BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg497072

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13215.1 | Symbols:  | pseudogene, leucine-rich repeat trans...   366    9e-101


> AT4G13215.1 | Symbols:  | pseudogene, leucine-rich repeat transmembrane 
protein kinase -related, similar to leucine-rich 
repeat transmembrane protein kinase, putative; blastp match 
of 44% identity and 2.7e-12 P-value to GP|28071311|dbj|BAC56000.1||AP004623 
putative leucine-rich repeat transmembrane protein 
kinase {Oryza sativa (japonica cultivar-group)} | chr4:7673224-7673760 
REVERSE LENGTH=537
Length=537

 Score =  366 bits (198),  Expect = 9e-101
 Identities = 338/401 (84%), Gaps = 28/401 (7%)
 Strand=Plus/Minus

Query  102  ACTACAATCCCGGTCATTAAACCTATCACAAGACCAGCAACAGCAGTTGTTCTCAACCTA  161
            |||||||| | |||||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct  389  ACTACAATACTGGTCATTAAACCTATCACAAGACCAGCAACAGCAGTTGCTCGCAAACTA  330

Query  162  GAGGAACCTAGACATGGTTTTAAAGGTAACCCACAAAGACTTGGACTGTTCCCTTCAAAG  221
            |||||||||||||  ||||||| || ||||||||||||||||||||||||||||||||||
Sbjct  329  GAGGAACCTAGACCGGGTTTTATAGCTAACCCACAAAGACTTGGACTGTTCCCTTCAAAG  270

Query  222  ACTTCAGCCCCAAATTTTTATCCACCAAAACTTGGCAATACCCCAGTGAAGTTATTGTCA  281
                 |    ||| |||| |||||||||||||||| ||||| ||||||||||||||||||
Sbjct  269  -----A----CAAGTTTTAATCCACCAAAACTTGGTAATACTCCAGTGAAGTTATTGTCA  219

Query  282  GAAAGG-TTAAGTTTTTCGAGTTTTAACAGAGTCAATCTC-TCAAGAACAATACTCTCAA  339
            |||||| ||| ||||||||||||||||||||||||||| | ||| |||||| || |||||
Sbjct  218  GAAAGGTTTATGTTTTTCGAGTTTTAACAGAGTCAATCCCCTCAGGAACAACACCCTCAA  159

Query  340  ACATGTTACTTGACAAATCAAGCTCATATAGACCT---T-TAAGCTT-GGTTATAAACTC  394
            ||||||||||||||||||||||||| | || || |   | ||| ||  ||  | || | |
Sbjct  158  ACATGTTACTTGACAAATCAAGCTCCTTTAAACTTGGGTATAAACTCAGGG-A-AACCAC  101

Query  395  -AGGGAA------ACCACCAAAATCAAGAGCTACAAGTACAATCTAGA-AACGCAGGCTC  446
             ||  |       |||||||||||||||| ||||||||| ||||| |  || ||||||||
Sbjct  100  CAGATATGTTTTTACCACCAAAATCAAGAACTACAAGTAGAATCTGGCGAA-GCAGGCTC  42

Query  447  AGGAAA-TCCCCAAACAACAAACATTCATGAACCCTGAAGG  486
            |||||| |||||||||||||||| |||||||||||||||||
Sbjct  41   AGGAAAATCCCCAAACAACAAACTTTCATGAACCCTGAAGG  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23157941767


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5