BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497105
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13010.1 | Symbols: | Oxidoreductase, zinc-binding dehydrog... 1829 0.0
> AT4G13010.1 | Symbols: | Oxidoreductase, zinc-binding dehydrogenase
family protein | chr4:7600551-7602729 FORWARD LENGTH=1283
Length=1283
Score = 1829 bits (990), Expect = 0.0
Identities = 1182/1271 (93%), Gaps = 28/1271 (2%)
Strand=Plus/Plus
Query 9 TGATATACCGCTTTTACCCCTTAAGCCTCTCCGCGTAAAACCGAGAACAAATATCTTAAG 68
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 19 TGATATACCGCTTTTACCCCTTAAGCCTCTCCGCGTAAAACCGAGAACAAA-ATCTTAAG 77
Query 69 CACCGTTGTTTTCGATTCAGAGATCATCGTCGTCGTCGTCGTTCA-AAACCTTCAACAAT 127
|||||||| || |||||||||||||| |||||||||||||||| |||||||||| |||
Sbjct 78 CACCGTTG-TTCCGATTCAGAGATCA---TCGTCGTCGTCGTTCAGAAACCTTCAAAAAT 133
Query 128 GGCCGGAAAACTCATGCACGCTCTTCAGTACGACTCTTACGGTGGTGGCGCCGCCGCTTT 187
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 134 GGCTGGAAAACTCATGCACGCTCTTCAGTACAACTCTTACGGTGGTGGCGCCGCCGGATT 193
Query 188 AAAGCATGTTCAAGTTCTGGTTCCAACACCGAAGAGTAATGAGGTGTGCCTGAAATTAGA 247
| ||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||
Sbjct 194 AGAGCATGTTCAAGTTCCGGTTCCAACACCAAAGAGTAATGAGGTTTGCCTGAAATTAGA 253
Query 248 AGCTACTAGTTTAAACCCTGTTGATTGGAAAATTCAGAAAGGAATGATCCGCCCTTTTCT 307
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 254 AGCTACTAGTCTAAACCCTGTTGATTGGAAAATTCAGAAAGGAATGATCCGCCCATTTCT 313
Query 308 GCCCCGCAAGTTCCCCTGCATTCCTGCTACTGATGTTGCTGGAGAAGTCGTTGAGGTTGG 367
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 314 GCCCCGCAAGTTCCCCTGCATTCCAGCTACTGATGTTGCTGGAGAGGTCGTTGAGGTTGG 373
Query 368 ATCAGGAGTCAAGAATTTCAAGGCCGGTGACAAAGTTGTAGCGGTTCTTAGCCATCTAGG 427
||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 374 ATCAGGAGTAAAAAATTTTAAGGCTGGTGACAAAGTTGTAGCGGTTCTTAGCCATCTAGG 433
Query 428 TGGAGGTGGACTTGCTGAGTTCGCTGTTGCAAGCGAGAAGCTGACTGTCAAAAGACCTCA 487
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 434 TGGAGGTGGACTTGCTGAGTTCGCTGTTGCAACCGAGAAGCTGACTGTCAAAAGACCTCA 493
Query 488 AGAAGTGGGAGCAGCTGAAGCAGCCGCTTTACCTGTGGCGGGTCTAACCGCTCTCCAAGC 547
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 494 AGAAGTGGGAGCAGCTGAAGCAGCAGCTTTACCTGTGGCGGGTCTAACCGCTCTCCAAGC 553
Query 548 TCTTACTAATCCTGCGGGGTTGAAGCTGGATGGTACAGGCAAGAAGGCGAACATCCTGGT 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 TCTTACTAATCCTGCGGGGTTGAAGCTGGATGGTACAGGCAAGAAGGCGAACATCCTGGT 613
Query 608 CACAGCAGCATCTGGTGGGGTTGGCCACTATGCAGTCCAGCTGGCAAAACTTGCGAACGC 667
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 614 CACAGCAGCATCTGGTGGGGTTGGTCACTATGCAGTCCAGCTGGCAAAACTTGCAAATGC 673
Query 668 TCATGTAACCGCTACATGTGGTGCCCGGAACATAGACTTTGTCAAATCGTTGGGAGCGGA 727
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 674 TCACGTAACCGCTACATGTGGTGCCCGGAACATAGAGTTTGTCAAATCGTTGGGAGCGGA 733
Query 728 TGAGGTTCTCGACTACAAGACTCCCGAGGGAGCTGCCCTCAAGAGTCCGTCAGGTAAGAA 787
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 734 TGAGGTTCTCGACTACAAGACTCCCGAGGGAGCCGCCCTCAAGAGTCCGTCGGGTAAAAA 793
Query 788 ATATGACGCTGTAGTTCATTGTGCAAACGGGATTCCATTTTCAACATTCGAACCAAATCT 847
|||||||||||| || |||||||||||||||||||||||||| ||||||||||||| |
Sbjct 794 ATATGACGCTGTGGTCCATTGTGCAAACGGGATTCCATTTTCGGTATTCGAACCAAATTT 853
Query 848 GTCGGAAAACGGGAAGGTGATAGACATCACGCCGGGTCCTAGTGCCATGTGGACTTATGC 907
|||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||
Sbjct 854 GTCGGAAAACGGGAAGGTGATAGACATCACACCGGGGCCTAATGCAATGTGGACTTATGC 913
Query 908 GGTTAAGAAAGTAACCATGTCAAAGAAGCAATTGGTACCGCTCTTGTTGATCCCAAAAGC 967
|||||||||| ||||||||||||||||||| || || || ||||||||||||||||||||
Sbjct 914 GGTTAAGAAAATAACCATGTCAAAGAAGCAGTTAGTGCCACTCTTGTTGATCCCAAAAGC 973
Query 968 TGAGAATTTGGAGTTCATGGTGAATCTAGTGAAAGAAGGGAAAGTGAAGACTGTGATTGA 1027
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 974 TGAGAATTTGGAGTTTATGGTGAATCTAGTGAAAGAAGGGAAAGTGAAGACAGTGATTGA 1033
Query 1028 CTCGAAGCACCCTCTGAGCAAAGCGGAAGATGCTTGGGCCAAAAGTATCGATGGCCATGC 1087
||| ||||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1034 CTCAAAGCATCCTTTGAGCAAAGCGGAGGATGCTTGGGCCAAAAGTATCGATGGTCATGC 1093
Query 1088 TACTGGGAAGATCATTGTCGAGCCATAAGAGCtttttttGCCATCTTTGACTGTCTGTGA 1147
|||||||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 1094 TACTGGGAAGATCATTGTCGAGCCATAAGAGCGTTGTA-GCCATCTTTGACTGTCTGTGA 1152
Query 1148 A----A-AA--G-T-TT----GTTTT-G--C-GTTTACACATTGCTTTATGTTGTTTTGT 1190
| | || | | || |||| | | ||||||| | || |||||||||||||||
Sbjct 1153 ATGTGATAATAGATGTTAAAAGTTTGCGTACCGTTTACAGAATGTTTTATGTTGTTTTGT 1212
Query 1191 TTAATATACCCGAGTATGTCGAAAATTATATGACAAGAAAATTTGG-T-A--TAGATAAT 1246
|||||||||||||||||||||||| ||| |||| |||||||||||| | | || |||||
Sbjct 1213 TTAATATACCCGAGTATGTCGAAAGTTACATGAAAAGAAAATTTGGATGAAATAAATAAT 1272
Query 1247 ACTTGTTAGGT 1257
|||||||||||
Sbjct 1273 ACTTGTTAGGT 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61796870895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5