BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497109
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12960.2 | Symbols: GILT, AtGILT | Gamma interferon responsi... 494 6e-139
AT4G12890.1 | Symbols: | Gamma interferon responsive lysosomal... 392 2e-108
AT4G12900.1 | Symbols: | Gamma interferon responsive lysosomal... 337 1e-91
AT4G12870.1 | Symbols: | Gamma interferon responsive lysosomal... 283 1e-75
> AT4G12960.2 | Symbols: GILT, AtGILT | Gamma interferon responsive
lysosomal thiol (GILT) reductase family protein | chr4:7583272-7584630
FORWARD LENGTH=979
Length=979
Score = 494 bits (267), Expect = 6e-139
Identities = 324/352 (92%), Gaps = 2/352 (1%)
Strand=Plus/Plus
Query 1 AGCACTCAACTCAAACTCTTTTAGTAACAATGGCTTCTGATTCTTTAACCAAGCTTGTGT 60
||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1 AGCACTCAACTTAAACTCTTTTAGTAACAATGGTTTCTTCTTCTTTAACCAAGCTTGTGT 60
Query 61 TATTTGCTTGTGTCCTCCTGCTTACATTCTCAGAAAACCTTGTGGCTGGAGATTCCGACA 120
| |||| |||| |||||||||| |||||| | || ||||||||||||||| | || | ||
Sbjct 61 TCTTTGGTTGTCTCCTCCTGCTCACATTCACGGACAACCTTGTGGCTGGAAAATCTGGCA 120
Query 121 AAGTGAAGCTCAATCTTTACTATGAATCACTTTGTCCCGGTTGTCAGGAGTTCATCGTCG 180
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 121 AAGTGAAGCTCAATCTTTACTACGAATCACTTTGTCCCGGTTGTCAGGAATTCATCGTCG 180
Query 181 ATGATCTAAGTAAAATCTTTGACTATGATCTCTACACAATTACTCATCTCAAGCTGGTTC 240
|||| ||| |||||||||||||||| |||||||||||||| ||| ||||||||||| |||
Sbjct 181 ATGACCTAGGTAAAATCTTTGACTACGATCTCTACACAATCACTGATCTCAAGCTGTTTC 240
Query 241 CATTTGGTAATGCCAAACTCTCCGATAATCTGACTATCACTTGCCAGCATGGTGAAGAGG 300
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 CATTTGGTAATGCCGAACTCTCCGATAATCTGACTGTCACTTGCCAGCATGGTGAAGAGG 300
Query 301 AATGCAAACTAAACGCCCTTGAAGCTTGCGCTAT-AAGAACATGGCCCGATC 351
||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 301 AATGCAAACTAAACGCCCTTGAAGCTTGCGC-ATTAAGAACTTGGCCCGATC 351
> AT4G12890.1 | Symbols: | Gamma interferon responsive lysosomal
thiol (GILT) reductase family protein | chr4:7546377-7547641
FORWARD LENGTH=898
Length=898
Score = 392 bits (212), Expect = 2e-108
Identities = 551/703 (78%), Gaps = 69/703 (10%)
Strand=Plus/Plus
Query 84 ACATTCTCAGAA-AACCT--T-GTGGCTGGAGATTCCGACAAAGTGAAGCTCAATCTTTA 139
|||| |||| || ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct 107 ACATACTCA-AACAACCTCGTCGTGGCTGAAAATTCCAACAAAGTGAAGATCAATCTTTA 165
Query 140 CTATGAATCACTTTGTCCCGGTTGTCAGGAGTTCATCGTCGATGATCTAAGTAAAATCTT 199
||||||||||||||||||| |||||| | ||||| || ||||||||| ||||||||||
Sbjct 166 CTATGAATCACTTTGTCCCTATTGTCAAAATTTCATTGTTGATGATCTAGGTAAAATCTT 225
Query 200 TGACTATGATCT-CTACACAATTACTC-ATCTCAAGCTGGTTCCATTTGGTAATGC-CAA 256
||||| ||||| || || ||| || | |||||||||| |||||||| ||||| || ||
Sbjct 226 TGACTCCGATCTCCT-CAAAATCAC-CGATCTCAAGCTCGTTCCATTCGGTAACGCTCAT 283
Query 257 ACTCTCCGATAATCTGACTATCACTTGCCAGCATGGTGAAGAGGAATGCAAACTAAACGC 316
| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 284 A-TCTCCAATAATCTGACTATTACTTGCCAGCATGGTGAAGAGGAATGCAAACTTAACGC 342
Query 317 CCTTGAAGCTTGCGCTATAAGAACATGGCCCGATCCGATTTTT-ATT-CAGGGACA-AC- 372
|| |||||||||| ||||||||| | ||||||||||| || | | || | || ||
Sbjct 343 TCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCGAAATTGCAGTACAAGTTCATACG 402
Query 373 -TG-----AAT--GTTA-GAATT--TC--ATTT-TG-GC-AAATAACTCTGGACGTGAGA 416
|| || | || |||| | | | || | ||| || |||||||||||||
Sbjct 403 CTGCGTTGAAAAAGATACGAATGAATGGGAATCATGTGTTAAAAAA-TCTGGACGTGAGA 461
Query 417 AAGCTATCAATGATTGTTAAAATGGTGATCT-T-TAGAGAAAGGTACCTGATACTTAGGT 474
|||| |||||||||||||| ||||||||||| | | | |||| | |||||||| |||
Sbjct 462 AAGCCATCAATGATTGTTACAATGGTGATCTCTCTC-A-AAAG---C-TGATACTTGGGT 515
Query 475 ACGCAACCCAAACCATA-AGTTTGAAGCCGCCACATGAATATGTACCATGGGTCACACTC 533
| |||| | ||| | ||||||||||| ||||||||| ||||||||||||||||||
Sbjct 516 ATGCAAAACTGACC-TCGAGTTTGAAGCCAAAACATGAATACGTACCATGGGTCACACTC 574
Query 534 AACGGCAAACCACTCGATGATAACGTACAAAGTATGGATGATCTCATGGCTCAAATCTGC 593
||||||||||||||| |||| || ||| | || || | | | || ||| |||||
Sbjct 575 AACGGCAAACCACTCTATGACAAT-TACCA--TA---AT--T-TGGTCGCACAAGTCTGC 625
Query 594 AAAGCATACAAAGGAAAGACTGCTCTCCCAAAAGTTTGCAATTCATCTGCCTTGATGTCT 653
||||| |||||||||||| | |||||||||| | |||| ||| || | | ||||
Sbjct 626 AAAGCGTACAAAGGAAAG---GATCTCCCAAAACTATGCAGTTC--CT-C---G--GTCT 674
Query 654 AAGTCACCTAAGAGGAAAGTGTGGAAGCTTCAAGTCT--TATGCCGATAAAGCTATCAAT 711
|| | | |||||||||||| ||| ||||||||| |||| ||| |||||||||||
Sbjct 675 T-GT-A--TGAGAGGAAAGTGTCAAAGTTTCAAGTCTCCTATGTAGATGAAGCTATCAAT 730
Query 712 TATTAAGTTAACTATCAAACTTCTTATTGAA-CTAAGATGGAT 753
|| |||||||| || |||||||||||||||| |||||||||||
Sbjct 731 TAATAAGTTAATTAACAAACTTCTTATTGAAACTAAGATGGAT 773
> AT4G12900.1 | Symbols: | Gamma interferon responsive lysosomal
thiol (GILT) reductase family protein | chr4:7548820-7549974
FORWARD LENGTH=724
Length=724
Score = 337 bits (182), Expect = 1e-91
Identities = 497/640 (78%), Gaps = 57/640 (9%)
Strand=Plus/Plus
Query 41 TTCTTTAACCAAGCTTGTGTTATTTGCTTGTGTCCTCCTGCTT-ACATTCTCA-GA-A-A 96
||||| |||||||||||| || |||||||| ||||||| || ||||||||| | | |
Sbjct 24 TTCTTCAACCAAGCTTGTATTCTTTGCTTGCCTCCTCCT-ATTCACATTCTCATCACACA 82
Query 97 ACCTTGTGGCTGGAGATTCCGACAAAGTGAAGCTCAATCTTTACTATGAATCACTTTGTC 156
| || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 83 ATCTCGTGGCTGGAGAATCCGACAAAGTAAAGCTCAATCTTTACTATGAATCACTTTGTC 142
Query 157 CCGGTTGTCAGGAGTTCATCGTCGATGATCTAAGTAAAATCTTTGACTA-TGATCTCTAC 215
| ||||||| | ||||||||| || ||||| | ||||||||| || | ||||||| ||
Sbjct 143 CTTCTTGTCAGAATTTCATCGTCCATCATCTAGGCAAAATCTTTAAC-ACTGATCTCCAC 201
Query 216 ACAATTACTC-ATCTCAAGCTGGTTCCATTTGGTAATGCCAAACTCTCCGATAATCTGAC 274
||||| || | |||||||||| ||||||| ||||| ||| | |||||||| |||| ||
Sbjct 202 ACAATCAC-CGATCTCAAGCTCATTCCATTCGGTAACGCCCATGTCTCCGATGATCTTAC 260
Query 275 TATCACTTGCCAGCATGGTGAAGAGGAATGCAAACTAAACGCCCTTGAAGCTTGCGCTAT 334
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct 261 CGTCACTTGCCAGCATGGTGAAGAAGAATGCAAATTAAACGCCCTTGAAGCTTGCGCCAT 320
Query 335 AAGAACATGGCCCGATCCGA--TT----T-----TT-ATTCAG-G-G---A--C-AACT- 373
|||||| ||||| ||| || || | || |||| | | | | | |||
Sbjct 321 AAGAACTTGGCCTAATCAGAGATTGCACTACAAGTTCATTCGGTGCGTTGAAACTAACAC 380
Query 374 GAATG-TTAG-AATTTCATTTTGGCAAATAACTCTGGACGTGAGAAAGCTATCAATGATT 431
||||| || | ||| | || || || || | |||| |||| ||||| || |||||||
Sbjct 381 GAATGCTTGGGAAT--C-TTGTGTTAAG-AAGTATGGAGGTGAAAAAGCGATAAATGATT 436
Query 432 GTTAAAATGGTGATCTTTAGAGAAAGGTACCTGATACTTAGGTACGCAACCCAAACCATA 491
|||| ||||||||||| | | || | | ||||||||| |||| |||| ||| || ||
Sbjct 437 GTTACAATGGTGATCTCTCTA-AA-G--AGCTGATACTTGGGTATGCAAACCAGAC-ATT 491
Query 492 -AGTTTGAAGCCGCCA-CATGAATATGTACCATGGGTCACACTCAACGGCAAACCACTCG 549
|||||||| ||| | ||| |||| ||||||||| | |||||||||||| ||||||||
Sbjct 492 GAGTTTGAAACCGG-AGCATAAATACGTACCATGGATGACACTCAACGGCGAACCACTC- 549
Query 550 ATGATAACGTACAAAGTAT-GGATGATCTCATGG-CTCAAATCTGCAAAGCATACAAAGG 607
| | || | ||| ||| || |||| | ||| || | |||||||||| || |||||
Sbjct 550 -T-A---CG-A-AAA-TATTGG-TGATTTTGTGGACTTAG-TCTGCAAAGCGTATAAAGG 599
Query 608 AAAGACTGCTCTCCCAAAAGTTTGCAATTCATCTGCCTTG 647
|||| |||||||||| ||| | || |||| |||| ||||
Sbjct 600 AAAGGCTGCTCTCCCTAAACTCTGTTATTCCTCTGTCTTG 639
> AT4G12870.1 | Symbols: | Gamma interferon responsive lysosomal
thiol (GILT) reductase family protein | chr4:7542233-7543474
FORWARD LENGTH=795
Length=795
Score = 283 bits (153), Expect = 1e-75
Identities = 262/312 (84%), Gaps = 17/312 (5%)
Strand=Plus/Plus
Query 29 AATGGCTTCTGATTC--TTT-AACCAAGCTTGTGTTATTTGCTTG-TGTCCTCCTGCTT- 83
||||| |||| ||| ||| |||||||||||| || |||||||| | | | ||| ||
Sbjct 52 AATGGTTTCTCCTTCTTTTTCAACCAAGCTTGTCTTCTTTGCTTGCT-TTGTTCTG-TTC 109
Query 84 ACATTCTCAGA-AAACCTTGTGGCTGGAGATTCCGACAAAG-TGAAGCTCAATCTTTACT 141
||||||||| | ||| || ||| | ||||| |||||||||| || |||||||||||||||
Sbjct 110 ACATTCTCACACAAA-CTCGTGACAGGAGAATCCGACAAAGTTG-AGCTCAATCTTTACT 167
Query 142 ATGAATCACTTTGTCCCGGTTGTCAGGAG-TTCATCGTCGATGATCTAAGT-AAAATCTT 199
| ||||||||||||||||||||||| ||| |||||||||||||| || ||| ||| ||||
Sbjct 168 ACGAATCACTTTGTCCCGGTTGTCA-GAGTTTCATCGTCGATGAACT-AGTCAAAGTCTT 225
Query 200 TGACTATGATCTCTACACAATTACTC-ATCTCAAGCTGGTTCCATTTGGTAATGCCAAAC 258
||||| |||||| | ||||| || | || ||||||| |||||||| ||| | ||||||
Sbjct 226 TGACTCCGATCTCGATACAATCAC-CGATGTCAAGCTCGTTCCATTCGGTTACGCCAAAG 284
Query 259 TCTCCGATAATCTGACTATCACTTGCCAGCATGGTGAAGAGGAATGCAAACTAAACGCCC 318
||||| |||||||||| ||| |||||||||||||||||||||||||||||| ||||| |
Sbjct 285 TCTCCAATAATCTGACCGTCATTTGCCAGCATGGTGAAGAGGAATGCAAACTCAACGCTC 344
Query 319 TTGAAGCTTGCG 330
||||||||||||
Sbjct 345 TTGAAGCTTGCG 356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36670927310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5