BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg497035

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G48130.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   658    0.0  


> AT2G48130.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr2:19685066-19685993 
REVERSE LENGTH=765
Length=765

 Score =  658 bits (356),  Expect = 0.0
 Identities = 466/516 (90%), Gaps = 20/516 (4%)
 Strand=Plus/Plus

Query  1    AAGAAACTACGCAATCACATTTGTAGCCCTTGTGGTAGCTCTAGGGGGCGTAACAAAAGC  60
            ||||| |||||||||||||||||||||||||||||  |||||| || |||||||||||||
Sbjct  28   AAGAAGCTACGCAATCACATTTGTAGCCCTTGTGGCGGCTCTATGGAGCGTAACAAAAGC  87

Query  61   ACAGCCGAGTGGGTCATGC----G-----T--CCACTCTCTCTCCGCGCCTCAGCTACAT  109
            |||||||||  | ||||||    |     |  |||||||||||||| |||||||||||||
Sbjct  88   ACAGCCGAGCAGTTCATGCGTGAGCACACTGACCACTCTCTCTCCGTGCCTCAGCTACAT  147

Query  110  CACCGGAAACTCAACCACTCCCTCACAGCCTTGCTGTTCTCAGCTCGACTCTGTCATCAA  169
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  148  CACCGGAAACTCAACCACTCCCTCACAGCCTTGCTGTTCTCGGCTCGACTCTGTCATCAA  207

Query  170  ATCTTCGCCGCAATGCATCTGCTCAGCCGTCAACAGTCCGATTCCC-AACATCGGCCTTA  228
            |||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct  208  ATCTTCGCCGCAGTGCATCTGCTCAGCCGTCAACAGTCCGA-TCCCAAACATCGGCCTTA  266

Query  229  ACATTAACCGCACACAGGCCTTGCAGCTCCCCAATGCCTCATGCCCGCAACATTCAGACG  288
            |||||||||||||||||||||||||||||||||||| | | |    ||||||||||||||
Sbjct  267  ACATTAACCGCACACAGGCCTTGCAGCTCCCCAATG-C-C-T----GCAACATTCAGACG  319

Query  289  CCTCCCCTCACACAGTGCAACGCCGCCACTGGTCCAGCAGCACCGCCTCCCGCACCTTCA  348
            |||||||||||||| |||||||| |||||||||||| |||||| |||||||||||| |||
Sbjct  320  CCTCCCCTCACACAATGCAACGCGGCCACTGGTCCAACAGCACAGCCTCCCGCACCCTCA  379

Query  349  CCGACGGAAAATACCCCAGATGTGACACTAACCCCAACCTCATCGCCGGGTGCTCGTTCA  408
            ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  380  CCGACGGAAAAGACCCCAGATGTGACACTAACCCCAACCTCATTGCCGGGTGCTCGTTCA  439

Query  409  GGAGTTGGAGGTGGTTCCAAGACAATTCCCTCCGCTGGTGCCGGCTTGTCCACCGGGAAC  468
            |||||||||||||||||||||||| ||||||||| |||| |||||| ||||| | |||| 
Sbjct  440  GGAGTTGGAGGTGGTTCCAAGACAGTTCCCTCCGTTGGTACCGGCTCGTCCAGCAGGAAT  499

Query  469  GTCGACCGCGTGCCGCTGCATCTTCTTATGTTCGCT  504
            || |||| | ||||||||||| |||||||||| |||
Sbjct  500  GTTGACCCCTTGCCGCTGCATTTTCTTATGTTTGCT  535



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5