTCAGTCA 592
Query 653 TGAGTCGACCTCCTGGTGTGAAGGCAGCCAAAGCGAAAGGAAGGAAGTCAGCCACTGTTA 712
||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| | |
Sbjct 593 TGAGTCGTCCTCCTGGTGTGAAGGCAGCCAAAGCTAAAGCAAGGAAGTCAGCCACTATAA 652
Query 713 ACGAAGGAAAGAAGCCAGCCACGGGTAAAGGA-GAAGCAGGCCAGTCTG 760
| |||||||||||||||||||||| ||||| | || ||||||||||||
Sbjct 653 AAGAAGGAAAGAAGCCAGCCACGGTTAAAG-ATGATTCAGGCCAGTCTG 700
Score = 287 bits (155), Expect = 1e-76
Identities = 193/211 (91%), Gaps = 3/211 (1%)
Strand=Plus/Plus
Query 70 ATGTCTCAGTTTGCAAGTGGATCAACTGAAGTCCCAACATTTAGTACTCAACTGTCTGAA 129
|||||||||||||||||||| ||||||||||||||| | ||||||| |||| ||||||||
Sbjct 1 ATGTCTCAGTTTGCAAGTGGGTCAACTGAAGTCCCAGCTTTTAGTAGTCAATTGTCTGAA 60
Query 130 GAAGGAAGTGAAGAAGAAGGAAATGAAGCATCAGATGTCAAACCAAAGCAAAGTATATCA 189
||||||||||| ||||||| ||||| || || |||||||| |||||||||||||||
Sbjct 61 GAAGGAAGTGATCTTGAAGGAAGTGAAG-AT--GAAGTCAAACCGAAGCAAAGTATATCA 117
Query 190 CGAAAGAAATGGACAGCAAAAGAAGATATTGTTCTCGTCAGTGCTTGGCTTAATACAAGC 249
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 118 CGAAAGAAATGGACAGCAAAAGAAGATATTGTTCTCGTTAGTGCTTGGCTCAATACCAGC 177
Query 250 AAGGATCCTGTGATTGGTAATGACCAACAAG 280
|||||||||||||||||||||||||||||||
Sbjct 178 AAGGATCCTGTGATTGGTAATGACCAACAAG 208
Score = 156 bits (84), Expect = 4e-37
Identities = 109/121 (90%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 760 GATCGCAAAGAGAAGCAAAGCAAGTATC-AGATGCTTGAAAGTCTACATTCAAGAACTGA 818
||||||||||| || ||||||||| ||| | | ||||||||| |||| ||||| ||||||
Sbjct 745 GATCGCAAAGAAAAACAAAGCAAGCATCAACA-GCTTGAAAGACTACTTTCAAAAACTGA 803
Query 819 GCCTCTTTCGGACATTTACTTGTTCCTAAAAAATAAGCTAATCACGGAGCTTTGGTCCTA 878
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 804 GCCTCTTTCGGACATTGACTTGTTCCTAAAAAATAAGCTAATCACGGATCTTTGGTCATA 863
Query 879 A 879
|
Sbjct 864 A 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5