BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg497072 Length=486 Score E Sequences producing significant alignments: (Bits) Value AT4G13215.1 | Symbols: | pseudogene, leucine-rich repeat trans... 366 9e-101 > AT4G13215.1 | Symbols: | pseudogene, leucine-rich repeat transmembrane protein kinase -related, similar to leucine-rich repeat transmembrane protein kinase, putative; blastp match of 44% identity and 2.7e-12 P-value to GP|28071311|dbj|BAC56000.1||AP004623 putative leucine-rich repeat transmembrane protein kinase {Oryza sativa (japonica cultivar-group)} | chr4:7673224-7673760 REVERSE LENGTH=537 Length=537 Score = 366 bits (198), Expect = 9e-101 Identities = 338/401 (84%), Gaps = 28/401 (7%) Strand=Plus/Minus Query 102 ACTACAATCCCGGTCATTAAACCTATCACAAGACCAGCAACAGCAGTTGTTCTCAACCTA 161 |||||||| | |||||||||||||||||||||||||||||||||||||| || ||| ||| Sbjct 389 ACTACAATACTGGTCATTAAACCTATCACAAGACCAGCAACAGCAGTTGCTCGCAAACTA 330 Query 162 GAGGAACCTAGACATGGTTTTAAAGGTAACCCACAAAGACTTGGACTGTTCCCTTCAAAG 221 ||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||| Sbjct 329 GAGGAACCTAGACCGGGTTTTATAGCTAACCCACAAAGACTTGGACTGTTCCCTTCAAAG 270 Query 222 ACTTCAGCCCCAAATTTTTATCCACCAAAACTTGGCAATACCCCAGTGAAGTTATTGTCA 281 | ||| |||| |||||||||||||||| ||||| |||||||||||||||||| Sbjct 269 -----A----CAAGTTTTAATCCACCAAAACTTGGTAATACTCCAGTGAAGTTATTGTCA 219 Query 282 GAAAGG-TTAAGTTTTTCGAGTTTTAACAGAGTCAATCTC-TCAAGAACAATACTCTCAA 339 |||||| ||| ||||||||||||||||||||||||||| | ||| |||||| || ||||| Sbjct 218 GAAAGGTTTATGTTTTTCGAGTTTTAACAGAGTCAATCCCCTCAGGAACAACACCCTCAA 159 Query 340 ACATGTTACTTGACAAATCAAGCTCATATAGACCT---T-TAAGCTT-GGTTATAAACTC 394 ||||||||||||||||||||||||| | || || | | ||| || || | || | | Sbjct 158 ACATGTTACTTGACAAATCAAGCTCCTTTAAACTTGGGTATAAACTCAGGG-A-AACCAC 101 Query 395 -AGGGAA------ACCACCAAAATCAAGAGCTACAAGTACAATCTAGA-AACGCAGGCTC 446 || | |||||||||||||||| ||||||||| ||||| | || |||||||| Sbjct 100 CAGATATGTTTTTACCACCAAAATCAAGAACTACAAGTAGAATCTGGCGAA-GCAGGCTC 42 Query 447 AGGAAA-TCCCCAAACAACAAACATTCATGAACCCTGAAGG 486 |||||| |||||||||||||||| ||||||||||||||||| Sbjct 41 AGGAAAATCCCCAAACAACAAACTTTCATGAACCCTGAAGG 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23157941767 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5