BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg497089

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13075.1 | Symbols: RALFL30 | RALF-like 30 | chr4:7624680-76...   418    2e-116


> AT4G13075.1 | Symbols: RALFL30 | RALF-like 30 | chr4:7624680-7625192 
REVERSE LENGTH=513
Length=513

 Score =  418 bits (226),  Expect = 2e-116
 Identities = 305/341 (89%), Gaps = 14/341 (4%)
 Strand=Plus/Plus

Query  1    TTGTTAATAATTCCTCGCTTTGTCGTTTTCAGAATCATAT-aa--a-a-aa--g------  47
            ||||||| |||||||| ||||||||||||||||||||||| ||  | | ||  |      
Sbjct  1    TTGTTAAGAATTCCTCACTTTGTCGTTTTCAGAATCATATAAATTATAGAAGGGAATAAA  60

Query  48   -aaaaaCATCAAGTCAAAATGAAGGCTTGGGGGATATGTTTGATGGTAATAAGCATTTTC  106
             ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct  61   AAAAAACATCAAGTCAAAATGAAGGCTTGGGTCATATGTTTGATGGTAATAAGCATTTTC  120

Query  107  ATGATGATGGAGCCAACGCTAGCTGCTGGTGTGGGTAAATTTTTAAATCCAGGGGTGCTT  166
            |||||||| |||||||| ||||||||||||| ||||||||||||||||||||| ||||||
Sbjct  121  ATGATGATTGAGCCAACACTAGCTGCTGGTGGGGGTAAATTTTTAAATCCAGGAGTGCTT  180

Query  167  GATCCGTGTTTGCGTCCTAATCCACCAGCAGGGTGTCAGGCCCCAGGATCAGCTGGGAAA  226
            ||||||||||||||||||||||| ||| ||| |||||| |||||||||||||||||||||
Sbjct  181  GATCCGTGTTTGCGTCCTAATCCTCCACCAGAGTGTCAAGCCCCAGGATCAGCTGGGAAA  240

Query  227  CCTAAAGAGCGAGTTAATGAGTATAAAGCTGGATGCTCCAAGCTTACCCGGTGCAACCGT  286
            |||| ||||||||||||||| ||||||| |||||||||||| |||||||||||| |||||
Sbjct  241  CCTAGAGAGCGAGTTAATGAATATAAAGTTGGATGCTCCAAACTTACCCGGTGCGACCGT  300

Query  287  GCCGGATAATCATGATTTCTTTCATTATTTTTATGAGAAAT  327
            | ||||||||||| |||| ||| |||| |||||||||||||
Sbjct  301  GTCGGATAATCATTATTTATTTTATTAGTTTTATGAGAAAT  341



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17040766911


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5