BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg497083 Length=1147 Score E Sequences producing significant alignments: (Bits) Value AT4G13110.1 | Symbols: | BSD domain-containing protein | chr4:... 959 0.0 > AT4G13110.1 | Symbols: | BSD domain-containing protein | chr4:7641378-7642598 FORWARD LENGTH=1221 Length=1221 Score = 959 bits (519), Expect = 0.0 Identities = 612/658 (93%), Gaps = 2/658 (0%) Strand=Plus/Plus Query 104 TTCATCTTCATGGAGTTTCGGTAATCTAATCAAAACCCTAGCGACAAAATCCGAATCTGT 163 ||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 186 TTCTTCTTCATGGAGTTTCGGCAATCTAATCAAAACCCTATCGACAAAATCCGAATCTGT 245 Query 164 AATCGGATCCTACCGTCGCGATTTCGAGGAATTCGGATCCGAATTGAAGAAAGAAACCTC 223 |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 246 AATCGGATCCTACCGTCGCGATTTGGTCGAATTCGGATCCGAATTGAAGAAAGAAACCTC 305 Query 224 AATAATCCGACGAGTAGCTTCGAGATTACCTGATTCTCTCGAGATCGGAGCCGCCGTCGC 283 ||||||||||||||||||||| |||||||||||||||||||| || || ||| ||||||| Sbjct 306 AATAATCCGACGAGTAGCTTCAAGATTACCTGATTCTCTCGAAATTGGCGCCTCCGTCGC 365 Query 284 TTCGGAATCTCTCGAATCGGTTGGTCAAGTTATCGACGATATCGGTGCCTCCGTGTGGAA 343 ||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| Sbjct 366 TTCGGAATCTCTCGAATCGGTAGGTCAAGTTATCGACGATATCGGCGCCACCGTGTGGAA 425 Query 344 ATCAACGGCTAAGATTATTTCTCATGGTAAGGAGTCTCTAAAACCGGATCGTGACCGTAC 403 ||||||||||||||||||||||| ||||||||| ||| || ||||| ||||||||||||| Sbjct 426 ATCAACGGCTAAGATTATTTCTCGTGGTAAGGAATCTTTAGAACCGAATCGTGACCGTAC 485 Query 404 AAATCAGGGTTTATCTGT-GAAACCCTATAGTCGTTTTGAGATGATGTTACTTGCGATGC 462 |||||||| ||| || || |||||| ||| |||||||||||||||||||||||||| | | Sbjct 486 AAATCAGGTTTTGTC-GTTGAAACCTTATCGTCGTTTTGAGATGATGTTACTTGCGTTAC 544 Query 463 AATCTGATAAAGGAACGTTTGTCAGAGAACCTGATGATTTAAGTAATTTTGAGAATTGGA 522 ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 545 AATCTGATAAAGGCACGTTTGTTAGAGAACCTGATGATTTAAGTGATTTTGAGAATTGGA 604 Query 523 GTTTAGGGTTTAAGTTAGAGGAGAAAAGGAATGAGATTGTTGATTTAATTAATGGAAACA 582 |||||||||| |||||||||||||||||||||||||||||||| || |||||||| |||| Sbjct 605 GTTTAGGGTTGAAGTTAGAGGAGAAAAGGAATGAGATTGTTGAGTTGATTAATGGGAACA 664 Query 583 AAGTTGTTAAAGAGATCTATGAGGAGATTGTTCCTGTGGAAGTTGATGCTGAGACTTTCT 642 ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 665 AAGGTGTTAAAGAGATCTATGAGGAGATTGTTCCTGTTGAAGTTGATGCTGAGACTTTTT 724 Query 643 GGAGGAGGTATTTTTATAAAGTTAATAAGCTTGAGCAAGTAGAAGAAGCTAGAGTTAAGC 702 |||| ||||||| |||||||||| ||||||||||||||||||| |||||||| ||||||| Sbjct 725 GGAGAAGGTATTATTATAAAGTTTATAAGCTTGAGCAAGTAGAGGAAGCTAGGGTTAAGC 784 Query 703 TTCTGAAGAGAGCTATTTCTGGTGAAGAAGATGAAGATTTGAGCTGGGAGCTTGATGA 760 || ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct 785 TTGTGAAGAGAGCTATTTCTGGTGAAGAAGATGAGGATTTAAGCTGGGATCTTGATGA 842 Score = 309 bits (167), Expect = 4e-83 Identities = 297/352 (84%), Gaps = 39/352 (11%) Strand=Plus/Plus Query 798 GAGGAGGAGAAGGTAGAGAGCAGAGAGGTTTCGTCTAAGGACAGTGATTATTCGGTGATT 857 ||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 844 GAGAAGGAGAAGGTAGAGAGCAGAGATGTTTCGTCTAAGGATAGTGATTATTCGGTGATT 903 Query 858 TCGACACAGCCATCGTTACCT-GAAGTTGAAGATCTTGGGTGGGATAAGATGGAAGAAGA 916 ||||||||||||||||||| | | || ||||||||||||||||||||||||||||||||| Sbjct 904 TCGACACAGCCATCGTTACTTGGTAG-TGAAGATCTTGGGTGGGATAAGATGGAAGAAGA 962 Query 917 TGTCAGAAGCAATGAGGAGAGGAGTTTGGAGGTTGGTCAAGGGATTGTGGAGAGATCGGG 976 | ||||||||||||||||||| | || ||| |||| | | | ||| |||| Sbjct 963 TATCAGAAGCAATGAGGAGAG-A-TT-GGA--TTGG-C--G--A------AGA---CGGG 1003 Query 977 TTGGCGAAGACGGGTTAGTGTAGCGGTAGAGGAAGAAGAGGATTTATCTTGGGATATTGA 1036 || | || ||| | | | || | | || |||| | | ||||||||||||||||||| Sbjct 1004 CCGGTGTAG-CGG-T--G-G-AG-G--A-AG-AAGA-G-G-ATTTATCTTGGGATATTGA 1049 Query 1037 AGATGAAGATGATGACTCTGTTCATCAACAATAGATAGAGTATACTTGTCTTATAGAAAA 1096 |||||||||||||||||||||||| | ||||||||||||||||||||| ||| |||||| Sbjct 1050 AGATGAAGATGATGACTCTGTTCA--A-CAATAGATAGAGTATACTTGTGTTACAGAAAA 1106 Query 1097 GGCAA-GATTTAGTGTGATCACAGTTATTTAGTGTGATCAATACATATACAA 1147 ||||| ||||||||||||||| ||||||| ||||||||| |||| ||||||| Sbjct 1107 GGCAAAGATTTAGTGTGATCATAGTTATTAAGTGTGATCTATACCTATACAA 1158 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56274810945 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5