BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497083
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13110.1 | Symbols: | BSD domain-containing protein | chr4:... 959 0.0
> AT4G13110.1 | Symbols: | BSD domain-containing protein | chr4:7641378-7642598
FORWARD LENGTH=1221
Length=1221
Score = 959 bits (519), Expect = 0.0
Identities = 612/658 (93%), Gaps = 2/658 (0%)
Strand=Plus/Plus
Query 104 TTCATCTTCATGGAGTTTCGGTAATCTAATCAAAACCCTAGCGACAAAATCCGAATCTGT 163
||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 186 TTCTTCTTCATGGAGTTTCGGCAATCTAATCAAAACCCTATCGACAAAATCCGAATCTGT 245
Query 164 AATCGGATCCTACCGTCGCGATTTCGAGGAATTCGGATCCGAATTGAAGAAAGAAACCTC 223
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 246 AATCGGATCCTACCGTCGCGATTTGGTCGAATTCGGATCCGAATTGAAGAAAGAAACCTC 305
Query 224 AATAATCCGACGAGTAGCTTCGAGATTACCTGATTCTCTCGAGATCGGAGCCGCCGTCGC 283
||||||||||||||||||||| |||||||||||||||||||| || || ||| |||||||
Sbjct 306 AATAATCCGACGAGTAGCTTCAAGATTACCTGATTCTCTCGAAATTGGCGCCTCCGTCGC 365
Query 284 TTCGGAATCTCTCGAATCGGTTGGTCAAGTTATCGACGATATCGGTGCCTCCGTGTGGAA 343
||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||
Sbjct 366 TTCGGAATCTCTCGAATCGGTAGGTCAAGTTATCGACGATATCGGCGCCACCGTGTGGAA 425
Query 344 ATCAACGGCTAAGATTATTTCTCATGGTAAGGAGTCTCTAAAACCGGATCGTGACCGTAC 403
||||||||||||||||||||||| ||||||||| ||| || ||||| |||||||||||||
Sbjct 426 ATCAACGGCTAAGATTATTTCTCGTGGTAAGGAATCTTTAGAACCGAATCGTGACCGTAC 485
Query 404 AAATCAGGGTTTATCTGT-GAAACCCTATAGTCGTTTTGAGATGATGTTACTTGCGATGC 462
|||||||| ||| || || |||||| ||| |||||||||||||||||||||||||| | |
Sbjct 486 AAATCAGGTTTTGTC-GTTGAAACCTTATCGTCGTTTTGAGATGATGTTACTTGCGTTAC 544
Query 463 AATCTGATAAAGGAACGTTTGTCAGAGAACCTGATGATTTAAGTAATTTTGAGAATTGGA 522
||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 545 AATCTGATAAAGGCACGTTTGTTAGAGAACCTGATGATTTAAGTGATTTTGAGAATTGGA 604
Query 523 GTTTAGGGTTTAAGTTAGAGGAGAAAAGGAATGAGATTGTTGATTTAATTAATGGAAACA 582
|||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 605 GTTTAGGGTTGAAGTTAGAGGAGAAAAGGAATGAGATTGTTGAGTTGATTAATGGGAACA 664
Query 583 AAGTTGTTAAAGAGATCTATGAGGAGATTGTTCCTGTGGAAGTTGATGCTGAGACTTTCT 642
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 665 AAGGTGTTAAAGAGATCTATGAGGAGATTGTTCCTGTTGAAGTTGATGCTGAGACTTTTT 724
Query 643 GGAGGAGGTATTTTTATAAAGTTAATAAGCTTGAGCAAGTAGAAGAAGCTAGAGTTAAGC 702
|||| ||||||| |||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct 725 GGAGAAGGTATTATTATAAAGTTTATAAGCTTGAGCAAGTAGAGGAAGCTAGGGTTAAGC 784
Query 703 TTCTGAAGAGAGCTATTTCTGGTGAAGAAGATGAAGATTTGAGCTGGGAGCTTGATGA 760
|| ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 785 TTGTGAAGAGAGCTATTTCTGGTGAAGAAGATGAGGATTTAAGCTGGGATCTTGATGA 842
Score = 309 bits (167), Expect = 4e-83
Identities = 297/352 (84%), Gaps = 39/352 (11%)
Strand=Plus/Plus
Query 798 GAGGAGGAGAAGGTAGAGAGCAGAGAGGTTTCGTCTAAGGACAGTGATTATTCGGTGATT 857
||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 844 GAGAAGGAGAAGGTAGAGAGCAGAGATGTTTCGTCTAAGGATAGTGATTATTCGGTGATT 903
Query 858 TCGACACAGCCATCGTTACCT-GAAGTTGAAGATCTTGGGTGGGATAAGATGGAAGAAGA 916
||||||||||||||||||| | | || |||||||||||||||||||||||||||||||||
Sbjct 904 TCGACACAGCCATCGTTACTTGGTAG-TGAAGATCTTGGGTGGGATAAGATGGAAGAAGA 962
Query 917 TGTCAGAAGCAATGAGGAGAGGAGTTTGGAGGTTGGTCAAGGGATTGTGGAGAGATCGGG 976
| ||||||||||||||||||| | || ||| |||| | | | ||| ||||
Sbjct 963 TATCAGAAGCAATGAGGAGAG-A-TT-GGA--TTGG-C--G--A------AGA---CGGG 1003
Query 977 TTGGCGAAGACGGGTTAGTGTAGCGGTAGAGGAAGAAGAGGATTTATCTTGGGATATTGA 1036
|| | || ||| | | | || | | || |||| | | |||||||||||||||||||
Sbjct 1004 CCGGTGTAG-CGG-T--G-G-AG-G--A-AG-AAGA-G-G-ATTTATCTTGGGATATTGA 1049
Query 1037 AGATGAAGATGATGACTCTGTTCATCAACAATAGATAGAGTATACTTGTCTTATAGAAAA 1096
|||||||||||||||||||||||| | ||||||||||||||||||||| ||| ||||||
Sbjct 1050 AGATGAAGATGATGACTCTGTTCA--A-CAATAGATAGAGTATACTTGTGTTACAGAAAA 1106
Query 1097 GGCAA-GATTTAGTGTGATCACAGTTATTTAGTGTGATCAATACATATACAA 1147
||||| ||||||||||||||| ||||||| ||||||||| |||| |||||||
Sbjct 1107 GGCAAAGATTTAGTGTGATCATAGTTATTAAGTGTGATCTATACCTATACAA 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56274810945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5