BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497050
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13345.1 | Symbols: MEE55 | Serinc-domain containing serine ... 2237 0.0
AT3G24460.1 | Symbols: | Serinc-domain containing serine and s... 1055 0.0
> AT4G13345.1 | Symbols: MEE55 | Serinc-domain containing serine
and sphingolipid biosynthesis protein | chr4:7765073-7769688
FORWARD LENGTH=1995
Length=1995
Score = 2237 bits (1211), Expect = 0.0
Identities = 1412/1505 (94%), Gaps = 30/1505 (2%)
Strand=Plus/Plus
Query 269 TATTATTTGCCAAGGATC----TATGATCTTCCAATGTCATGAAGAAGGGAGAGTTTGCT 324
|||| ||||||||||||| |||||||||||||||||||||||||| |||||| ||||
Sbjct 475 TATTTTTTGCCAAGGATCTATATATGATCTTCCAATGTCATGAAGAAGAGAGAGTCTGCT 534
Query 325 AAG-TTTAAAGACTTATGGAGACCGGTACAAGCATTGACAAGAATGGCTATGAAGGAATA 383
|| ||||| |||||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct 535 -AGATTTAAGGACTTATGGAAACCGGTACAAGCATTGACAACACTGGCTATGAAGGAATC 593
Query 384 AAGAACGGTTCGTGGTTTAGCCAGTTTCGTAATGGCTGCAATCCATGGATGGCTAGATAT 443
||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 594 AAGAACGGTTCATGGTTTATCCAGTTCCGTAATGGCTGCAATCCATGGATGGCTAGATAT 653
Query 444 GTGTACGGTCTGATATTCCTCTTGGCAAATTTG-TTGGCTTGGGCCTTGCGCGATTATGG 502
||||||||||| |||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct 654 GTGTACGGTCTAATATTCCTCTTGGCAAATCTGCTT-GCTTGGGCCTTGCGTGATTATGG 712
Query 503 CCGAGGTGCCTTGACCGAGATGAGAAAATTCAAGAATTGTAAAGAAGGTGGAGAGTGTTT 562
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 713 CCGAGGCGCCTTGACCGAAATGAGAAAATTCAAGAATTGTAAAGAAGGTGGAGACTGTTT 772
Query 563 GGGGACGGAAGGAGTTTTACGAGTAAGCTTGGGATGTTTTTTGTTCTATTTCATTATGTT 622
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 773 AGGGACGGAAGGAGTTTTACGAGTTAGCTTCGGATGTTTTTTGTTCTATTTCATTATGTT 832
Query 623 TCTTTCAACCGTTGGCACATCAAAGACGAATTCATCGAGAGATAAATGGCATTCAGGATG 682
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 833 TCTTTCAACCGTTGGGACATCAAAGACGCATTCATCGAGAGATAAATGGCATTCAGGATG 892
Query 683 GTGGTTTGCTAAGCTTTTCATGTGGCTTGGCTTAACCATCTTCCCCTTTTTGTTGCCTTC 742
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 893 GTGGTTTGCTAAGCTTTTCATGTTGCTTGGCTTAACCATCTTCCCCTTTTTGTTGCCTTC 952
Query 743 TTCCATTATTCAGCTTTACGGGGAGATTGCCCATTTTGGTGCAGGGGTATTTCTCCTAAT 802
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 953 TTCCATTATTCAGTTTTACGGGGAGATTGCCCATTTTGGTGCAGGGGTCTTTCTCCTAAT 1012
Query 803 TCAGCTCATTAGTATCATTAGTTTCATTACATGGCTCAATGAATGCTTCCAAGCACAAAA 862
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1013 TCAGCTGATTAGTATCATTAGTTTCATTACATGGCTCAATGAATGTTTCCAAGCACAAAA 1072
Query 863 AGATGCAGAAAGATGCCATGTCCATGTGATGCTACTAGCGACTACTGCGTACACCGTATG 922
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1073 AGATGCAGAAAGATGCCATGTCCATGTAATGCTACTAGCGACTACTGCGTACACCGTGTG 1132
Query 923 CATATTAGGGGTTATTTTGATGTACATTTGGTATGTGCCTGATCCATCATGCCTTCTCAA 982
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1133 CATATTAGGGGTTATTTTGATGTACATTTGGTATGTGCCTGAACCATCATGCCTTCTCAA 1192
Query 983 CATATTTTTCATCACATGGACTTTGTTCCTCATCCAACTCATGACAAGTATCTCTCTCCA 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 CATATTTTTCATCACATGGACTTTGTTCCTCATCCAACTCATGACAAGTATCTCTCTCCA 1252
Query 1043 CCCCAAAATAAATGCTGGATTCTTGACTCCAGCACTTATGGGGCTTTATGTTGTGTTTAT 1102
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1253 CCCCAAAATAAATGCTGGATTCTTGACTCCAGCGCTTATGGGGCTTTACGTTGTGTTTAT 1312
Query 1103 CTGCTGGTGCGCCATTCGAAGTGAGCCAGTAGGAGAAACTTGCAATC-GAAAAGCCGAAG 1161
||||||||||||||||||||||||||| ||||||||||||||||| | ||||||| ||||
Sbjct 1313 CTGCTGGTGCGCCATTCGAAGTGAGCCTGTAGGAGAAACTTGCAA-CAGAAAAGCAGAAG 1371
Query 1162 GTTCTAGCAGAACAGACTGGCTTACCATCATAAGCTTTGTTGTTGCACTGGTTGCAATGG 1221
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1372 GTTCTAGTAGAACAGACTGGCTTACCATCATAAGCTTTGTTGTTGCACTGCTTGCAATGG 1431
Query 1222 TAATTGCGACATTCTCCACGGGCGTAGATTCCCAATGTTTCCAGTTTAGAAAAGATGAGA 1281
|||| ||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 1432 TAATAGCGACATTCTCGACGGGAGTAGATTCACAATGTTTTCAGTTTAGAAAAGATGAGA 1491
Query 1282 ATCATGAGGAAGATGCAATTCCTTACGGATATGGATTCTTCCATTTTGTGTTTGCTACCG 1341
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 1492 ATCATGAGGAAGATGCAATTCCTTACGGATACGGATTCTTTCATTTTGTGTTTGCTACTG 1551
Query 1342 GAGCAATGTACTTTGCGATGCTACTTGTTGGCTGGAACATTCATCATTCCATGAAAAAGT 1401
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1552 GAGCAATGTACTTTGCAATGCTACTTGTTGGTTGGAACATTCACCATTCCATGAAAAAGT 1611
Query 1402 GGACCATTGACGTTGGGTGGACAAGTACTTGGGTAAGGATAGTGAACGAATGGCTCGCGG 1461
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1612 GGACGATTGACGTTGGGTGGACAAGTACTTGGGTAAGGATTGTAAACGAATGGCTCGCGG 1671
Query 1462 TTGGCGTTTATATTTGGATGTTGGTGGCTCCAATGGTACTGAAAAGTAGACAAACAACAT 1521
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 TTGGCGTTTACATTTGGATGTTGGTGGCTCCAATGGTACTGAAAAGTAGACAAACAACAT 1731
Query 1522 GAGAGATCACTACAGAGAGATTTTT-TCA--TCTCGGT--AT-T--G--T-G-G-ATCTT 1568
|||||||||| |||||||||||||| ||| |||| | || | | | | | |||||
Sbjct 1732 GAGAGATCACCACAGAGAGATTTTTGTCACCTCTCAATTCATCTCCGCATTGTGGATCTT 1791
Query 1569 GTCGAAAAATAGAATAGAAGATT-AAGATTG-GATAACTGTGTGAAATCA-TCATATATT 1625
||||||||||||||||||||||| ||||||| | ||||||||||||||| | |||||||
Sbjct 1792 GTCGAAAAATAGAATAGAAGATTTAAGATTGAGG-AACTGTGTGAAATCAAT-ATATATT 1849
Query 1626 TGTACTTAGATTCTTTAGGATCAAAGAAAGATGGATACAAATATAGCTATAGATTAGTAA 1685
|||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1850 TGTACTTAGATTGTTTAGGATCAAAGAAAGATGGATACAAATATAGCTATACACTAGTAA 1909
Query 1686 TACTGACCCTAATAGGGT-CTCTATTCATGAAGCGTGTACACGTTATTACACATACATCT 1744
||||| |||||| || || ||||| ||||||||||||||||| |||| ||||||||||||
Sbjct 1910 TACTGTCCCTAA-AGAGTTCTCTAATCATGAAGCGTGTACACATTATAACACATACATCT 1968
Query 1745 CTCTA 1749
|||||
Sbjct 1969 CTCTA 1973
Score = 359 bits (194), Expect = 6e-98
Identities = 243/265 (92%), Gaps = 9/265 (3%)
Strand=Plus/Plus
Query 1 AAGAAAGAAAGTG-TTTAAAA-AGAGCAAAACTCAGAAGAAACAACAAAACCTGAAATCA 58
||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 7 AAGAAAGAAAGTGTTTTAAAAGAGAGC-AAACTCAGAAGAAACAACAAAACCTGAAATCA 65
Query 59 TTAATTTTCTTCTTTTTCACAATTTCCTCTCAGATCTTTTTTGGGGTTTCTCATTTGTAA 118
|| ||||||||||| |||||||||| ||||| |||| ||||| ||||||||||||| |||
Sbjct 66 TTCATTTTCTTCTTCTTCACAATTTTCTCTCTGATCGTTTTT-GGGTTTCTCATTTATAA 124
Query 119 GTAAAACCTCTAATAAGAAACATTTTTCACATCTCCAGATCTGATCTTGAGCTTTTGCAC 178
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 125 GTAAAACCTCTAATAAGAAACATTTTTCACATCACCAGATCCGATCTTGAGCTTTTGCAC 184
Query 179 CAGCaaaaaaaaaaCAAGTTCTTTGTTCT---GAAGGAAGACAAGTAAAGGCTTCTGGAG 235
|||||||||||||||| |||||||||||| |||||||||||| |||| ||| ||||||
Sbjct 185 CAGCAAAAAAAAAACAGGTTCTTTGTTCTACTGAAGGAAGACAACTAAACGCTACTGGAG 244
Query 236 T--CTTTCTTGTGTTTAGTCTGGTC 258
| ||||||||||||||||| ||||
Sbjct 245 TGTCTTTCTTGTGTTTAGTCCGGTC 269
> AT3G24460.1 | Symbols: | Serinc-domain containing serine and
sphingolipid biosynthesis protein | chr3:8885818-8893050 REVERSE
LENGTH=1976
Length=1976
Score = 1055 bits (571), Expect = 0.0
Identities = 965/1151 (84%), Gaps = 44/1151 (4%)
Strand=Plus/Plus
Query 370 GCTATGAAGGAATAAAGAACGGTTCGTGGTTTAGCCAGTTTCGTAATGGCTGCAATCCAT 429
||||||||| ||| ||||| || || ||||||| ||||| || || ||||||||||| |
Sbjct 457 GCTATGAAGCAATCAAGAATGGATCATGGTTTAATCAGTTCCGCAACGGCTGCAATCCCT 516
Query 430 GGATGGCTAGATATGTGTACGGTCTGATATTCCTC-TTGGCAAATTTGTTGGCTTGGGCC 488
|||||||||||||||| |||||||||||||||||| || || ||| | | ||||||| |
Sbjct 517 GGATGGCTAGATATGTATACGGTCTGATATTCCTCATT-GCGAATCTACTAGCTTGGG-C 574
Query 489 TTG--CGCGATTATGGCCGAGGTGCCTTGACCG-AGA-TGAGAAAATTCAAGAATTGTAA 544
|| || |||||||| || |||||||| | | | | ||| || ||||||||| |||||
Sbjct 575 -TGCTCGTGATTATGGTCGGGGTGCCTT-A-AGAAAAGTGACAAGATTCAAGAACTGTAA 631
Query 545 AGAAGGTGGAGAGTGTTTGGGGACGGAAGGAGTTTTACGAGTAAGCTTGGGATGTTTTTT 604
|| || | | | ||||||||||| || || || ||| |||| |||||||||||||||||
Sbjct 632 AGGTGGCGAAAACTGTTTGGGGACCGACGGTGTCTTAAGAGTTAGCTTGGGATGTTTTTT 691
Query 605 GTTCTA-TTTCATTATGTTTCTTTCAAC-CGTTGGCACATC-AAAGACGAATTCATCGAG 661
|||||| ||| |||||||||||||||| | |||| || || ||| ||| ||||||| ||
Sbjct 692 GTTCTACTTT-GTTATGTTTCTTTCAACAC-TTGGTACGTCGAAA-ACGCATTCATCAAG 748
Query 662 AGATAAATGGCATTCAGGATGGTGGTTTGCTAAGCTTTTCATGTGGCTTGGCTTAACCAT 721
||||| ||||||||| ||||||||||||| |||||| ||||||||| || |||||||||
Sbjct 749 AGATAGATGGCATTCTGGATGGTGGTTTGTTAAGCTCATCATGTGGCCTGCCTTAACCAT 808
Query 722 C-TTCCCCTTTTTG-TTGCCTTCTTCCATTATTCAGCTTTACGGGGAGATTGCCCATTTT 779
| || ||||| ||| || ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 809 CATT-CCCTTCTTGCTT-CCTTCTTCCATTATTCACCTTTACGGAGAGATTGCCCATTTT 866
Query 780 GGTGCAGGGGTATTTCTCCTAATTCAGCTCATTAGTATCATTAGTTTCATTAC-ATGGCT 838
|||||||||||||||||| |||| ||||| |||||| | || ||||||||| | ||||||
Sbjct 867 GGTGCAGGGGTATTTCTCTTAATACAGCTAATTAGTGTGATCAGTTTCATT-CAATGGCT 925
Query 839 CAATGAATGCT-TCCAAG-CACAAAAAGATGCAGAAAGATGCCATGTCCATGTGATGCTA 896
||| ||||||| | | || | |||||||||||||||||||||| |||| |||||||| ||
Sbjct 926 CAACGAATGCTAT-C-AGTCCCAAAAAGATGCAGAAAGATGCCGTGTCTATGTGATGTTA 983
Query 897 CTAGCGACTACTGCGTACACCGTATGCATATTAGGGGTTATTTTGATGTACATTTGGTAT 956
||| | |||||| | ||||| || |||||| |||| || ||||||||||||||||||||
Sbjct 984 CTATCAACTACTTCATACACAGTTTGCATAGTAGGAGTGATTTTGATGTACATTTGGTAC 1043
Query 957 GTGCCTGATCCATCATGCCTTCTCAACATATT-TTTCATCACATGGACTTTGTTCCTCAT 1015
| ||||||| | ||||| |||||||| ||||| ||| || ||||||||||||||||||||
Sbjct 1044 GCGCCTGATTCTTCATGTCTTCTCAATATATTCTTT-ATAACATGGACTTTGTTCCTCAT 1102
Query 1016 CCAACTCATGACAAGTATCTCTCTCCACCCCAAAATAAATGCTGGATTCTTGACTCCAGC 1075
||||||||||||||| ||| ||||||| || ||| | |||||||||| ||||||||||||
Sbjct 1103 CCAACTCATGACAAGCATCGCTCTCCATCCTAAAGTTAATGCTGGATACTTGACTCCAGC 1162
Query 1076 ACTTATGGGGCTTTATGTTGTGTTTATCTGCTGGTGCGCCATTCGAAGTGAGCCAGTAGG 1135
|||||||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct 1163 TCTTATGGGACTCTATGTTGTGTTTATATGCTGGTGTGCCATTCGAAGTGAACCAGTGGG 1222
Query 1136 AGAAACTTGCAATCGAAAAGCCGAAGGTTCTAGCAGAACAGACTGGCTTACCATCATAAG 1195
|||| ||| ||| ||||||| | || ||| | |||||||||||||||||||||||| ||
Sbjct 1223 CGAAAGTTGTAATAGAAAAGCAGCAGCTTCAAACAGAACAGACTGGCTTACCATCATTAG 1282
Query 1196 CTTTGTTGTTGCACTGGTTGCAATGGTAATTGCGACATTCTCCACGGGCGTAGATTCCCA 1255
|||||| ||||| || |||| ||||| || |||||||| || || || |||| |||||
Sbjct 1283 CTTTGTGGTTGCGCTACTTGCGATGGTTATCGCGACATTTTCGACAGGAATAGACTCCCA 1342
Query 1256 ATGTTTCCAGTTTA-GAAAAGATGAGAA---TCATGAGGAAGATGC--AA--T--T---C 1302
||||||||| |||| |||| |||||||| ||| || ||||| || || | | |
Sbjct 1343 ATGTTTCCAATTTAAGAAA-GATGAGAACGATCAAGAAGAAGAAGCTGAAGATGATGTTC 1401
Query 1303 CTTACGGATATGGATTCTTCCATTTTGTGTTTGCTACCGGAGCAATGTACTTTGCGATGC 1362
| || || ||||||||||| |||||||||||||| || |||||||||||||| || ||||
Sbjct 1402 CATATGGCTATGGATTCTTTCATTTTGTGTTTGCCACAGGAGCAATGTACTTCGCTATGC 1461
Query 1363 TACTTGTTGGCTGGAACATTCATCATTCCATGAAAAAGTGGACCATTGACGTTGGG-TGG 1421
|||| | || ||||||| ||||||| |||||||||||||||| |||||||| ||| |||
Sbjct 1462 TACTCATCGGTTGGAACACTCATCATCCCATGAAAAAGTGGACGATTGACGT-GGGATGG 1520
Query 1422 ACAAGTACTTGGGTAAGGATAGTGAACGAATGGCTCGCGGTTGGCGTTTATATTTGGATG 1481
|||||||||||||||||| | |||||||| ||||| |||||| |||| || |||||||||
Sbjct 1521 ACAAGTACTTGGGTAAGGGTTGTGAACGAGTGGCTTGCGGTTTGCGTATACATTTGGATG 1580
Query 1482 TTGGTGGCTCC 1492
|||||||||||
Sbjct 1581 TTGGTGGCTCC 1591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86495539035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5