BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497040
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13450.1 | Symbols: | Adenine nucleotide alpha hydrolases-l... 1147 0.0
> AT4G13450.1 | Symbols: | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr4:7814960-7815904 REVERSE LENGTH=846
Length=846
Score = 1147 bits (621), Expect = 0.0
Identities = 777/847 (92%), Gaps = 31/847 (4%)
Strand=Plus/Plus
Query 1 ATGGAAGAGGGTCGTAGAGGATCATCTTCAACACCACAATCTCGTAAGATCATGGTGATC 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGAAGAGGGTCGTAGAGGATCATCTTCAACACCACAGTCTCGTAAGATCATGGTGATC 60
Query 61 GCTGATCCGACCCGTGAATCTGCAGCCGCTCTTCAATACGCTCTTTCACACGCCGTGCTC 120
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GCTGATCCGACACGTGAATCTGCAGCAGCTCTTCAATACGCTCTTTCACACGCCGTGCTC 120
Query 121 GAGCAAGACGAGCTTATTCTTGTTCATGTTGAAAACTCTGGTGGTTCTTGGAAAAACGCT 180
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||
Sbjct 121 GAGCAAGACGAGCTTATTCTTGTACATATTGAAAACTCTGGTGGTTCTTGGAAAAATGCT 180
Query 181 TTCTCAAGTTTTTTGAGATTACCAAGCTCCATCTCTTCCTCTAGCAGCGGCTCCTCCCCC 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 181 TTCTCAAGTTTTTTGAGATTACCAAGCTCAATCTCTTCCTCTAGCAGCGGCTCCTCTCCC 240
Query 241 GCTTCTAACGGCACCGCAACCGCTTCTAACGCGGCAGCAACCGCTTTAGCCTCTGAGATT 300
||||||||||| ||| |||||||||||||||| ||||||| ||| |||||||| ||||||
Sbjct 241 GCTTCTAACGGTACCACAACCGCTTCTAACGCCGCAGCAAACGCCTTAGCCTCGGAGATT 300
Query 301 GGTCAAGGAGATGGGAATTTCTTGGAACAGATGAAACGGATATGTGAAATCGCTCAGCCA 360
|||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 301 GGTCAAGGAGATGGTAACTTCTTGGAACAAATGAAACGAATATGTGAAATCGCTCAGCCA 360
Query 361 AAAGTGCGAGTACACACCGAGTGTATAGCTATGGAAGGTGTCAAAGCTACAGCGATTCTT 420
|| ||||| ||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 361 AAGGTGCGTGTACACACCGAGTGTATAGCTATAGATGGCGTCAAAGCTACAGCGATTCTT 420
Query 421 CTTCATGGTGACAAGCTTGGTGTTGATGTTATAATCATAGGCCAACGTCGGACAATCTCA 480
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 421 CTTCATGGTGACAAGCTTGGCGTTGATGTTATAATCATAGGCCAACGCCGGACTATCTCA 480
Query 481 TCCTCCCTTCTAGGAACTAGGAGGCCTGGAGGGTCACTAAGAGGTTCAAAAGGAGTAGAC 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 TCCTCCCTTCTAGGAACTAGGAGGCCTGGAGGGTCACTAAGAGGTTCCAAAGGAGTAGAC 540
Query 541 ACAGCGGAATATCTAATCGAGAACAGCAAATGCACTTGTGTTGGTGTAACGAAGAAAGGT 600
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACAGCGGAATATTTAATCGAGAACAGCAAATGCACTTGTGTTGGTGTAACGAAGAAAGGT 600
Query 601 CAAAATGGAGGTTATGTTTTAAACACCAAGACACATAAGAACTTCTGGCTCTTGGCATGA 660
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 CAAAATGGAGGATATGTTTTAAACACAAAGACACATAAGAACTTCTGGCTCTTGGCATGA 660
Query 661 TTATATGCATTGCTCCTAGTCAGTTTTAAATGCTTTCTG-T-G-ACAAA------GA-A- 709
||||||||||||||||||||||||||||||||||||| | | | | ||| || |
Sbjct 661 TTATATGCATTGCTCCTAGTCAGTTTTAAATGCTTTCGGGTAGTATAAATTAAAAGAGAA 720
Query 710 --T------A-A--G-A-A-GAA-ATAT--AAAGGTTACCTCCACTCATCGATCTTTTCT 752
| | | | | | ||| | || ||||||||||||||||||| |||||| ||
Sbjct 721 CATGTTGTGACAAAGCATAAGAAGAAATCTAAAGGTTACCTCCACTCATTGATCTTCACT 780
Query 753 TGttttttttC-C-TCATCTCTAAATTTCTAGCAATGAAGTGTTCTTTTGTATGTTATTT 810
|||||||||| | ||||||||||||| |||||||| |||||||||||| ||||||||||
Sbjct 781 TGTTTTTTTTTTCGTCATCTCTAAATT-CTAGCAATCAAGTGTTCTTTTATATGTTATTT 839
Query 811 TTCCCCT 817
|||||||
Sbjct 840 TTCCCCT 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39785444424
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5