BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497061
Length=396
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13263.1 | Symbols: | Protein of unknown function (DUF784) ... 588 1e-167
AT5G35405.1 | Symbols: | Protein of unknown function (DUF784) ... 582 7e-166
AT4G13261.1 | Symbols: | Protein of unknown function (DUF784) ... 560 3e-159
AT4G09470.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 560 3e-159
AT1G47470.1 | Symbols: | Protein of unknown function (DUF784) ... 350 7e-96
> AT4G13263.1 | Symbols: | Protein of unknown function (DUF784)
| chr4:7711064-7711620 FORWARD LENGTH=557
Length=557
Score = 588 bits (318), Expect = 1e-167
Identities = 372/398 (93%), Gaps = 4/398 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCGTCCAATTTTTTCCCAGGAGGTACATGAAGATGTAGTCATATCTCCAACTCCA 60
|||||| |||||||||| ||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 52 ATGGCTTGTCCAATTTTCTCCCAGGAGATACATGAAGATGTAGCCATATCTCCAACTCCA 111
Query 61 TTCGAAGAAGCTAATTCACCCGCAATGGAATATGACATGAAGCTTCCCCATTACTCGCAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 TTCGAAGAAGCTAATTCACCCGCAATGGAATATGACATGAAGCTTCCCCATTACTCGCAA 171
Query 121 AAAGAGATT-GATTTTCTTAAGGCTTGCGCTGAAAAGCCGAGCTCCATATGCGGAGGTGA 179
|||| | || ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 172 AAAGTG-TTCGATTTTCTTGAGACTTGCGCTGAAAAGCCGAGCTCCATATGCGGAGGTGA 230
Query 180 GATTTTCCAGAACGTGTTGGATGAGAAAAACCT-AGTGACAGATGAATGTTGTCGTGATA 238
||||||||||||||||||||||| || ||||| |||||||||| |||||||||||||||
Sbjct 231 GATTTTCCAGAACGTGTTGGATGC-AACAACCTTAGTGACAGATAAATGTTGTCGTGATA 289
Query 239 TATTGAAGATTGGCAAAGATTGCCATCTCGGATTGATTAAAATCATATTCTCGTCGTATG 298
|||||||||||||||||||||||||||| || |||||||||||| | ||||| |||||||
Sbjct 290 TATTGAAGATTGGCAAAGATTGCCATCTTGGTTTGATTAAAATCTTCTTCTCATCGTATG 349
Query 299 AGTATAAAAATATTGCATCTATTCCAAGAAGCAAACAAACATGGAACGATTGTGTCCGTA 358
| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 350 AATATAAAAATATTGCATCTATTCCAAGAAGCAAACAGACATGGAACGATTGTTTCCGTA 409
Query 359 GAGTTGGGAGCAAGATTGGAGCTCCGGTCTCTTTTGAA 396
||||||| ||||||||||| | |||||||||| |||||
Sbjct 410 GAGTTGGAAGCAAGATTGGTGTTCCGGTCTCTATTGAA 447
> AT5G35405.1 | Symbols: | Protein of unknown function (DUF784)
| chr5:13604162-13604726 REVERSE LENGTH=565
Length=565
Score = 582 bits (315), Expect = 7e-166
Identities = 372/399 (93%), Gaps = 6/399 (2%)
Strand=Plus/Plus
Query 1 ATGGCTCGTCCAATTTTTTCCCAGGAGGTACATGAAGATGTAGTCATATCTCCAACTCCA 60
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 ATGGCTTGTCCAATTTTATCCCAGGAGGTACATGAAGATGTAGTCATATCTCCAACTCCA 111
Query 61 TTCGAAGAAGCTAATTCACCCGCAATGGAATATGACATGAAGCTTCCCCATTACTCGCAA 120
|||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 112 TTCGAAAAAGCTATTTCACCCGCAATGGAATATGAAATGAAGCTTCCCCATTACTCGCAA 171
Query 121 AAAGAGAT-TGATTTTCTTA-AGGCTTGCGCTGAAAAGCCGAGCTCCATATGCGGAGGTG 178
||| || | |||||||| || ||||||||| |||||||||||||||||||||||||||||
Sbjct 172 AAACAG-TATGATTTTC-TAGAGGCTTGCGTTGAAAAGCCGAGCTCCATATGCGGAGGTG 229
Query 179 AGATTTTCCAGAACGTGTTGGATGAGAA-AAACCTAGTGACAGATGAATGTTGTCGTGAT 237
||||||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||
Sbjct 230 AGATTTTCCAGAACGTGTTGGATGA-AACAAACCTAGTGACAGATAAATGTTGTCGTAAT 288
Query 238 ATATTGAAGATTGGCAAAGATTGCCATCTCGGATTGATTAAAATCATATTCTCGTCGTAT 297
||||||||||||||||||||||||||||| |||||||| |||||| ||||||| ||||||
Sbjct 289 ATATTGAAGATTGGCAAAGATTGCCATCTTGGATTGATGAAAATCTTATTCTCATCGTAT 348
Query 298 GAGTATAAAAATATTGCATCTATTCCAAGAAGCAAACAAACATGGAACGATTGTGTCCGT 357
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 349 GAATATAAAAATATTGCATCTATTCCAAGAAGCAAACAGACATGGAACGATTGTCTTCGT 408
Query 358 AGAGTTGGGAGCAAGATTGGAGCTCCGGTCTCTTTTGAA 396
|||||||| ||||||||||| | ||| ||||||||||||
Sbjct 409 AGAGTTGGAAGCAAGATTGGTGTTCCAGTCTCTTTTGAA 447
> AT4G13261.1 | Symbols: | Protein of unknown function (DUF784)
| chr4:7708598-7709047 FORWARD LENGTH=450
Length=450
Score = 560 bits (303), Expect = 3e-159
Identities = 368/399 (92%), Gaps = 6/399 (2%)
Strand=Plus/Plus
Query 1 ATGGCTCGTCCAATTTTTTCCCAGGAGGTACATGAAGATGTAGTCATATCTCCAACTCCA 60
|||||| |||||||||| ||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 52 ATGGCTTGTCCAATTTTCTCCCAGGAGATACATGAAGATGTAGCCATATCTCCAACTCCA 111
Query 61 TTCGAAGAAGCTAATTCACCCGCAATGGAATATGACATGAAGCTTCCCCATTACTCGCAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 TTCGAAGAAGCTAATTCACCCGCAATGGAATATGACATGAAGCTTCCCCATTACTCGCAA 171
Query 121 AAAGAG-ATTGATTTTCTTA-AGGCTTGCGCTGAAAAGCCGAGCTCCATATGCGGAGGTG 178
||| || || |||||||| | ||||||||| |||||||||||||||||||||||||||||
Sbjct 172 AAACAGTAT-GATTTTCT-AGAGGCTTGCGTTGAAAAGCCGAGCTCCATATGCGGAGGTG 229
Query 179 AGATTTTCCAGAACGTGTTGGATGAGAAAAACCT-AGTGACAGATGAATGTTGTCGTGAT 237
||||||||||||||||| |||||| || ||| | |||||||||| ||||||||||||||
Sbjct 230 AGATTTTCCAGAACGTGCTGGATGC-AACAACTTTAGTGACAGATAAATGTTGTCGTGAT 288
Query 238 ATATTGAAGATTGGCAAAGATTGCCATCTCGGATTGATTAAAATCATATTCTCGTCGTAT 297
||||||||||||||||||||||| ||||| ||||||||||||||| | ||||| ||||||
Sbjct 289 ATATTGAAGATTGGCAAAGATTGTCATCTTGGATTGATTAAAATCTTCTTCTCATCGTAT 348
Query 298 GAGTATAAAAATATTGCATCTATTCCAAGAAGCAAACAAACATGGAACGATTGTGTCCGT 357
|| |||||||||||||||||||||||||||| |||||| ||||||||||||||| | |||
Sbjct 349 GAATATAAAAATATTGCATCTATTCCAAGAAACAAACAGACATGGAACGATTGTCTTCGT 408
Query 358 AGAGTTGGGAGCAAGATTGGAGCTCCGGTCTCTTTTGAA 396
|||||||| ||||||||||| | ||||||||||| ||||
Sbjct 409 AGAGTTGGAAGCAAGATTGGTGTTCCGGTCTCTTCTGAA 447
> AT4G09470.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein [pseudogene] | chr4:6010997-6011446 REVERSE
LENGTH=450
Length=450
Score = 560 bits (303), Expect = 3e-159
Identities = 367/398 (92%), Gaps = 4/398 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCGTCCAATTTTTTCCCAGGAGGTACATGAAGATGTAGTCATATCTCCAACTCCA 60
|||||| |||||||||| ||| |||| |||||||||| |||| ||||||||||||||||
Sbjct 52 ATGGCTTGTCCAATTTTCTCCTAGGAAATACATGAAGACGTAGCCATATCTCCAACTCCA 111
Query 61 TTCGAAGAAGCTAATTCACCCGCAATGGAATATGACATGAAGCTTCCCCATTACTCGCAA 120
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 112 TTCGAAGAAGCTAATTCCCCCGCAATGGAATATGACAAGAAGCTTCCCCATTACTCGCAA 171
Query 121 AAAGAGATT-GATTTTCTTAAGGCTTGCGCTGAAAAGCCGAGCTCCATATGCGGAGGTGA 179
|||| | || ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 172 AAAGTG-TTCGATTTTCTTGAGACTTGCGCTGAAAAGCCGAGCTCCATATGCGGAGGTGA 230
Query 180 GATTTTCCAGAACGTGTTGGATGAGAAAAACC-TAGTGACAGATGAATGTTGTCGTGATA 238
|||||||||||| |||||||||| || |||| ||||||||||| |||||||||||||||
Sbjct 231 GATTTTCCAGAATGTGTTGGATGC-AACAACCCTAGTGACAGATAAATGTTGTCGTGATA 289
Query 239 TATTGAAGATTGGCAAAGATTGCCATCTCGGATTGATTAAAATCATATTCTCGTCGTATG 298
|||||||||||||||||||||| ||||| ||||||||||||||| | ||||| |||||||
Sbjct 290 TATTGAAGATTGGCAAAGATTGTCATCTTGGATTGATTAAAATCTTCTTCTCATCGTATG 349
Query 299 AGTATAAAAATATTGCATCTATTCCAAGAAGCAAACAAACATGGAACGATTGTGTCCGTA 358
| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 350 AATATAAAAATATTGCATCTATTCCAAGAAGCAAACAGACATGGAACGATTGTTTCCGTA 409
Query 359 GAGTTGGGAGCAAGATTGGAGCTCCGGTCTCTTTTGAA 396
||||||||||||||||||| | |||||||||| |||||
Sbjct 410 GAGTTGGGAGCAAGATTGGTGTTCCGGTCTCTATTGAA 447
> AT1G47470.1 | Symbols: | Protein of unknown function (DUF784)
| chr1:17414611-17415132 REVERSE LENGTH=522
Length=522
Score = 350 bits (189), Expect = 7e-96
Identities = 300/352 (85%), Gaps = 13/352 (4%)
Strand=Plus/Plus
Query 56 CTCCATTCGAAGAAGCTAATTCACCCGCAATGGAATATGACATGAAGCTT-C-C-CCATT 112
||||||||||||||||| |||||||||||||||||||||| | | ||||| | | |||||
Sbjct 167 CTCCATTCGAAGAAGCTGATTCACCCGCAATGGAATATGATAGGGAGCTTGCTCACCATT 226
Query 113 ACTCGCAAAAAGAGATTGATTTTCTTAAGGCTTGCGCTGAAAAGCCGAGCTCCATATGCG 172
||||||| ||| || | ||||||||| |||||||| |||||||||| ||||| | |||||
Sbjct 227 ACTCGCATAAACAGCTCGATTTTCTTGAGGCTTGCTCTGAAAAGCCAAGCTCAAAATGCG 286
Query 173 GAGGTGAGATTTTCCAGAACGTGTTGGATGAGA-AAAACCTAGTGACAGATGAATGTTGT 231
|| |||| ||||| ||||| |||| ||||||| | || | | |||||||||||||||
Sbjct 287 GAAATGAGGTTTTCAAGAACATGTTAGATGAGACAGTGCC-AATTACAGATGAATGTTGT 345
Query 232 CGTGATATATTGAAGATTGGCAAAGATTGCCATCTCGGATTGATTAAAATCATATTCTCG 291
||||||||||||||||| || ||||||||||||||||||||| ||||| |||||||| |
Sbjct 346 CGTGATATATTGAAGATCGGAAAAGATTGCCATCTCGGATTGGTTAAACTCATATTCGCC 405
Query 292 TCGTATGAGTATAAAAATATTGCATCTA------TTCCAA-GAAGCAAACAAACATGGAA 344
| |||||||||||||||| ||||||| |||||| || ||||||||||||||||
Sbjct 406 ACATATGAGTATAAAAATAAAGCATCTAAAGGCATTCCAAAGA-GCAAACAAACATGGAA 464
Query 345 CGATTGTGTCCGTAGAGTTGGGAGCAAGATTGGAGCTCCGGTCTCTTTTGAA 396
||| |||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct 465 CGAATGTGTCTTTAGAGTAGGGAGCAAGATTGGTGCTCCGGTCTCTTTTGAA 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18699602628
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5