BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg497081

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13150.1 | Symbols:  | unknown protein; Has 83 Blast hits to...   767    0.0  


> AT4G13150.1 | Symbols:  | unknown protein; Has 83 Blast hits 
to 82 proteins in 37 species: Archae - 0; Bacteria - 51; Metazoa 
- 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes 
- 2 (source: NCBI BLink). | chr4:7650223-7652289 REVERSE 
LENGTH=1199
Length=1199

 Score =  767 bits (415),  Expect = 0.0
 Identities = 479/510 (94%), Gaps = 3/510 (1%)
 Strand=Plus/Plus

Query  1     ATATGATACCGTTTTACCTTGGGAAGCTCTTCAGACAAAGTGGAGCATCAGATGATGTTT  60
             ||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct  681   ATATGATACCGTTTTACATTGGTAAGCTCTTTAGACAAAGTGGAGCATCAGATGATGTTT  740

Query  61    GTTCAAAGCTGGGTATAGGTAAGGAGAAAGCACTGAGCATTACTCAGGCTGTCCAAAAGT  120
             |||||||||| ||||||||||| ||||||||  | |||||||||||||| ||||||||||
Sbjct  741   GTTCAAAGCTCGGTATAGGTAAAGAGAAAGCGTTAAGCATTACTCAGGCAGTCCAAAAGT  800

Query  121   ACGGCAACCTCTCAGGTTTTGTTGAAAGATTTTCTTTGGGAATGAGGAATCCTACAGCAT  180
             | |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
Sbjct  801   ATGGCAACCTCTCAGGTTTTGTGGAAAGATTTTCTGTGGGAATGAGGAATCCTACAGCGT  860

Query  181   TCTTCGCCGGGGCTCTTGGAATATCTCCAGAGTGTTTCTTTGCAGGAGTTTGTTGTGGCG  240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct  861   TCTTCGCCGGGGCTCTTGGAATATCTCCAGAGTGTTTCTTTGCAGGAGTTTGTTGCGGTG  920

Query  241   GCTTGATTACTCTTCCACTTCAGCTTGTGATTGGGTTTCTCGTTAGAGAACGCCCCATGT  300
             | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  921   GTTTGATTACTCTTCCACTTCAGCTTGTGATTGGGTTTCTCCTTAGAGAACGCCCCATGT  980

Query  301   TTGCTCTTGCAGCAGTAGCAACTGCAGTGGGAATATGGACGATCTTCCCCTATGTGGTGG  360
             |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  981   TTGCTCTTGCAGCAGTAGCAACTGCAGTGGGAATATGGACAATCTTTCCCTATGTGGTGG  1040

Query  361   CTGCATCCACGGCTTTGTTCATCTACATTCGCAGTCGCTACTCCACGAAAGATTAGCTCT  420
             ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  1041  CTGCATCTACGGCTTTGTTCCTCTACATTCGCAGTCGCTACTCCACGAAAGATTAGTTCT  1100

Query  421   TCTTGTTACT-C--AATATCTATACATAGAAAGATGTAAGATCATATTAAAAGATCAAAT  477
             |||||||||| |  |||||| |||||||||||||||||||||||||| |||||||||| |
Sbjct  1101  TCTTGTTACTACTCAATATCAATACATAGAAAGATGTAAGATCATATAAAAAGATCAATT  1160

Query  478   ATAGTACTTAGCCAGCCAAACTAATGGCTT  507
             |||||||| ||||| ||||| |||||||||
Sbjct  1161  ATAGTACTCAGCCAACCAAATTAATGGCTT  1190



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24212858854


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5