BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497076
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13200.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 808 0.0
> AT4G13200.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: thylakoid, chloroplast thylakoid membrane,
chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 97 Blast hits to
97 proteins in 46 species: Archae - 0; Bacteria - 65; Metazoa
- 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes
- 2 (source: NCBI BLink). | chr4:7668147-7669214 REVERSE LENGTH=751
Length=751
Score = 808 bits (437), Expect = 0.0
Identities = 625/712 (88%), Gaps = 27/712 (4%)
Strand=Plus/Plus
Query 1 AGAGAAAGAGAGAAATATGAGCAGCTTCACGATTCCATCTCCTTCCTCCTTCTCTCTTTC 60
||||| ||||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 33 AGAGACAGAGAGAGAGATGAGTAGCTTCACGATTCCATCTCCTTCCTCCTTCTCTCTTTC 92
Query 61 CAATTCCTATTATCAACCCTCTCGTCATCCCTTCATTCCCCGCAATTCTCGTTCCAATTT 120
|||||| ||| ||||| |||||| |||| |||||| || |||||||||||||||||||||
Sbjct 93 CAATTCATATAATCAAACCTCTCCTCATTCCTTCACTCTCCGCAATTCTCGTTCCAATTT 152
Query 121 TGA-AT-C-TC-G--CCGATTAGCTGTCGAGGCTCGAAGAAGAAGCACTTCTTTACGGTG 174
||| | | | | ||||||| ||| ||| |||||||||||||||||||||||||||
Sbjct 153 TGAGTTCCACCGGTTACGATTAGATGTGGAGTCTCGAAGAAGAAGCACTTCTTTACGGT- 211
Query 175 CAGCAA-AG--GCACCCACGGTTCAGATTCAGGTGAAAATGAGAACAGAAGTGTGTTAGA 231
| ||| | |||| | ||| |||||||||||||||||||||||| ||||||||||||
Sbjct 212 C--CAATTGCTCCACCAAAGGTACAGATTCAGGTGAAAATGAGAACAAAAGTGTGTTAGA 269
Query 232 TGCTTTCTTTTTGGGGAAAGCATTAGCTGAGGTTATCAATGAGAGAATTGAGTCCACTGT 291
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 270 TGCTTTCTTTTTGGGGAAAGCATTAGCTGAGGTTATCAATGAGAGAATTGAGTCTACTGT 329
Query 292 TGGAGAAGTTTTGGGTACTATTGGAAGGTTTCAAGCTGAGCAACAGAAGCAAGTTCAAGA 351
||||||||| ||| |||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 330 TGGAGAAGTGTTGAGTACTATTGGAAAGTTTCAAGCTGAGCAACAGAAACAAGTTCAAGA 389
Query 352 GATTCAGGAAGAGGTTCTTGAAAGAGCTAAGAAAGCTAAGGAAAGAGCGGCTCGAGAAAC 411
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 390 GATTCAGGAAGAGGTTCTTGAAAGAGCTAAGAAAGCTAAGGAAAGAGCAGCTCGAGAAAC 449
Query 412 CAAGGAGGAACAAGGACTTGTTGCTTCCAAACCAGCAGCCATTACCCGAAAACCGGCTGC 471
| |||||||||||||||||||||||||||||||| ||||||||| ||||| |||| |||
Sbjct 450 TATGGAGGAACAAGGACTTGTTGCTTCCAAACCAGTAGCCATTACTCGAAATCCGGATGC 509
Query 472 TGGCGTTGTTACCTCTGTAACTCCTACATCGACTGTTGAGAGCAACACTATAATGGGTGG 531
|| |||||| ||||||||||| |||||||||| ||||||||||| |||||||||| ||
Sbjct 510 TGTTGTTGTTGCCTCTGTAACTTCTACATCGACCGTTGAGAGCAAGACTATAATGGTTGA 569
Query 532 TGTAGTGGAAAGCTCGAGTTCTAGTGATGAAGACTGTTACG-T--TA--AAGA-TTTG-G 584
||||| ||||||||||||||| |||||||||||||| ||| | | ||| ||| |
Sbjct 570 TGTAGAGGAAAGCTCGAGTTCCAGTGATGAAGACTGA-ACGATGGTTTCAAGGGTTTAAG 628
Query 585 T--AATA---GC-AGCAGCAG-AGAGACTTGTCTGAAACGGTTGAGATACATGTACTGGA 637
| || | | | ||||| |||||||||||| ||| |||| ||||| ||||||| ||
Sbjct 629 TTGAAGATTTGGTAATAGCAGCAGAGACTTGTCTAAAAGGGTTAAGATATATGTACTTGA 688
Query 638 AGAAACGATGTAAACAATGAAAGTTGATATAAATCAAGGTTAAACCAGCATT 689
| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 689 AAAAACGATGTAAACAATGTAAGTTGATATAAATCAAGGTTAAACCAGCATT 740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5