BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497045
Length=2085
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13370.1 | Symbols: | Plant protein of unknown function (DU... 2911 0.0
> AT4G13370.1 | Symbols: | Plant protein of unknown function (DUF936)
| chr4:7777793-7780366 REVERSE LENGTH=2177
Length=2177
Score = 2911 bits (1576), Expect = 0.0
Identities = 1918/2080 (92%), Gaps = 35/2080 (2%)
Strand=Plus/Plus
Query 1 TTCTCAAACTCACAAACCTCACACAAAAATGGCGTCACTCGCCCCCGGAATCCTCCTAAA 60
|||||||||||||||| |||| ||||||||||| || || || |||||||| ||| ||||
Sbjct 5 TTCTCAAACTCACAAAGCTCAAACAAAAATGGCTTCTCTTGCTCCCGGAATTCTCTTAAA 64
Query 61 ACTCCTTCAATGTATGAACTCCGGCACACGTCCCACCGGAGACCACAGATCCGCAATCTT 120
|||||||||||| |||||||||||||| || ||||||||||| |||||||| ||||||||
Sbjct 65 ACTCCTTCAATGCATGAACTCCGGCACTCGCCCCACCGGAGATCACAGATCTGCAATCTT 124
Query 121 ACAAGTCACCGGAATCGTCCCAGCTCTCGCCGGCTCCGATCTATGGCCAAACCAAGGCTT 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 125 ACAAGTCACCGGAATCGTCCCAGCTCTCGCCGGCTCCGATCTATGGCCTAACCAAGGCTT 184
Query 181 CTACGTCCAAATCTCCGATTCTCTCAACTCCACTTACGTCTCTCTCTCCGAACGCGACAC 240
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 185 CTACGTCCAAATCTCAGATTCTCTCAATTCCACTTACGTCTCTCTCTCCGAACGCGACAC 244
Query 241 AGATCTAATCCTCACTAACCGTCTTCAGCTAGGTCAATTCATATACCTAGAACGCTTAGA 300
|||||||||||||| ||||||||| ||| ||||||||||||||||||| |||||||| ||
Sbjct 245 AGATCTAATCCTCAGTAACCGTCTCCAGTTAGGTCAATTCATATACCTCGAACGCTTGGA 304
Query 301 ATTCGCTACTCCAGTCCCACGCGCCGCCGGAATTCGTCCCGTCGCTGGTCGTCATGCATT 360
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 305 ATTCGCTACTCCAGTCCCACGTGCCGCAGGAATTCGTCCCGTCGCTGGTCGTCATGCCTT 364
Query 361 CGTCGGAACTCCAGAGCCGTTGATTGCAAGAGTATC-GCCTGGATCTAAACGTGATTTCG 419
|||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 365 CGTCGGAAAACCAGAGCCGTTGATTGCAAGAGTATCTAAC-GGATCTAAACGAGATTTCG 423
Query 420 TTATTCAGCCAGTTTCTGACTCTGAGTACTCGTTAGATCCTATTGCTGTTTACTTGAACA 479
||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 424 TTATTCAGCCAGTTTCTGATTCTGAGTACTCGTTAGATCCAATCGCTGTTTACTTGAACA 483
Query 480 ATAGAAGAATTGACGACGACGGCGACGGTGATGTTACGAAACCTAATTTGAGACAAGCGC 539
|||||||||||||||||||||| ||| |||||| | |||||||||| ||||||||||||
Sbjct 484 ATAGAAGAATTGACGACGACGGTGACAGTGATG-T--GAAACCTAATGTGAGACAAGCGC 540
Query 540 TTGCTCCGGTGAACCAAAACGAAGAGAATCGTAACCAAATTCGAAATCAGAAACCTAAAC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 TTGCTCCGGTGAACCAAAACGAAGAGAATCGTAACCAAATTCGAAATCAGAAACCGAAA- 599
Query 600 AGATGACGCCACAGAGATTCTCGTCACCAGCGTCTTCTAAACGGTCAGTTTCATCGGGGA 659
| ||| ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||
Sbjct 600 AC--GACTCCACAGAGATTCTCGTCACCAGCATCTTCTAAACGATCAGTCTCATCAGGGA 657
Query 660 AGAAGAA-TAGTTCCGGTGC---AG-TG-A-CGGTGGAGAGAGATCCATCACCGGCGGTT 712
||||||| | |||| ||||| || || | |||||||||||||||| ||||| | ||||
Sbjct 658 AGAAGAACT-GTTCTGGTGCTGTAGCTGTAACGGTGGAGAGAGATCCGTCACCTGTGGTT 716
Query 713 TCTGGGAAAGGGAGGAGATCTGCGTCTCCGGTTCCTTCGAAATGTGTTGTGCCGAGTCT- 771
||||| |||||||||||||||||||||||||| || || ||||| |||||||| || ||
Sbjct 717 TCTGGTAAAGGGAGGAGATCTGCGTCTCCGGTGCCGTCAAAATGCGTTGTGCCAAG-CTT 775
Query 772 AGCGGCGGCTCGTGAGGAGAATAGGAA-GCTTGCTAGAGAGCCGTCGATTGTTGTGCCGT 830
||||||||| ||||||||||||||||| | | ||||||||||| ||||||||||||||||
Sbjct 776 AGCGGCGGCGCGTGAGGAGAATAGGAAAG-TAGCTAGAGAGCCATCGATTGTTGTGCCGT 834
Query 831 CAAGGTATAGGCAACCATCACCTAATGGAAGGAAGATGAATCCTTCTCCTAGTGGAAGAA 890
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CAAGGTATAGACAGCCATCACCTAATGGAAGGAAGATGAATCCTTCTCCTAGTGGAAGAA 894
Query 891 GGATGTCGATTTCACCGGGAAGAAGGCTTTCTAGTGGTTTGAAGATGTCTCCAATGGTTG 950
| ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||
Sbjct 895 GAATGTCGATTTCACCGGGAAGAAGACTTTCTAGTGGTTTAAAGATGACTCCAATGGTTG 954
Query 951 TAGATTCTTCAGGGAAGAAGAAGATGGCGGCGATTGCAGCCGGAATTTCCAAAGTTTCGG 1010
||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| |
Sbjct 955 GAGATTCTTCAGGGAAGAAGAAGATGGCGGTGATTGCAGCCGGAATCTCAAAAGTTTCTG 1014
Query 1011 AAGCTTTAGTCGGTTCGTCTGCTAAGAATGTTAATAG-AAAGAATTGGGATGAACCATTA 1069
|||||||||||||||||||||||||||||| |||| | ||| |||||||| |||||||||
Sbjct 1015 AAGCTTTAGTCGGTTCGTCTGCTAAGAATGGTAATCGGAAA-AATTGGGAGGAACCATTA 1073
Query 1070 GGAGCTGATGGTAGTGTTAAGAATAAGCCTAATCATCAAGCAATTTTGCGTACTCAGGCT 1129
| || ||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1074 GCAGGTGATGGTAGTGCTAAGAATAAGCCTGATCACCAAGCAATTTTGCGTACTCAGGCT 1133
Query 1130 GCTATGACGAGGCGACTCAGTGATGTGAATAGGCGAAAGAGTGATTCTTC------AGCG 1183
|||||||||||||| |||||||||| |||||| ||||||||| |||||| || |
Sbjct 1134 GCTATGACGAGGCGTCTCAGTGATGCAAATAGGAGAAAGAGTGGTTCTTCTTCTTCAGTG 1193
Query 1184 TGTGAAGAGAAAGCGAAGTCGTGTTCATCAGAGAGTAGTTTACTAGAAGAAGTCTCAGT- 1242
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1194 TGTGAAGAGAAAGCGAAGTCGTGTTCATCAGAGAGTAGTTTATTAGAAGAAGTCTCAGCC 1253
Query 1243 TGTTGAAGGACTTGGTATCACTTATCATGAAAGGAAATGGACTGATGGTAGTGTTCCATT 1302
| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
Sbjct 1254 T-TTGAAGGACTTGGTATCACTTATCATGAACGGAAATGGACGGATGGTAGTGTTCCACT 1312
Query 1303 GGCTAGCATCTCTGATGAACTTGCGAAACTTGGAAAGGAGGCTATGCAAAGAAGAGACTT 1362
|| ||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1313 GGATAGTATCTCTGATGAACTTGCAAAACTTGGAAAGGAGGCTATGAAAAGAAGAGACTT 1372
Query 1363 TGCTGCTAGAGCCGCAGCTCGAGCATTGGAGGAAGCTAATGCTAATGAGTGCATCATAAG 1422
|||||||| ||| |||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1373 TGCTGCTAAAGCTGCAGCTAGAGCATTGGAGGAAGCTAATGCCAATGAGTGCATCATAAG 1432
Query 1423 ATGTTTAAGTAAATTCTCGGAACTTTCTTCGGCTTCCAAGGTGGGGAATCCGTTGCGAAT 1482
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1433 ATGTTTAAGTAAATTCTCCGAACTTTCTTCGGCTTCCAAGGTGGGGAATCCATTGCGAAT 1492
Query 1483 CATCAACGAGTTTTT-AACAATCTATGAAGATGTTATGAAATACAGTAAGATAGCCTCAG 1541
||||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1493 CATCAACGAGTTTTTGAA-AATCTATGAAGATGTCATGAAATACAGTAAGATAGCTTCAG 1551
Query 1542 AAAACAGTTTCAGCTCGTCATCTGATCAACAAAACCCAATCGCTCTTTGGGTTGAAGCTG 1601
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1552 AAAACAGTTTCAGCTTGTCATCTGATCAACAAAACCCAATCTCTCTTTGGGTTGAAGCTG 1611
Query 1602 CATTAGCTACTAACCTCGACGTAGTCTCACTAGTGAAAAGCCAGGAATCGCCATCGTCTC 1661
||||||||||||||||||| || || ||||||||||||||||| ||||| ||||||||||
Sbjct 1612 CATTAGCTACTAACCTCGAGGTGGTGTCACTAGTGAAAAGCCATGAATCACCATCGTCTC 1671
Query 1662 TGAAGAAATCTATGCCTACTCGTCTCTCTCCTAGACCTTCTAGCAAGACAGACAATATTG 1721
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 TGAAGAAATCAATGCCTACTCGTCTCTCTCCTAGACCTTCTAGCAAGACAGACAATATTG 1731
Query 1722 TTGGGATGTGGACAGACATAGATGGATTAAAGGAAACAGCTAAATTCGCAGTGAACCTAC 1781
||||||||||||||||| ||||||| || |||||||| ||||| || || ||||| ||||
Sbjct 1732 TTGGGATGTGGACAGACTTAGATGGCTTGAAGGAAACGGCTAAGTTTGCGGTGAATCTAC 1791
Query 1782 AATCCGAAATGCAAATGTGGTTCATTGGGTTCGTGGAAGAATCATTAGACAACAAAAACG 1841
|||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1792 AATCTGAAATGCAAGTGTGGTTCATTGAGTTCGTGGAAGAATCGTTAGACAACAAAAACG 1851
Query 1842 CAGCAAAACGATCTTTAGACGGTAGTTCCATAGCTGCAGTTCTGTCTCAGCTGAAACAAG 1901
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1852 CAGCAAAACGATCTTTAGACGGTAGTTCCATAGCTGCAGTTTTGTCTCAGCTGAAACAAG 1911
Query 1902 TTAACGAGTGGCTGGACCGGGTCTTGTCGAACCAAGAAAACCAGATCACAACAATGGACA 1961
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1912 TTAACGAGTGGCTGGACCGGGTCTCGTCGAACCAAGAAAACAAGATCACAACAATGGACA 1971
Query 1962 AGATCGAGCGACTAAAACGCAAAATCTACGGATTCGTTATCCATCATGTTGGATCTACTT 2021
|||||||||| || |||||||| ||||| ||||||||||||||||| || |||||||| |
Sbjct 1972 AGATCGAGCGGCTGAAACGCAAGATCTATGGATTCGTTATCCATCACGTCGGATCTACAT 2031
Query 2022 ATGACAACTCTGCTTCTTCTTCTTGATTTCATCttttttt 2061
||||||||||||||||||||| ||||||||||||||||
Sbjct 2032 ATGACAACTCTGCTTCTTCTT---GATTTCATCTTTTTTT 2068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103362922155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5