BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497065
Length=1754
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13250.1 | Symbols: NYC1 | NAD(P)-binding Rossmann-fold supe... 2756 0.0
> AT4G13250.1 | Symbols: NYC1 | NAD(P)-binding Rossmann-fold superfamily
protein | chr4:7684234-7686876 REVERSE LENGTH=1859
Length=1859
Score = 2756 bits (1492), Expect = 0.0
Identities = 1677/1764 (95%), Gaps = 22/1764 (1%)
Strand=Plus/Plus
Query 1 CTTCTTCTTCCGATCTCTCTATTTAACGTCTTCGACGAATCCGAACCTAAAAAATACCTA 60
||||||| ||||||| ||||||||||||||||||||||||||||| || ||||||| |||
Sbjct 15 CTTCTTCCTCCGATCACTCTATTTAACGTCTTCGACGAATCCGAAGCTGAAAAATATCTA 74
Query 61 ACAATCAATCTTTTGGGACCCTAAAATACCATAAAAAGCTCTTTCCTTTATCTTGTTTTC 120
|||||| |||||||||| ||| | | ||||||||| ||| ||||||||||||||
Sbjct 75 ACAATCTATCTTTTGGGTCCC-----T---A-AAAAAGCTCCTTCGTTTATCTTGTTTTC 125
Query 121 TAAGTTATC-TTTTGCATGAGTTTCAAAG-----C-TTATCTCACTCTTCTTCCATAGCT 173
||||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||
Sbjct 126 TAAGTTATCTTTTTGTATGAGTTTCAAAGCTTATCATTATCTCACTCTTCTTCCATAGCT 185
Query 174 ATGACTACTTTAACGAAGATTCAAGTGTACCCACAAGTCTTGGAGCACCGTCTCTTCTTC 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 ATGACTACTTTAACGAAGATTCAAGTGTACCCACAAGTCTTGGAGCACCGTCTCTTCTTC 245
Query 234 AGAGATCCGATACGGGTCGGGTCAAGATTTACTTGTAGAGAACGTAGTAATAGGGTTTCT 293
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 246 AGAGATCCGATACGGGTCGGGTCAAGATTGACTTGTAGAGAACGTAGTAATAGGGTTTAT 305
Query 294 GTGCATCGGTGTGAGAAAAAAGTTGAAAGGAAGAGAAAAGTTGAGAAATTTAAAGGAAAT 353
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 306 GTGCATCGGTGTGAGAAAAAAGTTGAAAGAAAGAGAAAAGTTGAGAAATTTAAGGGAAAT 365
Query 354 GGGTTGTGGGATTCTTTGAAATCTGGCTTTTTAGGTTTTAGTAAATTAGGGTTCTTGTCT 413
|||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 366 GGGTCGTGGGATTCTTTGAAATCTGGGTTTTTAGGGTTTAGTAAATTAGGGTTCTTGTCT 425
Query 414 AAAGATGAGTATAATCAGAAAGTTGAAAACTTGGAGACGGTTTTCTCTTCGATTGCTGTT 473
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 426 AAAGATGAGTATAATCAGAAAGTTGAAAACTTGGAGATGGTTTTCTCTTCGGTTGCTGTT 485
Query 474 CAAATTGCGAGATACATTGTGACGATGACAAGCACTGGAGCTATTCTTTTGATTGGGTTT 533
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 486 CAAATTGCGAGATACATTGTGACGATGACAAGTACTGGAGCTATTCTTTTGATTGGGTTT 545
Query 534 CAATTATCAGGTGGGGATAGTTCGATGAACTCATTGGTTTGGTATAGTTGGCTTGGTGGA 593
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 CAATTATCAGGTGGAGATAGTTCGATGAACTCATTGGTTTGGTATAGTTGGCTTGGTGGA 605
Query 594 GTTATCATTGGAACCATGACTGGTGCTAACATGGTTTTAGAAGATCATTACCGAGCCGGT 653
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 606 ATTATCATTGGAACCATGACTGGTGCTAACATGGTTTTGGAAGATCATTATCGAGCCGGT 665
Query 654 CCCCGGAATGTTGTTATAACCGGAAGCACGAGGGGACTTGGGAAAGCTCTTGCTAGAGAG 713
|| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 666 CCACGGAATGTTGTTATAACCGGAAGCACTAGGGGACTAGGGAAAGCTCTTGCTAGAGAG 725
Query 714 TTTCTTCTCTCTGGAGACAGAGTCATTGTCACATCTCGCAGTTCTGAATCTGTTGATATG 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TTTCTTCTCTCTGGAGACAGAGTCATTGTCACATCTCGCAGTTCTGAATCTGTTGATATG 785
Query 774 ACTGTCAAAGAGCTAGAGCAAAATCTCAAAGAGATTATGAGTAATGCTAGCGAGTCTGCT 833
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 786 ACTGTCAAAGAGCTAGAGCAAAATCTCAAAGAGATTATGAGTAACGCTAGCGAGTCAGCT 845
Query 834 AAGAA-GAAATTGAGTGATGCTAAGGTAGTTGGTATTGCCTGTGATGTTTGCAAACCCGA 892
| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 A-GAAAGAAACTGAGTGATGCTAAGGTAGTTGGTATTGCCTGTGATGTTTGCAAACCCGA 904
Query 893 AGACGTTGAGAAGCTGTCGAATTTCGCTGTAAAAGAGCTTGGTTCCATCAACATATGGAT 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 AGACGTTGAGAAGCTGTCGAATTTCGCTGTAAAAGAGCTTGGTTCCATCAACATATGGAT 964
Query 953 AAACAATGCTGGTACTAACAAAGGTTTTAGACCGCTACTCGAGTTCACTGAAGAAGATAT 1012
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 965 AAACAATGCTGGTACTAACAAAGGTTTTAGACCGCTACTCGAGTTCACGGAAGAAGATAT 1024
Query 1013 CACACAGATTGTCTCCACAAATTTGATTGGATCAATTCTATGCACACGAGGGGCGATGGA 1072
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1025 CACACAGATTGTCTCCACAAATTTGATTGGATCAATTCTATGTACACGAGGGGCTATGGA 1084
Query 1073 TGTGATGAGCAGACAGCACAATGGTGGACACATCTTTAACATGGATGGTGCTGGTTCTGG 1132
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1085 TGTGATGAGCAGACAGCACAGTGGTGGACACATCTTTAACATGGATGGTGCTGGCTCTGG 1144
Query 1133 GGGTTCTAGCACTCCTCTCACGGCCGTATATGGGTCAACAAAATGTGGACTTAGGCAATT 1192
||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 1145 AGGTTCAAGTACTCCTCTCACTGCCGTATATGGTTCAACAAAATGTGGACTTAGGCAGTT 1204
Query 1193 TCATGGGTCTATTGTGAAAGAAAGCCAAAAAACAAACGTTGGCCTGCACACTGCATCCCC 1252
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1205 TCATGGGTCTATAGTGAAAGAAAGCCAAAAAACAAACGTTGGCCTTCACACTGCATCCCC 1264
Query 1253 GGGCATGGTTCTGACCGAACTTCTTCTTAGTGGTTCGAGCATAAAAAACAAGCAGATGTT 1312
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1265 TGGCATGGTTCTGACAGAACTTCTTCTCAGTGGTTCGAGCATTAAAAACAAGCAGATGTT 1324
Query 1313 TAACATAATCTGCGAACTACCAGAGACAGTAGCTAGAACGTTGGTACCACGAATGCGAGT 1372
|||||||||||| || || || ||||||||||||||||| ||||||||||||||||||||
Sbjct 1325 TAACATAATCTGTGAGCTTCCTGAGACAGTAGCTAGAACTTTGGTACCACGAATGCGAGT 1384
Query 1373 TGTGAAAGGTTCGGGAAAAGCCGTCAATTACCTGACTCCTCCTCGGATATTGTTAGCTAT 1432
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1385 TGTGAAAGGTTCGGGAAAAGCCGTCAATTACCTAACTCCTCCTCGGATATTGTTAGCTAT 1444
Query 1433 TGTCACTTCCTGGCTCAGGAGAGGCCGATGGTTCGATGACCAAGGACGGGCGTTATATGC 1492
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1445 TGTCACTTCCTGGCTAAGGAGAGGCCGATGGTTTGATGACCAAGGACGGGCGTTATATGC 1504
Query 1493 AGCGGAAGCAGACAGACTAAGAAACTGGGCAGAGAACAGGACGAGGTTGTCGTTAACGGA 1552
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1505 AGCAGAAGCAGATAGACTAAGGAACTGGGCAGAGAACAGGACGAGGTTGTCGTTAACAGA 1564
Query 1553 CGCGATGGAGATGTACACAGAGAATACATGGGTCTCTGTTTTCTCTCTTTCTGTTGTTTG 1612
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1565 CGCGATGGAGATGTATACAGAGAATACTTGGGTCTCTGTTTTCTCTCTTTCTGTTGTTTG 1624
Query 1613 CGCTTTCATCATCTTACAAAGCACAACACCTAGCTCTTTTCCAGGCACATAACAA-CATC 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1625 CGCTTTCATCATCTTACAAAGCACAACACCTAGCTCTTTTCCAGGCACATAACAAACATC 1684
Query 1672 TTTCACGGATGTGTTT-AAGAAAAATGTAAACGTACATGTTATGTATACATAAAAGATAT 1730
|| | ||||||||||| ||||||| ||||||||||||||||||||||| | |||| ||||
Sbjct 1685 TTCCTCGGATGTGTTTTAAGAAAATTGTAAACGTACATGTTATGTATA-A-AAAACATAT 1742
Query 1731 ATATAACAGAACCGATTTGTTCAT 1754
||||||||||||||||||||||||
Sbjct 1743 ATATAACAGAACCGATTTGTTCAT 1766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86746541760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5