BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497036
Length=802
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13480.1 | Symbols: AtMYB79, MYB79 | myb domain protein 79 |... 1271 0.0
AT2G32460.1 | Symbols: MYB101, ATMYB101, ATM1 | myb domain prot... 82.4 6e-15
> AT4G13480.1 | Symbols: AtMYB79, MYB79 | myb domain protein 79
| chr4:7836675-7837684 FORWARD LENGTH=817
Length=817
Score = 1271 bits (688), Expect = 0.0
Identities = 756/790 (96%), Gaps = 0/790 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGAAGAAGTTTGGAGAAAAGGTCCATGGACCGCCGAGGAAGACCGTCTCTTGATC 60
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 1 ATGGTGGAAGAAGTTTGGAGAAAGGGTCCATGGACCGCCGAAGAAGACCGTCTTTTGATC 60
Query 61 GAATACGTCCGTGTTCACGGTGAAGGTCGTTGGAACTCTGTCTCTAAACTCGCAGGATTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAATACGTCCGTGTTCACGGTGAAGGTCGTTGGAACTCTGTCTCTAAACTCGCAGGATTG 120
Query 121 AAAAGGAATGGCAAAAGCTGCAGACTAAGATGGGTTAATTACCTTAGACCAGATCTCAAG 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 121 AAAAGGAATGGCAAAAGCTGCAGACTAAGATGGGTGAATTACCTTAGACCAGACCTCAAG 180
Query 181 AGAGGACAGATCACTCCTCATGAAGAAAATATAATACTTGAGCTACACGCTAAGTGGGGA 240
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 AGAGGACAGATCACTCCACATGAAGAAAGTATAATACTTGAGCTACACGCTAAGTGGGGA 240
Query 241 AATAGGTGGTCTTCAATTGCACGTAGTTTACCAGGAAGAACAGACAATGAGATCAAGAAC 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AATAGGTGGTCAACAATTGCACGTAGTTTACCAGGAAGAACAGACAATGAGATCAAGAAC 300
Query 301 TATTGGAGAACCCATTTCAAGAAAAAGGCAAAGCCTACGACTAACAATGCGGAGAAGATA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATTGGAGAACCCATTTCAAGAAAAAGGCAAAGCCTACGACTAACAATGCGGAGAAGATA 360
Query 361 AAGAGTCGTCTCCTAAAAAGGCAACAATTCAAGGAACAGAGAGAAATAGAGTTGCAACAA 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 AAGAGTCGTCTCCTAAAAAGGCAACACTTCAAGGAACAGAGAGAAATAGAGTTGCAACAA 420
Query 421 GAACAACAGTTGTTTCAGTTCGACCAACTCGATATGAAAAAGATCATCTCTTTACTCGAA 480
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 421 GAACAGCAGTTGTTTCAGTTCGACCAACTCGGTATGAAAAAGATCATCTCTTTACTCGAA 480
Query 481 GATAACAATAGCAGTAGCAGCAGCGATGGCGGTGGTGATGTGTTCTATTCTCCTTATCAA 540
|| ||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||
Sbjct 481 GAAAACAATAGCAGTAGCAGTAGCGATGGCGGTGGTGATGTGTTCTATTATCCTGATCAA 540
Query 541 ATAACACATTCTTCAAAACCCTTTGGATATAACCCTAATTCGTTGGAGGAGCAGTTACAA 600
||||||||||| |||||||||||||| |||||| ||||||| || |||||||||||||||
Sbjct 541 ATAACACATTCATCAAAACCCTTTGGCTATAACTCTAATTCATTAGAGGAGCAGTTACAA 600
Query 601 GGGAGGTTTACTCCGGTAAACATACCTGACGCTAATACTATGAGCGAAGACAATGCGATA 660
|| || ||| |||| |||||||||||||| ||||||||||||| |||||||||||| |||
Sbjct 601 GGTAGATTTTCTCCTGTAAACATACCTGATGCTAATACTATGAACGAAGACAATGCCATA 660
Query 661 TGGGATGGGTTTTGGAACATGGATGTTGTGGATGGAAATGGTGGGAACTTGGGTGTTGTT 720
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 661 TGGGACGGGTTTTGGAACATGGATGTTGTAAATGGACATGGTGGGAACTTGGGTGTTGTG 720
Query 721 GCTGCTACTGCTGCTTATGGCCCAAGGAAGCCCTATTTCCATAACTTGGTGATTCCATTT 780
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCTGCTACTGCTGCTTGTGGCCCAAGGAAGCCCTATTTCCATAACTTGGTGATTCCATTT 780
Query 781 TGTTAAGTAT 790
||||||||||
Sbjct 781 TGTTAAGTAT 790
> AT2G32460.1 | Symbols: MYB101, ATMYB101, ATM1 | myb domain protein
101 | chr2:13782208-13784471 REVERSE LENGTH=1792
Length=1792
Score = 82.4 bits (44), Expect = 6e-15
Identities = 140/185 (76%), Gaps = 12/185 (6%)
Strand=Plus/Plus
Query 129 TGGCAAAAGCTGCAGACTAAGATGGGTTAATTACCTTAGACCAGATCTCAAGAGAGGA-C 187
||||||||| ||| | ||| | |||| ||| | || | ||| |||| |||| |||| |
Sbjct 273 TGGCAAAAGTTGCCGTCTACGGTGGGCGAATCATCTCCGGCCAAATCTAAAGAAAGGATC 332
Query 188 AGATCACTCCTCATGAAGAAAATATAATAC-TTGAGCTACACGCTAAG-TGGGGAAATAG 245
| |||||| |||||||||| || || | | || || ||||||||| | ||||| |
Sbjct 333 -TTTTACTCCTGATGAAGAAAAGATCAT-CATCGACCTTCACGCTAAGCT-TGGAAACAA 389
Query 246 GTGGTCTTC-AATTGC-ACGT-AGTTTACCAGGAAGAACAGACAATGAGATCAAGAACTA 302
||| | || || || | | || ||||| |||||||||||||||||||||||||||||
Sbjct 390 ATGGGC-TCGTATGGCTTC-TCAG-TTACCTGGAAGAACAGACAATGAGATCAAGAACTA 446
Query 303 TTGGA 307
|||||
Sbjct 447 TTGGA 451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39031932219
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5