BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497080
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13160.1 | Symbols: | Protein of unknown function, DUF593 |... 992 0.0
> AT4G13160.1 | Symbols: | Protein of unknown function, DUF593
| chr4:7653647-7654925 FORWARD LENGTH=1103
Length=1103
Score = 992 bits (537), Expect = 0.0
Identities = 799/914 (87%), Gaps = 64/914 (7%)
Strand=Plus/Plus
Query 55 ATGGACTACCCGGAAAGTTATAGATTGACATTTTGTGGACTTGTGGTTGCTTTTATGGAA 114
|||||||||| |||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct 163 ATGGACTACCAAGAAAGTTATAGATTGACATTTTATGGAATTTTGGTTGCTTTTATGGAA 222
Query 115 TTAGCATTTGCTTATTGTCTTCTATGTGTATC-GTCTATCGTCTTTATTACATCGAAGTT 173
|||||||||||||||||||||||||| ||||| | || ||||||||||||||||||||||
Sbjct 223 TTAGCATTTGCTTATTGTCTTCTATGCGTATCAG-CTTTCGTCTTTATTACATCGAAGTT 281
Query 174 GCTACTGTTTTTGCCATGTCCTTGTTCTGGAATTCTTGGGTGCCAAAACAGTGATCTCTG 233
||||||| ||| ||| || || | | || |||| ||||||||||||||||||
Sbjct 282 GCTACTG--TTT---ATG-CCATG---T---A-TC--GGGTACCAAAACAGTGATCTCTG 326
Query 234 CATCCAAAAACTTCTCTTTGATTGGCCATTCAGAATCATACTCAGAGTCCAGAAGCTAGC 293
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 327 CATCCAAAAACTTCTCTTTGATTGGCCATTCAGAATCATACTCAGAGTTCAGAAGCTAGC 386
Query 294 TACTACTACTAGACTAAGCCTTTTGCATCATC-AG-----G---AAGATCAAG---AAG- 340
|||||||| ||| | |||| |||| ||||||| || | |||| |||| |||
Sbjct 387 TACTACTAATAGGCCAAGCGTTTTACATCATCAAGAACAAGAACAAGAACAAGAACAAGA 446
Query 341 ---AG-A-AGAAGAATTTGGTTGAGAAAGATAAGAACTTGGAATCGATTGATAAAGTGAG 395
|| | |||||| | ||||||| ||||||||||||| ||||| ||| |||| ||| ||
Sbjct 447 ACAAGAAGAGAAGACTATGGTTGATAAAGATAAGAACTCGGAATTGATGGATAGAGTTAG 506
Query 396 GTTGTTGGAAGAAGCTGTTGAGGAAGAGAGAGTTGCTAGAGCTGCTTTAATGGTTGAATT 455
||||||||||| |||||||||| |||||| ||| |||| |||||||||||||||||||||
Sbjct 507 GTTGTTGGAAGTAGCTGTTGAGCAAGAGAAAGTAGCTAAAGCTGCTTTAATGGTTGAATT 566
Query 456 GGAGGAAGAAAGAGCAGCTTCAGCATCAGCAGCTGATGAAGCGATGGCTATGATTCTGAG 515
||| ||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 567 GGAACAAGAAAGAGCAGCTTCAGCATCAGCAGCTGATGAAGCTATGGCTATGATTTTAAG 626
Query 516 GTTACAAGCGGATAAAGCTTCGCTTGAGATGGAAGGGAAGCAATATGAGAGAATGATTGA 575
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 GCTACAAGCGGATAAAGCTTCGCTTGAGATGGAAGGGAAGCAATATGAGAGAATGATTGA 686
Query 576 TGAGAAATTTGCTTATGATGAGGAAGAGATGAATATTCTCAAGGAGATTCTTTTTAAAag 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 TGAGAAATTTGCTTATGATGAGGAAGAGATGAATATTCTCAAGGAGATTCTTTTTAAAAG 746
Query 636 agagagagagaAGCATTTTCTTGAGAAAGAACTTGAGACTTACAAGCACATTGATGATGA 695
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 GGAGAGAGAAAAGCATTTTCTTGAGAAAGAACTTGAGACTTACAAGCACATTGATGATGA 806
Query 696 TCAAGAGACCCAAGATGATGGTTTCAACGAGAAGAGAGAAGGCGATGAGGATAGAGAACC 755
||||||||| |||| |||||||||||||||| ||||||||||| |||||||
Sbjct 807 TCAAGAGACGGAAGA---------CAACGAGAAGAGAGAATGCGATGAGGATGGAGAACC 857
Query 756 GATTATGTATGATGTTCATGTCATTGAGGATAACAGTAATG-CTAAGGTCAGGGATGATG 814
|||| |||||||||||||||||||||||||||| ||| | | |||| || ||||||||||
Sbjct 858 GATTGTGTATGATGTTCATGTCATTGAGGATAATAGTCA-GACTAAAGTGAGGGATGATG 916
Query 815 ATGTAGCAGAACACAAAGAGATGAAGCAAATGGAACATGAAGTGAAGCAACTTCTAGTCA 874
|||||||||||||||||||||||||| | || |||| | | | | |||||
Sbjct 917 ATGTAGCAGAACACAAAGAGATGAAG-----G-AA---GAAG--A-G-A--T---AGTCA 958
Query 875 AGGATCATGATTCAATATCATCACCTACTTCATCTTCCATTCATCTCCCATAAGTTTCTA 934
|||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 959 AGGATCATGATTCAGTATCATCACCTACTTCATCTTCAACACATCTCCCATAAGTTTCTA 1018
Query 935 ATTCTGGTTGTTGA 948
|||||| |||||||
Sbjct 1019 ATTCTGATTGTTGA 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5