BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497058
Length=913
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13270.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1077 0.0
> AT4G13270.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr4:7731189-7733201
FORWARD LENGTH=1038
Length=1038
Score = 1077 bits (583), Expect = 0.0
Identities = 689/738 (93%), Gaps = 15/738 (2%)
Strand=Plus/Plus
Query 1 CTAATTCTCACGAAAAAACCCCAAAACTTCCAAAATCAACTTTTCACCCCC-AAGAACTC 59
||||||||||||||||| ||||| ||||||||||||||||||||||||||| || |||||
Sbjct 1 CTAATTCTCACGAAAAAGCCCCATAACTTCCAAAATCAACTTTTCACCCCCAAAAAACTC 60
Query 60 ATCTTCTTCG-T-------T-GAAA-CGATAATGGCGTCGTCGAAGCACGAAGACTACGG 109
|||||||||| | | |||| ||||||||||||||||||||||||||||||| ||
Sbjct 61 ATCTTCTTCGTTGAAACGATCGAAATCGATAATGGCGTCGTCGAAGCACGAAGACTATGG 120
Query 110 CGTTCCTTACACACCTCTTCCTTCATCACAACCATCTCAAACCGTAATCCTTCTAACTCC 169
| | ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 121 CATCCCTTACACACCTCTTCCATCATCACAACCATCTCAATCCGTAATCCTTCTAACTCC 180
Query 170 TTATCGCCGTAACCGTTAtccctcaatcctccgtaacctccgttgttctctcctcttcac 229
|||||||||| ||||| ||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 181 TTATCGCCGTCACCGTCGTCCTTCACTTCTCCGTAACCTCCGTTGTTCTCTCCTCTTCAC 240
Query 230 cgccgcaatcctcctcctctccGCCGCCGTTTACTTACTCTACCCTTCAGATCCAGACAT 289
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGCCGTAATCCTCCTCCTCTCCGCCGCCGTTTACTTACTCTACCCTTCAGATCCAGACAT 300
Query 290 CACCGTCTCACGAATCAATCTCAACCACATAAGCGTCGTAGATTCACACAAAATCGCTTT 349
||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 301 CACTGTCTCACGAATCAATCTCAACCACATAAGCGTCGTTGATTCTCATAAAATCGCTTT 360
Query 350 AGATCTCTCGTTTTCACTCACAATCAAAGTTCGAAACCGCGACTTCTTCTCTCTAGATTA 409
||||||||||||||| ||||||||||||||||||||||| || |||||||| || |||||
Sbjct 361 AGATCTCTCGTTTTCGCTCACAATCAAAGTTCGAAACCGAGATTTCTTCTCACTTGATTA 420
Query 410 CGATTCGCTTGTTGTTTCGATTGGGTATAGAGGAAGAGAGTTAGGGCTTGTGAAGTCTAA 469
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 421 CGATTCGCTTGTTGTTTCGATTGGGTATAGAGGAAGAGAGTTAGGTCTTGTTAAGTCTAA 480
Query 470 AGGTGGACATCT-AAAGGCTCGTGCTAGCTCTTATATTAATGCTACGCTTGAGCTTGATG 528
|||||||||||| |||| |||||| ||||||||||||| |||||||||||||||||||||
Sbjct 481 AGGTGGACATCTTAAAG-CTCGTGATAGCTCTTATATTGATGCTACGCTTGAGCTTGATG 539
Query 529 GTCTTGAGGTTGTTCATGATGTGATTTATCTGATTGGTGATTTGGCTAAAGGTGTTATTC 588
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 540 GTCTTGAGGTTGTTCATGATGTTATTTATTTGATTGGTGATTTGGCTAAAGGTGTTATTC 599
Query 589 CTTTTGATACTATTGCTCAAGTTAAAGGTGATCTTGGTGTTCTCTTGTTCCAA-ATCCCT 647
||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 600 CTTTTGATACTATTGCTCAAGTTCAAGGTGATCTTGGTGTTCTCTTGTTC-AATATCCCA 658
Query 648 ATTCAGGGTAAAGTGTCGTGTGAGGTATATGTTAATGTTAACAACCAGAAAATTTCACAC 707
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 659 ATTCAGGGTAAAGTGTCGTGTGAGGTGTATGTTAATGTTAACAACCAGAAAATTTCACAC 718
Query 708 CAAGATTGTCGTCGTAAG 725
|||||||||| |||||||
Sbjct 719 CAAGATTGTCATCGTAAG 736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44607922536
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5