BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497075
Length=2060
Score E
Sequences producing significant alignments: (Bits) Value
AT2G12420.1 | Symbols: | transposable element gene | chr2:5027... 1724 0.0
AT4G05505.1 | Symbols: | transposable element gene | chr4:2785... 1709 0.0
AT4G06570.1 | Symbols: | transposable element gene | chr4:3518... 1535 0.0
AT4G06627.1 | Symbols: | transposable element gene | chr4:3604... 1513 0.0
AT1G38140.1 | Symbols: | transposable element gene | chr1:1430... 449 4e-125
AT4G08598.1 | Symbols: | transposable element gene | chr4:5480... 244 2e-63
> AT2G12420.1 | Symbols: | transposable element gene | chr2:5027376-5029321
REVERSE LENGTH=1946
Length=1946
Score = 1724 bits (933), Expect = 0.0
Identities = 1282/1438 (89%), Gaps = 74/1438 (5%)
Strand=Plus/Plus
Query 672 TAT-TGGTAAGCTGAGTAGATTAGG-TTTAGGGTTAATATTGAGTAATGTGTGTGTGTAT 729
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 459 TATATGGTAAGCTGAGTAGATTAGGTTTTAGGGTTAATATTGAGTAATGTGTGTGTATAT 518
Query 730 --CTGCTAAGTAGATTAGGTGTGTATATGGTAAGCTGAGTATATTAGGTTTAGGGTTAAT 787
|||||||| |||| |||||||||||||||||||| ||| |||| |||||||| ||||
Sbjct 519 AGATGCTAAGTTGATTGGGTGTGTATATGGTAAGCTGTGTAGATTACGTTTAGGGGTAAT 578
Query 788 ATTGAGTAATATGTGTGTGTATGGTAAGCTGAGTAGATTTGTATAAAG-CTTGCTAATTG 846
|||||||||||||||| ||||| | || || || | ||| || | | ||| |||||||
Sbjct 579 ATTGAGTAATATGTGTATGTAT-AT-AGATG-CTA-AGTTG-ATTAGGTCTT-CTAATTG 632
Query 847 GTTTATGTAATTGTAGGTTTGGTCACGACAATGG----TAAGCTGACCCGGAAGATCACA 902
|||||||||||||||| ||||||||||||||||| |||| ||||| ||||||| ||
Sbjct 633 GTTTATGTAATTGTAGATTTGGTCACGACAATGGTAATTAAGTTGACCTGGAAGATTGCA 692
Query 903 AAGGTATTCACAAACAAGTTTAATGGACCA-TATTACAATTGGAGCTGTGTACCTACTGA 961
||||||||||||||||||||| |||| ||| | ||||| ||||||||||||| |||||||
Sbjct 693 AAGGTATTCACAAACAAGTTTGATGGGCCATTTTTACAGTTGGAGCTGTGTATCTACTGA 752
Query 962 AAGAAGACACAAATACTTCCTCGAATTCGCGGT-AA-----A-------TTAA-C--TT- 1004
|| |||||| |||||||||||||||||| | || || | |||| | ||
Sbjct 753 AA-AAGACATAAATACTTCCTCGAATTCAC-GTAAACTTCTATCTCCTGTTAATCTTTTA 810
Query 1005 CTATTGTCTGTATCCATTTGGTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCT 1064
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 811 CTATTGTCTATATCCATTTGGTTTGGTTTCGTTGTTTGATCACTAACATCAAACTCTCCT 870
Query 1065 C-TTGTTTTGTAGAAAACACACACATGGCATCCATCACTGACCGGTGTAATTGAAGAGAA 1123
| || |||||||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 871 CTTTTTTTTGTAGAAAACACACACATGACATCCATCACTAACCGGTATAATTGAAGAGAA 930
Query 1124 ATTCTACAAAATATGTCAGCTGCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAACG 1183
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 931 ATTCTACAAAATATGTTAGCTGCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAATG 990
Query 1184 AGCCACTGAG-AGACCGCCATGGATTG-AGAAGACATTGTGGAAGGAAATGTGTGAGTAT 1241
||||| | || | |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 991 AGCCAATTAGCA-ACCGCCATGGATTGAAG-AGACATTGTGGAAGGAAATGTGTGAGTAT 1048
Query 1242 TGGGACACAGAAGAAG-CACTTGCCAAGAGTT-CAACCACATCAGCAGCTCGAATGTCTG 1299
|| ||||||||||||| || |||||||||||| ||| |||||||||||||||||||||||
Sbjct 1049 TGAGACACAGAAGAAGCCA-TTGCCAAGAGTTCCAATCACATCAGCAGCTCGAATGTCTG 1107
Query 1300 ACCGTAATGGTCTTGGTCCTCACAAGCATGTATCGGGGCCAAAGTCTTTCTTACAAATCG 1359
||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1108 ACCGTAATGGTCTTGGTTCTCACAAGCATGTATCAGGGCCAAAGTCTTTCTTATAAATCG 1167
Query 1360 AGCAAGAGATGGTAAGTTACATCAAGCACTCTTGTTTATTTACATAATGGTTTTCCTTAA 1419
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1168 AGCAAGAGATGGTAAGTTACATCAAGCACTCTTGTTTATTTACATAATGTTTTTTCTTAA 1227
Query 1420 GAATTTGAAtt-tt-ttt-GTGAACAACATTTCAGGAAATTGAGCTGGGAAGACCACCTA 1476
||| ||||||| || ||| |||||||||||||||||||||| |||| ||||||||||||
Sbjct 1228 GAAGTTGAATTGTTGTTTTGTGAACAACATTTCAGGAAATTTAGCTCAGAAGACCACCTA 1287
Query 1477 CTATTGGTGAGATATT-CATTAGGACTCATACCAAAAAAGATGGGAGTTTTGTTGATAGG 1535
| ||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1288 GTGTTGGTGAGATATTTC-TTAGGACTCATACCAAAAAAGATGGGACTTTTGTTGATAGG 1346
Query 1536 AAGGCGCAGGAAATTCATGAGGCATATTTGAAGAACAAGGAAGCTAAGTTGGCTGCCCTT 1595
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1347 AAGGCGTAGGTAATTCATGAGGCATATTTGAAGAACAAGGAAGCTAAGTTGGCTGCCGTT 1406
Query 1596 GTGAATGATGAAGGGTCTGATGGTACATCCCGTCGATCAGAACTATCTCAAGAGGAGGAT 1655
| |||||||||||||||||||||||| |||| | ||||| |||||||||||||| |||||
Sbjct 1407 GAGAATGATGAAGGGTCTGATGGTACTTCCCATGGATCATAACTATCTCAAGAGAAGGAT 1466
Query 1656 GATGAGATCTTCCTT----T--TG-G-T-AATG-tttttttATTA-T-T-ATCACTTACT 1702
||||||||||||||| | || | | ||| ||||||| || | | ||||||||||
Sbjct 1467 GATGAGATCTTCCTTCAGGTAATGTGGTTAATCCTTTTTTTCTTTGTATCATCACTTACT 1526
Query 1703 TCATCTTTTAAGAACTAATCCTCTTGttttttttttGCAGTCAACTGTCACAAACGAGAG 1762
||||||||||||||||||||||||||| | |||||| ||||||||||| |
Sbjct 1527 TCATCTTTTAAGAACTAATCCTCTTGT----------C--TCAACTATCACAAACGAGTG 1574
Query 1763 AGGGGTATACTTCGGAATGGGAAGCTTAGGGAGGTACATCAATGGGAAGCGGAAGTACCC 1822
||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1575 AGGCGTATACTTCGGAATGGGAAGCTTAGGGAGGT-CATTAATGGGAAGCGGAAGTACCC 1633
Query 1823 AGGAAGCAGTTCTGCTTTCACTTCCTTGCAGTCACAGCTTGAGGAAGCCAACCGCAAGAT 1882
| ||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 1634 AAGAAGCAGTTATGCTTTCACTTCCTTGCAATCACATCTTGAGGAAGCCAATCGCAAGAT 1693
Query 1883 AGAAGAACAAGCGACTCTCCAAGCACATCGGGAGGCAGAGGCATTGCGGGTGAAAGCTGA 1942
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1694 AGAAGAACAAGCAACTCTCCAAGCACATCGTGAGGCAGAGGCATTGCGGGTGAAAGCTGA 1753
Query 1943 GCAAGCAGAGATCAAGCGTGTTGCTAATGAGCAACAAGCAGAGATCAAACACTTGAGCAT 2002
|||| || |||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1754 GCAACCAAAGATCAAGCGTGTTGCTAATGAGCAACAAGAAGAGATCAAACACTTGAGGAT 1813
Query 2003 GGTGAAGAAGTACTTGACCGAAACTGACCCCAAGTTTCTCGCCTTCCTCGAGTCTGCT 2060
||||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||
Sbjct 1814 GGTGAAGAAGTACTTGACCAAAACTGACCCTAGGTTTCTCGTCTTCCTCGAGTCTGCT 1871
> AT4G05505.1 | Symbols: | transposable element gene | chr4:2785708-2787991
FORWARD LENGTH=2284
Length=2284
Score = 1709 bits (925), Expect = 0.0
Identities = 1256/1408 (89%), Gaps = 54/1408 (4%)
Strand=Plus/Plus
Query 685 AGTAGATTAGGTTTAGGGTTAATATTGAGTAATGTGTGTGTGTAT-CTGCTAAGTAGATT 743
||| |||||| | || |||||||||||||||||||||||||||| || | |||| ||||
Sbjct 818 AGTTGATTAGAATAAGAGTTAATATTGAGTAATGTGTGTGTGTATCCT-CAAAGTTGATT 876
Query 744 AGGTGTGT-ATAT-GGTAAGCTGAGTAT-ATTAGGTTTAGGGTTAATATTGAGTAATATG 800
|||||||| |||| ||| | ||| | |||||||| || |||||||||||||||| ||
Sbjct 877 AGGTGTGTAATATATTTAA--TAAGT-TGATTAGGTTAAGCGTTAATATTGAGTAATGTG 933
Query 801 TGTGTGTATGGTAAGCTGAGTAGATTTGTATAAAGCTTGCTAATTGGTTTATGTAATTGT 860
||| | |||| |||| ||| ||| ||||||| | ||||||||||||||||||||||
Sbjct 934 TGTATATATGCTAAGTTGATTAGGTTTGTAT--A---TGCTAATTGGTTTATGTAATTGA 988
Query 861 AGGTTTGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTATTCACAAACAAG 920
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 989 AGGTTTGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTCTTCACAAACAAG 1048
Query 921 TTTAATGGACCATATTACAATTGGAGCTGTGTACCTACTGAAAGAAGACACAAATACTTC 980
|||||||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1049 TTTAATGGGCCATTTTACAGTTGGAGCTGTGTACCTACTGAAAGAAGACACATATACTTC 1108
Query 981 CTCGAATTCGCGGTAAATTAACTTCTATTGTC-T-GT-A--TC---CATTTGGTTTGGTT 1032
||||||||||| |||||||||||||| | || | | | || ||||||||||||||
Sbjct 1109 CTCGAATTCGCAATAAATTAACTTCTA-TCTCTTATTAATCTCTTACATTTGGTTTGGTT 1167
Query 1033 TGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAAAACACACACATGGC 1092
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1168 TGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAGTACACACACATGGC 1227
Query 1093 ATCCATCACTGACCGGTGTAATTGAAGAGAAATTCTACAAAATATGTC-AGCTGCGTATG 1151
||||||||||||| |||||| ||||||| ||||||| |||||||||| | | |||||||
Sbjct 1228 ATCCATCACTGACTGGTGTAGTTGAAGAAAAATTCTTTAAAATATGTCAAAC-GCGTATG 1286
Query 1152 AAGGACATGGTTTCTAAGGCTTGCTCAAAACGAGCCACTGAGAGACCGCCATGGATTGAG 1211
|||||||||||||||||||||||| ||||||| || | |||| |||||||||||||||||
Sbjct 1287 AAGGACATGGTTTCTAAGGCTTGCGCAAAACGTGCAAATGAGCGACCGCCATGGATTGAG 1346
Query 1212 AAGACATTGTGGAAGGAAATGTGTGAGTATTGGGACACAGAAGAAG-CACTTGCCAAGAG 1270
||||||||||||||||||||||||| ||||||||||||| |||||| || ||||||||||
Sbjct 1347 AAGACATTGTGGAAGGAAATGTGTGCGTATTGGGACACAAAAGAAGCCA-TTGCCAAGAG 1405
Query 1271 TTCAACCACATCAGCAGCTCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCATGT 1330
||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||
Sbjct 1406 TTCAACCACATCAGCAGCTTGAATGTCTGACCGTAATGGTCCTGGTCCTCACAAACATGT 1465
Query 1331 ATCGGGGCCAAAGTCTTTCTTACAAATCGAGCAAGAGATGGTAAGTTACATCAAGCACTC 1390
|||||||||||||||||||||||| || ||||||||||| ||||| | | | || |
Sbjct 1466 ATCGGGGCCAAAGTCTTTCTTACAGATTGAGCAAGAGATAGTAAG-T---T--A-CA-T- 1516
Query 1391 TTGTTTATTTACATAATGGTTTTCCTTAAGAATTTGAAtttttttGTGAACAACATTTCA 1450
||||||||||| | |||| |||| |||||| | |||||| |||||||||||||||||||
Sbjct 1517 TTGTTTATTTATAGAATGATTTTTATTAAGAGTCTGAATTGTTTTGTGAACAACATTTCA 1576
Query 1451 GGAAATTGAGCTGGGAAGACCACCTACTATTGGTGAGATATTCATTAGGACTCATACCAA 1510
|||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1577 GGAAATTGAGTTGGGAAGACCACCTACTATTGGTGAGATATTCGTTAAGACTCATACCAA 1636
Query 1511 AAAAGATGGGAGTTTTGTTGATAGGAAGGCGCAGGAAATTCATGAGGCATATTTGAAGAA 1570
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1637 AAAAGATGGGACTTTTGTTGATAGGAAGGCGCATGAAATTCATGAGGCATATTTGAGGAA 1696
Query 1571 CAAGGAAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGGTCTGATGGTACATCCCGTCG 1630
||||||||||||||||||||||| || ||||||||||||||| |||||||| ||||||||
Sbjct 1697 CAAGGAAGCTAAGTTGGCTGCCCGTGAGAATGATGAAGGGTCAGATGGTACTTCCCGTCG 1756
Query 1631 ATCAGAACTATCTCAAGAGGAGGATGATGAGATCTTCCTT----T--T-G----G----T 1675
||||||||||||||| ||||||||||||||| |||||||| | | | | |
Sbjct 1757 ATCAGAACTATCTCAGGAGGAGGATGATGAGGTCTTCCTTCAGGTAATGGTCTTGTTCCT 1816
Query 1676 AATGt-ttttttAT-TATTATCACTTACTTCATCTTTT-AAGAACTAATCCTCTTGtttt 1732
||| |||||| | ||||||||||| ||||||||||| | || |||||||||||| ||
Sbjct 1817 CTTGTCTTTTTTTTATATTATCACTTGCTTCATCTTTTCTACAA-TAATCCTCTTGTCTT 1875
Query 1733 ttttttGCAGTCAACTGTCACAAACGAGAGAGGGGTATACTTCGGAATGGGAAGCTTAGG 1792
|| |||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||
Sbjct 1876 TTGTTTGCAGTCAACTGTCACAAACAAGAGATGGGTATACTTTGGAATGGGAAGCTTAGG 1935
Query 1793 GAGGTACATCAATGGGAAGCGGAAGTACCCAGGAAGCAGTTCTGCTTTCACTTCCTTGCA 1852
||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1936 GAGGTACATCAATGGAAAGCGGAAGTACCCAGGCTGCAGTTCTGCTTTCACTACCTTGCA 1995
Query 1853 GTCACAGCTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCGACTCTCCAAGCACATCG 1912
|||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1996 GTCACAGCTTTAGGAAGCCAACTGCAAGATAGAAGAACAAGCGACTCTCCAGGCACATCG 2055
Query 1913 GGAGGCAGAGGCATTGCGGGTGAAAGCTGAGCAAGCAGAGATCAAGCGTGTTGCTAATGA 1972
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2056 TGAGGCAGAGGCATTGAGGGTGAAAGCTGAGCAAGCAGATATCAAGCGTGTTGCTAATGA 2115
Query 1973 GCAACAAGCAGAGATCAAACACTTGAGCATGGTGAAGAAGTACTTGACCGAAACTGACCC 2032
|||||||| |||||||||||||||||| ||||| |||||||||||||| |||| |||||
Sbjct 2116 GCAACAAGAAGAGATCAAACACTTGAGGATGGTTAAGAAGTACTTGACAGAAAGAGACCC 2175
Query 2033 CAAGTTTCTCGCCTTCCTCGAGTCTGCT 2060
|||||||||||| |||||||||||||||
Sbjct 2176 CAAGTTTCTCGCATTCCTCGAGTCTGCT 2203
Score = 516 bits (279), Expect = 4e-145
Identities = 552/675 (82%), Gaps = 53/675 (8%)
Strand=Plus/Plus
Query 63 AAATCGACCCACTTCTTCCCAGCCTGTACGAGTTGAATCGAAGAC-----C-TTGAATCG 116
|||||||||||||||||||||||| || ||||||||| ||||||| | | |||||
Sbjct 57 AAATCGACCCACTTCTTCCCAGCCAGTTCGAGTTGAACCGAAGACTAGGGCATCAAATCG 116
Query 117 AAGACCTAGGGGTCTTCCCAGCCAGTACGAGTTCACGCCGGCGAATCGTCAAGCCCCACT 176
||| || || |||| ||||||||| ||||||||||||| || || ||||| |||||| ||
Sbjct 117 AAGGCCCAGTGGTCATCCCAGCCACTACGAGTTCACGCTGGTGATTCGTCCAGCCCCGCT 176
Query 177 TCAAGATTCTGAACAAGAGCCGATTGCACAACCTCCAACGGGTCCAACCATCAGGGACTA 236
|||||||| |||||| | |||| |||||| ||| ||||||||||| || ||||||||||
Sbjct 177 TCAAGATTTTGAACATCATCCGACTGCACAGCCTTCAACGGGTCCATCCGTCAGGGACTA 236
Query 237 TCCTCCTCCGACGCAACTTTTCCAGTCAGGCGAAGGATCTCCTCGCGGATCTGG--CTC- 293
|||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 237 TCCTCCTCCGACGCAACTTTTCCAGTCAGGCGAAGGGTCTCCTCGCGGATCTTGTTCTCC 296
Query 294 --G---A-CTC---C-A-T-T-TC--GAGCATCTGGATCGACTCAACCTAGATCTGGAGG 338
| | || | | | | | ||||||| || |||||||||||||||||||||||
Sbjct 297 TCGTGGATCTGGATCGACTCTGTTTTGAGCATCCGGCTCGACTCAACCTAGATCTGGAGG 356
Query 339 ATCTCGCCGGTTCAACGGGAAGCCT--AC----A-ATCAGTCTACAGCGCCGGATCAACG 391
|||| | |||| || ||||| || | | || ||| ||||| ||| ||| |
Sbjct 357 ATCT-G----TTCATCGTCTAGCCTCTACGGCGAGA-CAATCTCCAGCGGCGGTTCA-CA 409
Query 392 GGAA-GCCTCCAATCAGTCTCCAGCGCCGGTTCAACCG-GAAGCCTCCAATCCTCCACCT 449
||| ||||||||||||||| ||||| |||||||| | ||||| |||||||||| || |
Sbjct 410 AGAATGCCTCCAATCAGTCTATAGCGCTGGTTCAAC-GAGAAGCATCCAATCCTCTACTT 468
Query 450 CGGCAGGCGTCAAATCCTCCACCTCGAGCCTCTGTATCACATCACAGCTCTCAAGCTCAA 509
| ||| || |||||||||| ||||||||||| |||||| |||||||||||||||||||||
Sbjct 469 CCGCAAGCCTCAAATCCTCTACCTCGAGCCTATGTATCTCATCACAGCTCTCAAGCTCAA 528
Query 510 AACTCACATGCGGAAGAAGATGAAGATGAGGAAGCTGAG---G---CTGAT-TATGAAAG 562
|||||||| ||||| |||||||||||||| || |||||| | ||||| | ||||||
Sbjct 529 AACTCACACGCGGAGGAAGATGAAGATGATGATGCTGAGTTTGTGGCTGATCT-TGAAAG 587
Query 563 GGAATCAACTCTCCCTGAAGATTCGCTTGCTACTCTCCATGAGTTGCTT-CTCCGGCCAG 621
|||||||||||||||||||| || |||||| | ||| ||||| ||||| | || |||||
Sbjct 588 GGAATCAACTCTCCCTGAAGCTTTGCTTGCAAATCTACATGACATGCTTGC-CCAGCCAG 646
Query 622 GACGTGAGAAGTATACAACGGTCATCTCTCCCACATTTGAGCCTGAAACC-TATTGGTAA 680
| |||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||
Sbjct 647 GCCGTGAGAAGTATACAACGGTTATCTCTCCCACATTTGAGCCTCTAACCGTAT-GGTAA 705
Query 681 GCTGAGTAGATTAGG 695
|||||| | ||||||
Sbjct 706 GCTGAGAATATTAGG 720
> AT4G06570.1 | Symbols: | transposable element gene | chr4:3518688-3520916
FORWARD LENGTH=2229
Length=2229
Score = 1535 bits (831), Expect = 0.0
Identities = 1231/1410 (87%), Gaps = 83/1410 (6%)
Strand=Plus/Plus
Query 685 AGTAGATTAGGTTTAGGGTTAATATTGAGTAATGTGTGTGTGTATCTGCTAAGTAGATTA 744
||| |||||||| || ||||||||||||||| ||||||| |||||||| |||||
Sbjct 846 AGTTGATTAGGTGAAGCGTTAATATTGAGTAA------TGTGTATATGCTAAGTTGATTA 899
Query 745 GGTGTGTATATGGTAAGCTGAGTATATTAGGTTTAGGGTTAATATTGAGTAATATGTGTG 804
||| |||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 900 GGTTTGTATATGGTAAGCTGAGTAGATTAGGTTTAGGGTTAATATTGAGT-A-A------ 951
Query 805 TGTATGGTAAGCTGAGTAGATTTGTATAAAGCTTGCTAATTGGTTTATGTAATTGTAGGT 864
||| || | | | || || ||| || |||||||||||||||||||||||||||
Sbjct 952 --TAT-GT--G-T--G-AG--TT-TAT--AG-ATGCTAATTGGTTTATGTAATTGTAGGT 996
Query 865 TTGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTATTCACAAACAAGTTTA 924
|||||||||| ||||||||| |||||| |||||||||||||||||| | ||||||||||
Sbjct 997 TTGGTCACGAAAATGGTAAGATGACCCAGAAGATCACAAAGGTATTTAAAAACAAGTTTG 1056
Query 925 ATGGACCATATTACAATTGGAGCTGTGTACCTACTGAAAGAAGACACAAATACTTCCTCG 984
|||| |||||||||| |||||||| ||||||||| |||| ||||||||||||||||||||
Sbjct 1057 ATGGGCCATATTACAGTTGGAGCTATGTACCTACAGAAA-AAGACACAAATACTTCCTCG 1115
Query 985 AATTCG-CG----GTAA-----A-----T--TAA---CTTCTATTGTCTGTATCCATTTG 1024
|||||| || ||| | | ||| |||||||||| ||||||||||||
Sbjct 1116 AATTCGCCGTAAATTAACTTTTATCTCCTAGTAATCTCTTCTATTGTTTGTATCCATTTG 1175
Query 1025 GTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAAAACACA 1084
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1176 GTTTGGTTTGGTTGTTTGATCACTAACATCAAATTCTCCTCTTGTTTTATAGAAAACACA 1235
Query 1085 CACATGGCATCCATCACTGACCGGTGTAATTGAAGAGAAATTCTACAAAATATGTCAGCT 1144
||| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 1236 CACTTGGCATCCATCACTGACTGGTGTAATTGTAGAAAAATTCTACAAAATATGTCAGCT 1295
Query 1145 GCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAACGAGCCACTGAGAGACCGCCATG 1204
||||||||||||||||||||||||||||||| |||||| | ||| |||| || |||||
Sbjct 1296 GCGTATGAAGGACATGGTTTCTAAGGCTTGCGCAAAACAAACCAATGAGCTTCCACCATG 1355
Query 1205 GATTGAGAAGACATTGTGGAAGGAAATGTGTGAGTATTGGGACACAGAAGAAG-CACTTG 1263
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 1356 GATTGAGAAGACATTGTGGAAGGAAATGTGTGTGTATTGGGACACAGAAGAAGTCA-TTG 1414
Query 1264 CCAAGAGTTCAACCACATCAGCA-GCTCGAATGTCTGACCGTAATGGTCTTGGTCCTCAC 1322
||||||||| ||||||||| ||| | ||||||||||||||||||||||||||| |||||
Sbjct 1415 CCAAGAGTTAAACCACATCCGCAAG-TCGAATGTCTGACCGTAATGGTCTTGGCCCTCAA 1473
Query 1323 AAGCATGTATCGGGGCCAAAGTCTTTCTTACAAATCGAGCAAGAGATGGTAAGTTACATC 1382
|| |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1474 AAACATGTATCGGGGACAAAGTCTTTCTTACAAATCGAGTAAGAGATTGTAAGTTACATC 1533
Query 1383 AAGCACTCTTGTTTATTTACATAATGGTTTTCCTTAAGAATTTGAAtttttttGTGAACA 1442
||||||||||||||||||| | | |||||| |||||| |||||||||||
Sbjct 1534 AAGCACTCTTGTTTATTTA--T--T----------AAGAATCTGAATTGTTTTGTGAACA 1579
Query 1443 ACATTTCAGGAAATTGAGCTGGGAAGACCACCTACTATTGGTGAGATATTCATTAGGACT 1502
||||||||||||||||||||| |||||| ||||||||||| |||||||||| ||||||||
Sbjct 1580 ACATTTCAGGAAATTGAGCTGAGAAGACAACCTACTATTGTTGAGATATTCCTTAGGACT 1639
Query 1503 CATACCAAAAAAGATGGGA-GTTTTGTTGATAGGAAGGCGCAGGAAATTCATGAGGCATA 1561
||||||||||||||||||| ||| ||||| | |||| ||| |||||||||||||||||
Sbjct 1640 CATACCAAAAAAGATGGGACGTT--GTTGACACGAAGATGCAAGAAATTCATGAGGCATA 1697
Query 1562 TTTGAA-GAACAAGGAAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGGTCTGATGGTA 1620
|||| | || ||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct 1698 TTTGTATGA-CAAGGAAGCTAAGTTGGTTCCCCTTGAGAATGATGAAGGGTCTGATGGTA 1756
Query 1621 CATCCCGTCGATCAGAACTATCTCAAGAGGAGGATGATGAGATCTTCCTTTTGGTAATGt 1680
| |||||||||| |||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct 1757 CTTCCCGTCGATTAGAACTATCTCAAGAGGATGATGATGAGATTTTCCTTCAGGTAATGT 1816
Query 1681 --tt--t--tttATTATT-A-T-CACTTACTTCATCTTTTAAGAACTAATCCTCTTGttt 1731
|| | ||| || || | | ||||| ||||||||||||||||||||||||||||| |
Sbjct 1817 GGTTAATACTTTTTTTTTTAATTCACTTCCTTCATCTTTTAAGAACTAATCCTCTTGTCT 1876
Query 1732 tttttttGCAGTCAACTGTCACAAACGAGAGAGGGGTATACTTCGGAATGGGAAGCTTAG 1791
||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1877 TTTGTTTGCATTCAACTGTCACAAACGAGAGAGAGGTATACTTCGGAATGGGAAGCTTAG 1936
Query 1792 GGAGGTACATCAATGGGAAGCGGAAGTACCCAGGAAGCAGTTCTGCTTTCACTTCCTT-G 1850
||||||||||||||| |||||||||||||||| ||| || || ||||||||||||||| |
Sbjct 1937 GGAGGTACATCAATGAGAAGCGGAAGTACCCATGAAACACTTATGCTTTCACTTCCTTTG 1996
Query 1851 CAGTCACAGCTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCGACTCTCCAAGCACAT 1910
|| |||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1997 CAATCACAGTTTGAGGAAGTCAACCGCAAGATAGAAGAACAAGCGACTCTCCAATTACAT 2056
Query 1911 CGGGAGGCAGAGGCATTGCGGGTGAAAGCTGAGCAAGCAGAGATCAAGCGTGTTGCTAAT 1970
|| ||||||||| ||||||||| |||| |||||||||||| ||||||||||||||||||
Sbjct 2057 CGTAAGGCAGAGGAATTGCGGGTAAAAGTTGAGCAAGCAGATATCAAGCGTGTTGCTAAT 2116
Query 1971 GAGCAACAAGCAGAGATCAAACACTTGAGCATGGTGAAGAAGTACTTGACCGAAACTGAC 2030
|||||||| ||||||||||||||||||| |||||||||||||||||||| |||||| ||
Sbjct 2117 AAGCAACAAACAGAGATCAAACACTTGAGGATGGTGAAGAAGTACTTGACAGAAACTAAC 2176
Query 2031 CCCAAGTTTCTCGCCTTCCTCGAGTCTGCT 2060
|||| |||||||| |||||||||||||||
Sbjct 2177 CCCATGTTTCTCGAATTCCTCGAGTCTGCT 2206
Score = 375 bits (203), Expect = 7e-103
Identities = 364/438 (83%), Gaps = 26/438 (6%)
Strand=Plus/Plus
Query 274 TCTCCTCGCGGATCTGGCTCGACTCCATTTCGAGCATCTGGATCGACTCAACCTAGATCT 333
||||||||| ||||||| ||||||| ||||||||||| || ||||||||||||||||||
Sbjct 321 TCTCCTCGCAGATCTGGATCGACTCTGTTTCGAGCATCCGGCTCGACTCAACCTAGATCT 380
Query 334 GGAGGATCTCGCCGGTTCAACGGGAAGCCT--AC----AATCAGTCTACAGCGCCGGATC 387
|||||||| |||| | ||||| || || || ||| ||| | | | ||
Sbjct 381 CGAGGATCT-----ATTCATCATCTAGCCTCCACGTTGAAACAATCTCCAGAGGCAGTTC 435
Query 388 AACGGGAAGCCTCCAATCAGTCTCCAGCGCCGGTTCAACCG-GAAGCCTCCAATCCTCCA 446
||| |||||||||||||||||||||||| |||||||| || ||||| |||||||||| |
Sbjct 436 AACCTGAAGCCTCCAATCAGTCTCCAGCGGCGGTTCAA-CGAGAAGCATCCAATCCTCTA 494
Query 447 C-CTCGGCAGGCGTCAAATCCTCCACCTCGAGCCTCTGTATCACATCACAGCTCTCAAGC 505
| | || | |||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 495 CTTTAGG-AAGCGTCAAATCCTCCACCTCGAGTCTTTGTATCACATCACAGCTCTCAAGC 553
Query 506 TCAAAACTCACATGCGGAAGAAGATGAAGATGAGGAAGCTGAG---G---CTGATTATGA 559
|||||||||||| ||||| |||||||||||||||||||||||| | |||||| |||
Sbjct 554 TCAAAACTCACACGCGGAGGAAGATGAAGATGAGGAAGCTGAGTTTGAGGCTGATTTTGA 613
Query 560 AAGGGAATCAACTCTCCCTGAAGATTCGCTTGCTACTCTCCATGAGTTGCTT-CTCCGGC 618
||||||||||||| |||||||||||| |||||| ||||| ||||||||||| | || ||
Sbjct 614 AAGGGAATCAACTATCCCTGAAGATTTGCTTGCAACTCTATATGAGTTGCTTGC-CCAGC 672
Query 619 CAGGACGTGAGAAGTATACAACGGTCATCTCTCCCACATTTGAGCCTGAAAC-CTATTGG 677
|| | | |||||| |||||||||||||||||||| | ||| |||||| |||| |||| ||
Sbjct 673 CAAGCCATGAGAAATATACAACGGTCATCTCTCCTAAATT-GAGCCTCAAACTCTAT-GG 730
Query 678 TAAGCTGAGTAGATTAGG 695
| ||||||||| ||||||
Sbjct 731 TTAGCTGAGTATATTAGG 748
Score = 228 bits (123), Expect = 2e-58
Identities = 202/238 (85%), Gaps = 13/238 (5%)
Strand=Plus/Plus
Query 57 cccccAAAATCGACCCACTTCTTCCCAGCCTGTA-CGAGTTG-AATCGAAGACC------ 108
||||| |||| |||||||||||||||| || | ||||||| ||| |||||||
Sbjct 65 CCCCC-AAATAGACCCACTTCTTCCCA-CC-AAATCGAGTTGAAAT-GAAGACCAAGGAG 120
Query 109 TTGAATCGAAGACCTAGGGGTCTTCCCAGCCAGTACGAGTTCACGCCGGCGAATCGTCAA 168
||||||||| | || ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TTGAATCGACGGCCCAGGGGGCTTCCCAGCCAATACGAGTTCACGCCGGCGAATCGTCAA 180
Query 169 GCCCCACTTCAAGATTCTGAACAAGAGCCGATTGCACAACCTCCAACGGGTCCAACCATC 228
| || |||||||||||||||| ||| | ||||||||| |||||||| ||| |||| |
Sbjct 181 GTCCTGCTTCAAGATTCTGAACGAGATCTGATTGCACATCCTCCAACAAGTCAAACCGTG 240
Query 229 AGGGACTATCCTCCTCCGACGCAACTTTTCCAGTCAGGCGAAGGATCTCCTCGCGGAT 286
|||||||||||||||| ||||||||||| |||||||||||||||||||||| | ||||
Sbjct 241 AGGGACTATCCTCCTCTGACGCAACTTT-CCAGTCAGGCGAAGGATCTCCTTGTGGAT 297
Score = 87.9 bits (47), Expect = 4e-16
Identities = 52/54 (96%), Gaps = 1/54 (2%)
Strand=Plus/Plus
Query 672 TAT-TGGTAAGCTGAGTAGATTAGGTTTAGGGTTAATATTGAGTAATGTGTGTG 724
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 906 TATATGGTAAGCTGAGTAGATTAGGTTTAGGGTTAATATTGAGTAATATGTGTG 959
> AT4G06627.1 | Symbols: | transposable element gene | chr4:3604916-3606209
FORWARD LENGTH=1294
Length=1294
Score = 1513 bits (819), Expect = 0.0
Identities = 1111/1244 (89%), Gaps = 51/1244 (4%)
Strand=Plus/Plus
Query 849 TTATGTAATTGTAGGTTTGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTA 908
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TTATGTAATTGTAGGTTTGGTCACGACAATGGTAAGCTGACCCAGAAGATCACAAAGGTA 60
Query 909 TTCACAAACAAGTTTAATGGACCATATTACAATTGGAGCTGTGTACCTACTGAAAGAAGA 968
|||| |||||||||| |||| |||| ||||| |||||| |||||||||||||||||||||
Sbjct 61 TTCATAAACAAGTTTGATGGGCCATTTTACAGTTGGAGATGTGTACCTACTGAAAGAAGA 120
Query 969 CACAAATACTTCCTCGAATTCGCGGTAAATTAA---C--T-TC-TATT-GTCTGTATCCA 1020
|||| ||||||||||||||||| |||||| ||| | | || |||| ||| | | ||
Sbjct 121 CACATATACTTCCTCGAATTCGAGGTAAAGTAAGTTCTATCTCTTATTAATCTCT-TACA 179
Query 1021 TTTGGTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAAAA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 TTTGGTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAGTA 239
Query 1081 CACACACATGGCATCCATCACTGACCGGTGTAATTGAAGAGA-AATTCTACAAAATATGT 1139
|||||||||||||||||||| ||||||||||| ||||| | | | |||| |||||||||
Sbjct 240 CACACACATGGCATCCATCAGTGACCGGTGTAGTTGAATA-ATAGTTCTTTAAAATATGT 298
Query 1140 C-AGCTGCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAACGAGCCACTGAGAGACC 1198
| | | ||||||||||||||||||||||||||||||| ||| ||| |||| |||| ||||
Sbjct 299 CAAAC-GCGTATGAAGGACATGGTTTCTAAGGCTTGCGCAAGACGTGCCAATGAGCGACC 357
Query 1199 GCCATGGATTGAGAAGACATTGTGGAAGGAAATGTGTGAGTATTGGGACACAGAAGAAG- 1257
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 358 GCCATGGATTGAGAAGACATTGTGGAAGGAAATGTGTGCGTATTGAGACACAGAAGAAGC 417
Query 1258 CACTTGCCAAG-AGTTCAACCACATCAGCAGCTCGAATGTCTGACCGTAATGGTCTTGGT 1316
|| || || || |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 418 CA-TTACC-AGAAGTTCAACCACATCAGTAGCTCGAATGTCTGACCGTAATGGTCTTGGT 475
Query 1317 CCTCACAAGCATGTATCGGGGCCAAAGTCTTTCTTACAAATCGAGCAAGAGATGGTAAGT 1376
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 476 CCTCACAAACATGTATCGGGGCCAAAGTCTTTCTTACAGATTGAGCAAGAGATGGTAAG- 534
Query 1377 TACATCAAGCACTCTTGTTTATTTACAT-AATGGTTTTCCTTAAGAATTTGAAttttttt 1435
| | | || | ||||||||||| || |||| |||| |||||| | |||||| ||||
Sbjct 535 T---T--A-CA-T-TTGTTTATTTA-ATGAATGATTTTTATTAAGAGTCTGAATTGTTTT 585
Query 1436 GTGAACAACATTTCAGGAAATTGAGCTGGGAAGACCACCTACTATTGGTGAGATATTCAT 1495
|||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 586 GTGAACAACATTTCAGAAAATTGAGCTAGGAAGACCACCTACTATTGGTGAGGTATTCGT 645
Query 1496 TAGGACTCATACCAAAAAAGATGGGAGTTTTGTTGATAGGAAGGCGCAGGAAATTCATGA 1555
|| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 646 TAAGACTCATACCAAAAAAGATGGGACTTTTGTTGATAAGAAGGCGCAGGAAATTCATGA 705
Query 1556 GGCATATTTGAAGAACAAGGAAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGGTCTGA 1615
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 706 GGCATATTTGAAGAACAAGGAAGCTAAGTTGGCTGCCCGTGAGAATGATGAAGGGTCAGA 765
Query 1616 TGGTACATCCCGTCGATCAGAACTATCTC-AAGAGGAGGATGATGAGATCTTCCTT---- 1670
||||| |||||||||||||||||||||| || ||||||| |||||| ||||||||
Sbjct 766 CGGTACTTCCCGTCGATCAGAACTATCTCTAA-AGGAGGAGGATGAGGTCTTCCTTCAGG 824
Query 1671 T--TGGTAAT-Gt-tt-ttttA-------T-TATTATCACTTACTTCATCTTTTAAG-AA 1716
| |||| | || || ||||| | ||||||||||| ||||||||||| | ||
Sbjct 825 TCATGGTCTTGGTCTTCTTTTATTTCTTCTCTATTATCACTTGCTTCATCTTTTCTGCAA 884
Query 1717 CTAATCCTCTTGttttttttttGCAGTCAACTGTCACAAACGAGAGAGGGGTATACTTCG 1776
|||| ||| || |||| ||||||||||||| ||||||||||||||||| ||||||| |
Sbjct 885 -TAAT--TCTCGTCTTTTGTTTGCAGTCAACTATCACAAACGAGAGAGGGATATACTTTG 941
Query 1777 GAATGGGAAGCTTAGGGAGGTACATCAATGGGAAGCGGAAGTACCCAGGAAGCAGTTCTG 1836
|||||||||||||||||||||||||||||||||||| |||||||||||| |||| || ||
Sbjct 942 GAATGGGAAGCTTAGGGAGGTACATCAATGGGAAGCAGAAGTACCCAGGCAGCAATTTTG 1001
Query 1837 CTTTCACTTCCTTGCAGTCACAGCTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCGA 1896
|||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1002 CTTTCACTACCTTGCAATCACAACTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCGA 1061
Query 1897 CTCTCCAAGCACATCGGGAGGCAGAGGCATTGCGGGTGAAAGCTGAGCAAGCAGAGATCA 1956
|||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||
Sbjct 1062 CTCTCCAAGCACATCGTGAGGTAGAGGCATTGCGCGTGAAAGCTGAGCAAGCAGATATCA 1121
Query 1957 AGCGTGTTGCTAATGAGCAACAAGCAGAGATCAAACACTTGAGCATGGTGAAGAAGTACT 2016
|||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1122 AGCGTGTTGCTATTGAGCAACAAGCAGAGATCAAACACTTGAGGATGGTTAAGAAGTACT 1181
Query 2017 TGACCGAAACTGACCCCAAGTTTCTCGCCTTCCTCGAGTCTGCT 2060
|||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct 1182 TGACAGAAACTGACCCCAAGTTTCTCGCATTCCTCGAGACTGCT 1225
> AT1G38140.1 | Symbols: | transposable element gene | chr1:14300842-14302929
FORWARD LENGTH=2088
Length=2088
Score = 449 bits (243), Expect = 4e-125
Identities = 621/791 (79%), Gaps = 75/791 (9%)
Strand=Plus/Plus
Query 862 GGTTTGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTATTCACAAACAAGT 921
|||||||| | ||||| ||| | | || || |||||||||| || || ||||||||||
Sbjct 878 GGTTTGGTAAGGACAAGGGT-ATTTTACTAGGTAGATCACAAAAGTTTTTACAAACAAGT 936
Query 922 TTAATGGA-CCATATTACAATTGGAGCTGTGTACCTACTGAAAGAAGACACAA-ATACTT 979
|| || || |||||||||| |||||| ||||| ||||||| ||||||| | || ||||||
Sbjct 937 TTGAT-GAGCCATATTACAGTTGGAGATGTGTGCCTACTGCAAGAAGAGA-AAGATACTT 994
Query 980 CCTCGAATTCGCGGTAAATTAACTTCTATTGTCTGTATCCA--TT-T-GGTTTGGTTTGG 1035
| ||||||||| ||| | |||||||| | || | || | || | |||| |||||
Sbjct 995 CTTCGAATTCG-GGT-GA--AACTTCTA-TCTC-CTCTCAATTTTCTACTTTTGTTTTGG 1048
Query 1036 TTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAAAACACACAC-A-TGGCA 1093
|| ||| |||||||||||||||||||| |||||||||| | |||||||| || | ||| |
Sbjct 1049 TTATTTCATCACTAACATCAAACTCTCTTCTTGTTTTGCAAAAAACACATACAATTGGGA 1108
Query 1094 TCCATCACTGACCGGTGTAATTGAAGAGAAATTCTACAAAATATGTCAGCTGCGTATGAA 1153
||| ||||| || |||| ||||||| |||| ||| || || ||||| |||||||||||
Sbjct 1109 TCCCTCACTTACTAGTGTGATTGAAGCCAAATACTATAAGATTTGTCAACTGCGTATGAA 1168
Query 1154 GGACATGGTTTCTAAGGCTTGCTCAAAACGA-GCCACTGAGAG--ACCGCCATGGATTGA 1210
|||||||||| ||| | || | || | || ||||| ||| | ||||||||
Sbjct 1169 AGACATGGTTTGTAA-G--TG-----AGGGAGGTTAC-GAGAGCAACCTCTTTGGATTGA 1219
Query 1211 GAAGACATTGT-GGAAGGAAATGTGTGAGTATTGGGACACAGAAGAAG-CACTTGCCAAG 1268
||| ||||||| |||| ||||||||| | ||||||||||||||||||| || || |||
Sbjct 1220 GAACACATTGTGGGAA-GAAATGTGTAACTATTGGGACACAGAAGAAGCCA-AAGCAAAG 1277
Query 1269 AGTTCAACCACATCAGC-AGCTCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCA 1327
| || ||| |||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 ATTTTAACTACATCATCTA-CTCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCA 1336
Query 1328 TGTATCGGGGCCA--AAGTCT-TTCTTACAAATCGAGCAAGAGATGGTAAGTT-A--CA- 1380
||||||||| | | |||| | |||||||||||| | |||||| ||||||||| | ||
Sbjct 1337 TGTATCGGG-C-ATGAAGT-TGTTCTTACAAATCAAACAAGAGGTGGTAAGTTCAAACAC 1393
Query 1381 TC--AAGCACTCTTGTTTA-TTTACATA-ATGGTTT---TCCTTAAGAATTTGAAttt-t 1432
| || || | |||||| ||||| || || | | |||| ||||| |||| ||| |
Sbjct 1394 TGTGAA-CA-T-TTGTTTTGTTTACTTATATAATATCCATCCT-AAGAAGTTGA-TTTGT 1448
Query 1433 tttGTGAACAACATTTCAGGAAATTGAGCTGGGAAGACCACCTACTATTGGTGA-GATAT 1491
||||| ||||||||||||||| |||| | | |||||||||||| | | |
Sbjct 1449 TTTGTTTACAACATTTCAGGAAGTTGA-C--------C----TACTATTGGTGAAGTT-T 1494
Query 1492 TCATTAGGACTCATACCAAAAAAGATGGGAGTTTTGTTGATAGGAAGGCGCAGGAAATTC 1551
|| |||| |||||||||||||||||||||| |||||| |||||||||| | ||||| |||
Sbjct 1495 TCCTTAGAACTCATACCAAAAAAGATGGGACTTTTGTCGATAGGAAGGTGGAGGAAGTTC 1554
Query 1552 ATGAGGCATATTTGAAGAACAAGG-AAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGG 1610
||||| |||| ||||||||||| || ||||||||| |||||||| ||||||||||||
Sbjct 1555 ATGAGTCATAAAAGAAGAACAAGGCAA-CTAAGTTGGTTGCCCTTGAAAATGATGAAGGG 1613
Query 1611 TCTGATGGTAC 1621
| ||| |||||
Sbjct 1614 TATGAAGGTAC 1624
> AT4G08598.1 | Symbols: | transposable element gene | chr4:5480552-5482514
REVERSE LENGTH=1963
Length=1963
Score = 244 bits (132), Expect = 2e-63
Identities = 186/212 (88%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 133 CCCAGCCAGTACGAGTTCACGCCGGCGAATCGTCAAGCC-CCACTTCAAGATTCTGA-AC 190
||||||||||| || ||||||||| || |||||||| || ||||||||||| |||| |
Sbjct 1 CCCAGCCAGTATGATTTCACGCCGCCGGATCGTCAA-CCACCACTTCAAGACCCTGATAG 59
Query 191 AAGAGCCGATTGCACAACCTCCAACGGGTCCAACCATCAGGGACTATCCTCCTCCGACGC 250
|| | ||||||||||| |||| |||||| | || |||| |||||||||||||||||||
Sbjct 60 AA-ATCCGATTGCACAGGCTCCGACGGGTGCTACTGTCAGAGACTATCCTCCTCCGACGC 118
Query 251 AACTTTTCCAGTCAGGCGAAGGATCTCCTCGCGGATCTGGCTCGACTCCATTTCGAGCAT 310
|||||||||| |||||||||||||||||| |||||||||| |||| ||||||||||||||
Sbjct 119 AACTTTTCCAATCAGGCGAAGGATCTCCTTGCGGATCTGGATCGATTCCATTTCGAGCAT 178
Query 311 CTGGATCGACTCAACCTAGATCTGGAGGATCT 342
| ||||||||||||||||||| ||||||||||
Sbjct 179 CCGGATCGACTCAACCTAGATTTGGAGGATCT 210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102107908530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5