BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497111
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12900.1 | Symbols: | Gamma interferon responsive lysosomal... 1061 0.0
AT4G12890.1 | Symbols: | Gamma interferon responsive lysosomal... 545 2e-154
AT4G12960.2 | Symbols: GILT, AtGILT | Gamma interferon responsi... 169 4e-41
> AT4G12900.1 | Symbols: | Gamma interferon responsive lysosomal
thiol (GILT) reductase family protein | chr4:7548820-7549974
FORWARD LENGTH=724
Length=724
Score = 1061 bits (574), Expect = 0.0
Identities = 659/698 (94%), Gaps = 13/698 (2%)
Strand=Plus/Plus
Query 4 TCTTCTTC-TT--CTTCATCAACCAAATTTTGT-TTCTTCGCTTGCCTCCTCCTATTCAC 59
|||||||| || |||| |||||| || |||| ||||| ||||||||||||||||||||
Sbjct 10 TCTTCTTCGTTGGCTTCTTCAACC-AAGCTTGTATTCTTTGCTTGCCTCCTCCTATTCAC 68
Query 60 ATT-T--TCACACAACCTCGTGGCTGGACAATCCGACAAAGTTAAGCTCAATCTTTACTA 116
||| | |||||||| |||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 69 ATTCTCATCACACAATCTCGTGGCTGGAGAATCCGACAAAGTAAAGCTCAATCTTTACTA 128
Query 117 TGAATCACTTTGTCCTTCTTGTCAGAATTTCATCGTCCATCATCTAGGCAAAATCTTTAA 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 TGAATCACTTTGTCCTTCTTGTCAGAATTTCATCGTCCATCATCTAGGCAAAATCTTTAA 188
Query 177 CACCGATCTCCACACAATCACCGATCTCAAACTCATTCCATTCGGTAACGCCCATGTTTC 236
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 189 CACTGATCTCCACACAATCACCGATCTCAAGCTCATTCCATTCGGTAACGCCCATGTCTC 248
Query 237 CGATAATCTTACCGTCACTTGCCAGCATGGTGAAGAAGAATGCAAATTAAACGCCCTTGA 296
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 CGATGATCTTACCGTCACTTGCCAGCATGGTGAAGAAGAATGCAAATTAAACGCCCTTGA 308
Query 297 AGCTTGTGCCATAAGAACTTGGCCCAATCAGAGATTGCACTATAAGTTCATACGGTGTGT 356
|||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct 309 AGCTTGCGCCATAAGAACTTGGCCTAATCAGAGATTGCACTACAAGTTCATTCGGTGCGT 368
Query 357 TGAAACTAACACGAATGCTTGGGAATCATGTGTTAAGAAGTATGGAGGCGAGAAAGCGAT 416
||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 369 TGAAACTAACACGAATGCTTGGGAATCTTGTGTTAAGAAGTATGGAGGTGAAAAAGCGAT 428
Query 417 TAATGATTGTTACAATGGTGATCTTTCTAAAGAGCTGATACTTGGGTATGCAAACCAGAC 476
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 429 AAATGATTGTTACAATGGTGATCTCTCTAAAGAGCTGATACTTGGGTATGCAAACCAGAC 488
Query 477 ATTAAGTTTGAAACCGGAGCATAAATACGTACCATGGATGACACTCAACGGCGAACCACT 536
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 ATTGAGTTTGAAACCGGAGCATAAATACGTACCATGGATGACACTCAACGGCGAACCACT 548
Query 537 CTACGAAAATATTGGTGATTTTGTGGACTTAGTCTGCAAAGCTTATAAAGGAAAGGCTGC 596
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 549 CTACGAAAATATTGGTGATTTTGTGGACTTAGTCTGCAAAGCGTATAAAGGAAAGGCTGC 608
Query 597 TCTCCC-ACAACTCTGTTATTCCTCTGTCTTGTCACAGAGGACAATGTTGAAGCTTGAAT 655
|||||| | ||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct 609 TCTCCCTA-AACTCTGTTATTCCTCTGTCTTGTCTCAGAGGACAATGATG---CTTGAAT 664
Query 656 TCTCCTATGTTGATGAAGCTATAAATCACTAAGTTAAT 693
|||||||||||||||||||||| |||||||||||||||
Sbjct 665 TCTCCTATGTTGATGAAGCTATCAATCACTAAGTTAAT 702
> AT4G12890.1 | Symbols: | Gamma interferon responsive lysosomal
thiol (GILT) reductase family protein | chr4:7546377-7547641
FORWARD LENGTH=898
Length=898
Score = 545 bits (295), Expect = 2e-154
Identities = 551/673 (82%), Gaps = 24/673 (4%)
Strand=Plus/Plus
Query 33 TTTCTTCGCTTGCCTCCTCCTATTCACATTTTCACACAA-C-C-TCGTGGCTGGACAA-T 88
|||||| ||||||||| || | ||||||| ||| |||| | | |||||||| || || |
Sbjct 82 TTTCTTAGCTTGCCTCTTCGTGTTCACATACTCAAACAACCTCGTCGTGGCT-GAAAATT 140
Query 89 CCGACAAAGTTAAGCTCAATCTTTACTATGAATCACTTTGTCCTTCTTGTCAGAATTTCA 148
|| ||||||| ||| |||||||||||||||||||||||||||| | |||||| |||||||
Sbjct 141 CCAACAAAGTGAAGATCAATCTTTACTATGAATCACTTTGTCCCTATTGTCAAAATTTCA 200
Query 149 TCGTCCATCATCTAGGCAAAATCTTTAACACCGATCTCCACACAATCACCGATCTCAAAC 208
| || || ||||||| ||||||||| || ||||||||| || ||||||||||||||| |
Sbjct 201 TTGTTGATGATCTAGGTAAAATCTTTGACTCCGATCTCCTCAAAATCACCGATCTCAAGC 260
Query 209 TCATTCCATTCGGTAACGCCCATGTTTCCGATAATCTTACCGTCACTTGCCAGCATGGTG 268
|| |||||||||||||||| ||| | ||| ||||||| || | ||||||||||||||||
Sbjct 261 TCGTTCCATTCGGTAACGCTCATATCTCCAATAATCTGACTATTACTTGCCAGCATGGTG 320
Query 269 AAGAAGAATGCAAA-TTAAACGCCCTTGAAGCTTGTGCCATAAGAACTTGGCCCAATCAG 327
|||| ||||||||| |||| ||| || |||||||| | |||||||||| |||| ||| |
Sbjct 321 AAGAGGAATGCAAACTTAA-CGCTCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCG 379
Query 328 AGATTGCACTATAAGTTCATACGGTGTGTTGAAACTA-ACACGAATGCTTGGGAATCATG 386
| |||||| || ||||||||||| || ||||||| | | ||||||| |||||||||||
Sbjct 380 AAATTGCAGTACAAGTTCATACGCTGCGTTGAAAA-AGATACGAATGAATGGGAATCATG 438
Query 387 TGTTAAGAAGTATGGAGGCGAGAAAGCGATTAATGATTGTTACAATGGTGATCTTTCT-A 445
|||||| || | |||| | |||||||| || ||||||||||||||||||||||| ||| |
Sbjct 439 TGTTAAAAAATCTGGACGTGAGAAAGCCATCAATGATTGTTACAATGGTGATCTCTCTCA 498
Query 446 AAGAGCTGATACTTGGGTATGCAAACCAGACATTAAGTTTGAAACCGGAGCATAAATACG 505
|| |||||||||||||||||||||| | ||| | |||||||| || | ||| ||||||
Sbjct 499 AA-AGCTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAATACG 557
Query 506 TACCATGGATGACACTCAACGGCGAACCACTCTACGAAAAT-ATTGGTGATTTTGTGG-A 563
|||||||| | |||||||||||| |||||||||| || ||| | | |||| || | |
Sbjct 558 TACCATGGGTCACACTCAACGGCAAACCACTCTATGACAATTACCA-TAATTTGGTCGCA 616
Query 564 CTTAGTCTGCAAAGCTTATAAAGGAAAGGCTGCTCTCCCACAACTCTGTTA-TTCCTCTG 622
| |||||||||||| || |||||||||| | ||| || | |||| || | |||||| |
Sbjct 617 CA-AGTCTGCAAAGCGTACAAAGGAAAGGAT-CTC-CCAA-AACTATGC-AGTTCCTCGG 671
Query 623 TCTTGTCAC-AGAGGACAA-TGTTGAAGCTTGAATTCTCCTATGTTGATGAAGCTATAAA 680
|||||| | |||||| || ||| ||| || || |||||||||| ||||||||||| ||
Sbjct 672 TCTTGT-ATGAGAGGA-AAGTGTCAAAGTTTCAAGTCTCCTATGTAGATGAAGCTATCAA 729
Query 681 TCACTAAGTTAAT 693
| | |||||||||
Sbjct 730 TTAATAAGTTAAT 742
> AT4G12960.2 | Symbols: GILT, AtGILT | Gamma interferon responsive
lysosomal thiol (GILT) reductase family protein | chr4:7583272-7584630
FORWARD LENGTH=979
Length=979
Score = 169 bits (91), Expect = 4e-41
Identities = 168/203 (83%), Gaps = 14/203 (7%)
Strand=Plus/Plus
Query 342 GTTCATACGGTGTGTTGAAA-CTAACACG-AATGCTTGGGAATCATGTGTTAAGAAGTAT 399
|||||||||||| || |||| | | ||| || || ||||||||||||||||| || | |
Sbjct 398 GTTCATACGGTGCGTCGAAAGC-GATACGAAAGGC-TGGGAATCATGTGTTAAAAACTCT 455
Query 400 GGAGGCGAGAAAGCGATTAATGATTGTTACAATGGTGATCTTTCTA-AAGAGCTGATACT 458
||| | |||||||| || |||||||||||||||||||||||||||| || ||||||||||
Sbjct 456 GGACGTGAGAAAGCAATCAATGATTGTTACAATGGTGATCTTTCTAGAA-AGCTGATACT 514
Query 459 TGGGTATGCAAACCAGA-C-ATTAAGTTTGAAACCGG-AGCATAAATACGTACCATGGAT 515
|||||| |||| ||| | | | || |||||| ||| | ||| |||||||||||||| |
Sbjct 515 TGGGTACGCAA-CCAAAACCAAGAA-TTTGAAGCCGCCA-CATGAATACGTACCATGGGT 571
Query 516 GACACTCAACGGCGAA-CCACTC 537
|||||||||||| || ||||||
Sbjct 572 CACACTCAACGGC-AAGCCACTC 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33556410196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5