BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg497108

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G12970.1 | Symbols: STOMAGEN, EPFL9 | stomagen | chr4:758614...   573    4e-163


> AT4G12970.1 | Symbols: STOMAGEN, EPFL9 | stomagen | chr4:7586143-7586849 
REVERSE LENGTH=461
Length=461

 Score =  573 bits (310),  Expect = 4e-163
 Identities = 387/423 (91%), Gaps = 10/423 (2%)
 Strand=Plus/Plus

Query  1    AAGAAGAAGAAGAAGTAGAGGATGAAGCATGAAATGATGAATTTCAAGCCAAGATGCGTA  60
            |||||||||||||||||||| ||||||||||||||||||||  |||||||||||||| ||
Sbjct  31   AAGAAGAAGAAGAAGTAGAGAATGAAGCATGAAATGATGAACATCAAGCCAAGATGCATA  90

Query  61   ACCATCTTCTTCCTTCTCTTTGCTTTGGTTCTTGGAGATTATGTAGTTCAAGCCTCAAGA  120
            ||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct  91   ACCATCTTCTTTCTTCTTTTTGCTTTGCTTCTTGGAAATTATGTAGTTCAAGCCTCAAGA  150

Query  121  CCTCATCCTATCGAAAATACGGTCTCACTTCACTCACAAGTACATCTCCTGAATTCAAGG  180
            |||| | ||||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct  151  CCTCGTTCTATCGAAAATACGGTCTCCCTTCTCCCACAAGTACATCTCCTGAATTCAAGG  210

Query  181  AGAAGGCATATGATAGGTTCGACGGCACCAACTTGTACGTACAACGAGTGCAGAGGATGC  240
            || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  211  AGGAGGCATATGATAGGGTCGACAGCACCAACTTGTACGTACAACGAGTGCAGAGGATGC  270

Query  241  AGATACAAATGCAGAGCAGAGCAAGTTCCAGTCGAAGGAAATGACCCTATCAACAGTGCT  300
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  271  AGATACAAGTGCAGAGCAGAGCAAGTTCCAGTCGAAGGAAATGACCCTATCAACAGTGCT  330

Query  301  TATCATTATAGATGTGTTTGTCATAGATAATAATAAT-AAATCTCTTct-tttt-gccct  357
            |||||||||||||||||||||||||||||||| |  | ||||||||||| |||| |||||
Sbjct  331  TATCATTATAGATGTGTTTGTCATAGATAATAGTTGTTAAATCTCTTCTCTTTTTGCCCT  390

Query  358  ttcataatttattgcaatttttgtataacttgattgctttttgttttttgAATGAGATGC  417
            |||||  |     ||||||||||||  |||| ||||| ||||| ||||||||||||||| 
Sbjct  391  TTCAT--T-----GCAATTTTTGTACGACTTAATTGCATTTTGGTTTTTGAATGAGATGT  443

Query  418  TTT  420
            |||
Sbjct  444  TTT  446



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19906028604


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5